These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 821 fasta sequence [CCGCCCACGCGTCCGATTGAAGTACTGGGAAACGAGCATTTAAAAACACACGAAATTACGTCTTAACCGGAGAAATATACAATCAGAAAGAGGAAAACCTCTCCCCTCCCAATTAACAAACAACAATTAATAGTTAAAAAAATAAACACAGCACCGTCATCAGTAGAAAAACTTACCAAATTGCCAAGTATTTGAAATGGACAGCCCCATACACACTCACACAACCTGGAAGTAATCCACAAGTAATCGACATCAACCCAATGGCATGGCGGCAAAACGCTCTATTGTAACTCTATCGAAATAAACCATCTGTAACATTTGTCCGTGTGTGTGTGTGTGTGCGTGTGAGTGTATGGTAATTAAACAATGGAAACGATTTAACAGACAAGGCAAGACACGAGAGCAGGACAAACGCGTGGCAAACCAAAACCCAAGGAGCGTAAG-GAAATAGTATATTTTATCGAGCATGCAGACATTCGAGCGCGCTAGCAGGAAAGTCGCACAGAGCGCGCACCAACGCAGCTAAAATTATTGGAAGCAGTGGTTCTGTCAGCAGAACAGGCTGGCGCTGGCGGTTGGCCAATTATACAGGACGCGAAACGGACAAACTAAATGTGACGAGGAAACCATAGATAACCTGAAACGGACGCAAGCAAAGAGTTTGGGAAAGGCGAACAGCGCAGGATAGGTTCCACGAGGGATGGGGAAAGGTAGTGTAGTTCAGCGAGCTACCGTAGCATGTAAGCCTATAGAGCAATTTTCGAAATTGATACGAGACACAGAGAGAGAGGGAGAGAGCGAGAAACGGAGAAACAGAGAGT] [+] EMBL BM629850 [CCGCCCACGCGTCCGATTGAAGTACTGGGAAACGAGCATTTAAAAACACACGAAATTACGTCTTAACCGGAGAAATATACAATCAGAAAGAGGAAAACCTCTCCCCTCCCAATTAACAAACAACAATTAATAGTTAAAAAAATAAACACAGCACCGTCATCAGTAGAAAAACTTACCAAATTGCCAAGTATTTGAAATGGACAGCCCCATACACACTCACACAACCTGGAAGTAATCCACAAGTAATCGACATCAACCCAATGGCATGGCGGCAAAACGCTCTATTGTAACTCTATCGAAATAAACCATCTGTAACATTTGTCCGTGTGTGTGTGTGTGTGCGTGTGAGTGTATGGTAATTAAACAATGGAAACGATTTAACAGACAAGGCAAGACACGAGAGCAGGACAAACGCGTGGCAAACCAAAACCCAAGGAGCGTAAG GAAATAGTATATTTTATCGAGCATGCAGACATTCGAGCGCGCTAGCAGGAAAGTCGCACAGAGCGCGCACCAACGCAGCTAAAATTATTGGAAGCAGTGGTTCTGTCAGCAGAACAGGCTGGCGCTGGCGGTTGGCCAATTATACAGGACGCGAAACGGACAAACTAAATGTGACGAGGAAACCATAGATAACCTGAAACGGACGCAAGCAAAGAGTTTGGGAAAGGCGAACAGCGCAGGATAGGTT ] [+] EMBL BX611199 [ CAGGACAAACGCGTGGCAAACCAAAACCCAAGGAGCGTAAGTAAAATAGTATATTTTATCGAGCATGCAGGCATTCGAGCGCGCTAGCAGGAAAGTCGCACAGAGCGCGCACCAACGCAGCTAAAATTATTGGAAGCAGTGGTTCTGTCAGCAGAACAGGCTGGCGCTGGCGGTTGGCCAATTATACAGGACGCGAAACGGACAAACTAAATGTGACGAAGAAACCATAGATAACCTGAAACGGACGCAAGCAAAGAGTTTGGGAAAGGCGAACAGCGCAGGATAGGTTCCACGAGGGATGGGGAAAGGTAGTGTAGTTCAGCGAGCTACCGTAGCATGTAAGCCTATAGAGCAATTTTCGAAATTGATACGAGACACAGAGAGAGAGGGAGAGAGCGAGAAACGGAGAAACAGAGAGT] consensusID : consensus_3192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CGAGGCAAGAATCGGCACGATGGGCTCATATTAGCAAACACAATCTCACACAAACTGACACACACACGACACTCCGATTGTACATAATTTTATACAACTCCAACGATACATATGATTAAATCTAACTATATATATACATACTAACATAGATACCTATATCAAAATAGAGAAATTATCAGATTCATACGTTAGGTCCATTGGAGGCGCGGAAAAATCGAACTCATCGCATTCATTCCTATTACACGTGATGTATGATTTCATTGACTCGTGGCGAGAGGAATAGAAGAAATTAATACAGAACAGAACACTCTAGAGTGTTCGTGAAACTACGTTAAAACCACACCTAGTCCTAAATGAGACAGCGATTTAGCAGAAACTTCACTCCAGTTTCAAAACAAAAGTCGATCATATTGAAGTACTGGGAAACGAGCATTTAAAAACACACGAAATTACGTCTTAACCGGAGAAATATACAATCAGAAAGAGGAAAACCTCTCCCCTCCCAATTAACAAACAACAATTTAATAGTTACAANATAAACACAGACCCGTCATCAGTAGAACAAACTTACCCAAATTGCCAAGTATTTGGANATGGACAGCCCATACGACAGCTCACAGCGAAGCCTGGAAGTATTCCACAAGTAATCGACATTCAACCCAATGGGNCATGGCGGGCAAAACGGGCTGCT] [+] EMBL BX467724 [CGAGGCAAGAATCGGCACGATGGGCTCATATTAGCAAACACAATCTCACACAAACTGACACACACACGACACTCCGATTGTACATAATTTTATACAACTCCAACGATACATATGATTAAATCTAACTATATATATACATACTAACATAGATACCTATATCAAAATAGAGAAATTATCAGATTCATACGTTAGGTCCATTGGAGGCGCGGAAAAATCGAACTCATCGCATTCATTCCTATTACACGTGATGTATGATTTCATTGACTCGTGGCGAGAGGAATAGAAGAAATTAATACAGAACAGAACACTCTAGAGTGTTCGTGAAACTACGTTAAAACCACACCTAGTCCTAAATGAGACAGCGATTTAGCAGAAACTTCACTCCAGTTTCAAAACAAAAGTCGATCATATTGAAGTACTGGGAAACGAGCATTTAAAAACACACGAAATTACGTCTTAACCGGAGAAATATACAATCAGAAAGAGGAAAACCTCTCCCCTCCCAATTAACAAACAACAATTTAATAGTTACAANATAAACACAGACCCGTCATCAGTAGAACAAACTTACCCAAATTGCCAAGTATTTGGANATGGACAGCCCATACGACAGCTCACAGCGAAGCCTGGAAGTATTCCACAAGTAATCGACATTCAACCCAATGGGNCATGGCGGGCAAAACGGGCTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3192#0 CCGCCCACGCGTCCGATTGAAGTACTGGGAAACGAGCATTTAAAAACACACGAAATTACG 60 consensus_3192#1 ------------------------------------------------------------ consensus_3192#0 TCTTAACCGGAGAAATATACAATCAGAAAGAGGAAAACCTCTCCCCTCCCA-ATTAACAA 119 consensus_3192#1 -----------------------CGAGGCAAGAATCGGCACGATGGGCTCATATTAGCAA 37 * ** * * * * ** **** *** consensus_3192#0 ACAACAATTAATAGTTAAAAAAATAAACACAGCACCGTCATCAGTAGAAAAACTTACCAA 179 consensus_3192#1 ACACAATCTCACACAAACTGACACACACACGACACTCCGATT-GTACATAATTTTATACA 96 *** * * * * * * * * **** *** ** *** * ** *** * consensus_3192#0 ATTGCCAAGTATTTGAAATGGACAGCCCCATACACACTCACACAACCTGGAAGTAATCCA 239 consensus_3192#1 ACT-CCAACGATAC-ATATGATTAAATCTAACTATATATATACATACTAACATAGATACC 154 * * **** ** * *** * * * * * * *** ** * ** * consensus_3192#0 CAAGTAATCGACATCAACCCAATGGCATGGCGGCAAAAC-GCTCTATTGTAACTCTATCG 298 consensus_3192#1 TAT---ATCAAAATAGAGAAATTATCAGATTCATACGTTAGGTCCATTGGAGGCGCGGAA 211 * *** * ** * * * ** * * ** **** * consensus_3192#0 AAATAAACCATCTGTAACATTTGTCCGTGTGTGTGTGTG-TGTGCG-TGTGAGTGTATGG 356 consensus_3192#1 AAATCGA--ACTCATCGCATTCATTCCTAT-TACACGTGATGTATGATTTCATTGACTCG 268 **** * * * **** * * * * * *** *** * * * * ** * * consensus_3192#0 TAATTAAACAATGGAAACGATTTAACAGACAAGGCAAGACACGAGAGCAGG-ACAAACGC 415 consensus_3192#1 TGGCGAGAGGAATAGAAGAAATTAATACAGAACAGAACACTCTAGAGTGTTCGTGAAACT 328 * * * * ** * **** * * ** ** ** * **** ** consensus_3192#0 GTGGCAAACCAAAACCCAAGGAGCGTAAGGAAATAGTATATTTTATCGAGCATGCAGAC- 474 consensus_3192#1 ACGTTAAAACCACACCTA--GTCCTAAATGAGACAGCG-ATTTAGCAGAAACTTCACTCC 385 * *** * * *** * * * ** ** * ** **** ** * ** * consensus_3192#0 -ATTCGAGCGCGCTAGCAGGAAAGTCGCACAGAGCGCGCACCAACGCAGCTAAAATTATT 533 consensus_3192#1 AGTTTCAAAACAAAAGTCGATCATATTGAAGTACTGGGAAACGA-GCATTTAAAAACACA 444 ** * * ** * * * * * * * * * *** ***** * consensus_3192#0 GGAAGCAGTGGTTCTGTCAGCAGAACAGGCTGGC-GCTGGCGGTTGGCCAATTATACAGG 592 consensus_3192#1 CGAAATTACGTCTTAACCGGAGAAATATACAATCAGAAAGAGGAAAACCTCTCCCCTCCC 504 *** * * * * ** * * * * * ** ** * consensus_3192#0 ACGCGA-AACGGACAAACTAAATGTGACGAGGAAACCATAGAT--AACCTGAAACGGACG 649 consensus_3192#1 AATTAACAAACAACAATTTAATAGTTACAANATAAACACAGACCCGTCATCAGTAGAACA 564 * * ** **** *** ** ** * ** ** *** * * * * ** consensus_3192#0 CAAGCAAAGAGTTTGGGAAAGGCGAACAGCGCAGGATAGGTTCCACGAGGG---ATGGGG 706 consensus_3192#1 AACTTACCCAAATTGCCAA--GTATTTGGANATGGACAGCCCATACGACAGCTCACAGCG 622 * * * *** ** * * *** ** **** * * * * consensus_3192#0 AAAGGTAGTGTAGTTCAGCGAGCTACCGTAGCATGTAAGCCTATAGAGCAATTTTCGAAA 766 consensus_3192#1 AAGCCTGGAAGTATTCCACAAGTAATCG--ACATTCAACCCAATGGGNCA----TGGCGG 676 ** * * *** * ** * ** *** ** ** ** * ** * * consensus_3192#0 TTGATACGAGACACAGAGAGAGAGGGAGAGAGCGAGAAACGGAGAAACAGAGAGT 821 consensus_3192#1 GCAAAACGGGCTGCT---------------------------------------- 691 * *** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||