cluster # 3210

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3210 cluster # 3210 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3210#0 length = 699 sequences # 2

consensus_3210#1 length = 591 sequences # 1

consensusID : consensus_3210#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 699
fasta sequence

                              [CCGGACAAAACCAAACCAGAGCAAGCAAAAGACAGACAAAAAAAAAGAAAGAGGGAGAAAACGCGGACGGCGGCACATCATGGGAAACATCATTCCGTGTGGAAACAACAAAAGCTTCCAGCAGATGGGGACGATTTCGATTTGTTTTTTTTTGTTGTTGTGTTTGTTGGCATCCTGTAGGGGGAGGAAGAATCGCCTAGCCCCTGGCAAACCATCGCTGGACGGGGCGGGAAACGAAACGACGCACGCGGTGGTGTACTAGGTGGGTGGATGGCGGCTGTAAAGTAAATTATAAACGTAAATTTTTACTCTCTTTAACACTGATCACTAATGCTACACACCCATACAGATACATACAACTTCACACACACACAAACACCTACATTCGACGGTTAGTGGATGATCAAGTTCACGCCGCCTATGGGGGACGTTGTGTCCGCACGGGAATGTAGTGAAAACAGCTGCTAATTGCGTTTCTGCCAGCGTCGCTGCGCATTTGCTTGCGTATAAGGCCTTAGTCGGTGCATCGGCCAGAGTACTGCCGATCGCTTTTATTAACCATCGCCACATGGATC-CCAACCTGCTCGGTTGTTTCGTACGGCCTCTGCCTGAGCCTTTGCTTTTGCCAAATGTTTTTCA-TTTCACAATCACGCAAATTGAATGATAATGCCATTGAAAAAGTATTTGTACGCTGCTACT]

[+] EMBL BM612477             [CCGGACAAAACCAAACCAGAGCAAGCAAAAGACAGACAAAAAAAAAGAAAGAGGGAGAAAACGCGGACGGCGGCACATCATGGGAAACATCATTCCGTGTGGAAACAACAAAAGCTTCCAGCAGATGGGGACGATTTCGATTTGTTTTTTTTTGTTGTTGTGTTTGTTGGCATCCTGTAGGGGGAGGAAGAATCGCCTAGCCCCTGGCAAACCATCGCTGGACGGGGCGGGAAACGAAACGACGCACGCGGTGGTGTACTAGGTGGGTGGATGGCGGCTGTAAAGTAAATTATAAACGTAAATTTTTACTCTCTTTAACACTGATCACTAATGCTACACACCCATACAGATACATACAACTTCACACACACACAAACACCTACATTCGACGGTTAGTGGATGATCAAGTTCACGCCGCCTATGGGGGACGTTGTGTCCGCACGGGAATGTAGTGAAAACAGCTGCTAATTGCGTTTCTGCCAGCGTCGCTGCGCATTTGCTTGCGTATAAGGCCTTAGTCGGTGCATCGGCCAGAGTACTGCCGATCGCTTTTATTAACCATCGCCACATGGATC CCAACCTGCTCGGTTGTTTCGTACGGCCTCTGCCTGAGCCTTTGCTTTTGCCAAATGTTTTTCA TTTCACAATCACGCAAATTGAATG                                    ]
[+] EMBL BM641467             [                                                   ccGGAGAAAACGCGGACGGCGGCACATCATGGGAAACATCATTCCGTGTGGAAACAACAAAAGCTTCCAGCAGATGGGGACGATTTCGATTTGTTTTTTTTTGTTGTTGTGTTTGTTGGCATCCTGTAGGGGGAGGAAGAATCGCCTAGCCCCTGGCAAACCATCGCTGGACGGGGCGGGAAACGAAACGACGCACGCGGTGGTGTACTAGGTGGGTGGATGGCGGCTGTAAAGTAAATTATAAACGTAAATTTTTACTCTCTTTAACACTGATCACTAATGCTACACACCCATACAGATACATACAACTTCACACACACACAAACACCTACATTCGACGGTTAGT GATGATCAAGTTCACGCCGCCTAT GGGGACGTTGTGTCCGCACGGGAATGTAGTGAAAACAGCTGCTAATTGCGTTTCTGCCAGCGTCGCTGCGCATTTGCTTGCGTATAA GCCTTAGTCGGTGCATCGGCCAGAGTACTGCCGATCGCTTTTATTAACCATCGCCACATGGATCACCAA CTGCTCGGTTGTTTCGTACGGCCTCTGCCTGAGCCTTTGCTTTTGCCAAATGTTTTTCATTTTCACAATCACGCAAATTGAATGATAATGCCATTGAAAAAGTATTTGTACGCTGCTACT]




>consensus_3210#0
CCGGACAAAACCAAACCAGAGCAAGCAAAAGACAGACAAAAAAAAAGAAAGAGGGAGAAA
ACGCGGACGGCGGCACATCATGGGAAACATCATTCCGTGTGGAAACAACAAAAGCTTCCA
GCAGATGGGGACGATTTCGATTTGTTTTTTTTTGTTGTTGTGTTTGTTGGCATCCTGTAG
GGGGAGGAAGAATCGCCTAGCCCCTGGCAAACCATCGCTGGACGGGGCGGGAAACGAAAC
GACGCACGCGGTGGTGTACTAGGTGGGTGGATGGCGGCTGTAAAGTAAATTATAAACGTA
AATTTTTACTCTCTTTAACACTGATCACTAATGCTACACACCCATACAGATACATACAAC
TTCACACACACACAAACACCTACATTCGACGGTTAGTGGATGATCAAGTTCACGCCGCCT
ATGGGGGACGTTGTGTCCGCACGGGAATGTAGTGAAAACAGCTGCTAATTGCGTTTCTGC
CAGCGTCGCTGCGCATTTGCTTGCGTATAAGGCCTTAGTCGGTGCATCGGCCAGAGTACT
GCCGATCGCTTTTATTAACCATCGCCACATGGATCCCAACCTGCTCGGTTGTTTCGTACG
GCCTCTGCCTGAGCCTTTGCTTTTGCCAAATGTTTTTCATTTCACAATCACGCAAATTGA
ATGATAATGCCATTGAAAAAGTATTTGTACGCTGCTACT

consensusID : consensus_3210#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [CCGCCCACGCGTCCGCAAGGATCTGCTGGACCAGATCGGTGAGGGTGGCCGCAACATCCACGAGATCGAGAAGTCGCGCAAGCGCCTGGAGGCCGAGAAGGACGAGCTGCAGGCCGCCCTCGAGGAGGCTGAAGCCGCCCTGGAGCAGGAGGAGAACAAGGTTCTGCGTGCTCAGCTTGAACTGTCTCAGGTCCGTCAAGAAATTGACCGCCGCATCCAGGAGAAGGAAGAAGAGTTCGAGAACACTCGCAAGAACCACCAGCGCGCCCTGGACTCGATGCAGGCTTCCCTGGAGGCCGAAGCCAAGGGCAAGGCCGAGGCTCTGCGTATGAAGAAGAAGCTGGAAGCCGACATCAACGAGCTGGAGATTGCTCTGGATCACGCCAACAAGGCTAACGCTGAGGCCCAGAAGAACATCAAGCGCTACCAGCAGCAGCTGAAGGACGTCCAGAGCGCCCTGGAGGAGGAACAGCGCGCCCGCGACGATGCCCGCGAGCAGCTGGGTATCTCGGAGCGCCGTGCCAACGCTCTCCAGAACGAACTGGAGGAGTCGCGCACCCTGTTGGAGCAGGCCGACCGTGGGCCGTCGCC]

[+] EMBL BM625696             [CCGCCCACGCGTCCGCAAGGATCTGCTGGACCAGATCGGTGAGGGTGGCCGCAACATCCACGAGATCGAGAAGTCGCGCAAGCGCCTGGAGGCCGAGAAGGACGAGCTGCAGGCCGCCCTCGAGGAGGCTGAAGCCGCCCTGGAGCAGGAGGAGAACAAGGTTCTGCGTGCTCAGCTTGAACTGTCTCAGGTCCGTCAAGAAATTGACCGCCGCATCCAGGAGAAGGAAGAAGAGTTCGAGAACACTCGCAAGAACCACCAGCGCGCCCTGGACTCGATGCAGGCTTCCCTGGAGGCCGAAGCCAAGGGCAAGGCCGAGGCTCTGCGTATGAAGAAGAAGCTGGAAGCCGACATCAACGAGCTGGAGATTGCTCTGGATCACGCCAACAAGGCTAACGCTGAGGCCCAGAAGAACATCAAGCGCTACCAGCAGCAGCTGAAGGACGTCCAGAGCGCCCTGGAGGAGGAACAGCGCGCCCGCGACGATGCCCGCGAGCAGCTGGGTATCTCGGAGCGCCGTGCCAACGCTCTCCAGAACGAACTGGAGGAGTCGCGCACCCTGTTGGAGCAGGCCGACCGTGGGCCGTCGCC]




>consensus_3210#1
CCGCCCACGCGTCCGCAAGGATCTGCTGGACCAGATCGGTGAGGGTGGCCGCAACATCCA
CGAGATCGAGAAGTCGCGCAAGCGCCTGGAGGCCGAGAAGGACGAGCTGCAGGCCGCCCT
CGAGGAGGCTGAAGCCGCCCTGGAGCAGGAGGAGAACAAGGTTCTGCGTGCTCAGCTTGA
ACTGTCTCAGGTCCGTCAAGAAATTGACCGCCGCATCCAGGAGAAGGAAGAAGAGTTCGA
GAACACTCGCAAGAACCACCAGCGCGCCCTGGACTCGATGCAGGCTTCCCTGGAGGCCGA
AGCCAAGGGCAAGGCCGAGGCTCTGCGTATGAAGAAGAAGCTGGAAGCCGACATCAACGA
GCTGGAGATTGCTCTGGATCACGCCAACAAGGCTAACGCTGAGGCCCAGAAGAACATCAA
GCGCTACCAGCAGCAGCTGAAGGACGTCCAGAGCGCCCTGGAGGAGGAACAGCGCGCCCG
CGACGATGCCCGCGAGCAGCTGGGTATCTCGGAGCGCCGTGCCAACGCTCTCCAGAACGA
ACTGGAGGAGTCGCGCACCCTGTTGGAGCAGGCCGACCGTGGGCCGTCGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3210#0      CCGGACAAAACCAAACCAGAGCAAGCAAAAGACAGACAAAAAAAAAGAAAGAGGGAGAAA 60
consensus_3210#1      -------------------------CCGCCCACGCGTCCGCAAGGATCTGCTGGACCAGA 35
                                               *     **        **  *      **   * *

consensus_3210#0      ACGCGGACGGCGGC-ACATCATGGGAAACATCATTCCGTGTGGAAACAACAAAAGCTTCC 119
consensus_3210#1      TCGGTGAGGGTGGCCGCAACATCCACGAGATCG--------AGAAGTCGCGCAAGCGCCT 87
                       **  ** ** ***  ** ***     * ***          ***    *  ****  * 

consensus_3210#0      AGCAGATGGGGACGATTTCGATTTGTTTTTTTTTGTTGTTGTGTTTGTTGGCATCCTGTA 179
consensus_3210#1      GGAGGCCGAGAAGGA---CGAGCTGCAGGCCGCCCTCGAGGAGGCTGAAGCCGCCCTGGA 144
                       *  *  * * * **   ***  **          * *  * *  **  * *  **** *

consensus_3210#0      GGGGGAGGA-----AGAATCGCCTAGCCCCTGGCAAACCATCGCTGGACGGGGCGGGAAA 234
consensus_3210#1      GCAGGAGGAGAACAAGGTTCTGCGTGCTCAGCTTGAACTGTCTCAGGTCCGT-CAAGAAA 203
                      *  ******     **  **  *  ** *      ***  ** * ** * *  *  ****

consensus_3210#0      CGAAACGACGCACGCGGTGGTGTACTAGGTGGGTGGATGGCGGCTGTAAAGTAAATTATA 294
consensus_3210#1      TTGACCGCCGCATCCAGGAGAAGGAAGAAGAGTTCGAGAACACTCGCAAG---AACCACC 260
                         * ** ****  * *  *           * * **   *    * **    **  *  

consensus_3210#0      AACGTAAATTTTTACTCTCTTTAA----CACTGATCACTAATGCTACACACCCATACAGA 350
consensus_3210#1      AGCGCGC-CCTGGACTCGATGCAGGCTTCCCTGGAGGCCGAAGCCAAGGGCAAGGCCGAG 319
                      * **      *  ****  *  *     * ***    *  * ** *    *     *   

consensus_3210#0      TACATACAACTTCACACACACACAAACACCTACATTCGACGGTTAGTGGATGATCAAGTT 410
consensus_3210#1      GCTCTGCGTATGAAGAAGAAGCTGGAAGCCGACATCAACGAGCTGGAGATTGCTCTGGAT 379
                          * *   *  * *   *     *  ** ****      * * * *  ** **  * *

consensus_3210#0      CACGCCGCCTATGGGGGACGTTGTG-TCCGCACGGGAATGTAGTGAAAACAGCTGCTAAT 469
consensus_3210#1      CACGCCAAC-AAGGCTAACGCTGAGGCCCAGAAGAACATCAAGCGCTACCAGCAGC-AGC 437
                      ******  * * **   *** ** *  **  * *   **  ** *  * **** ** *  

consensus_3210#0      TGCGTTTCTGCCAGCGTCGCTGCGCATTTGCTTGCGTATAAGGCCTTAGTCGGTGCAT-C 528
consensus_3210#1      TGAAGGACGTCCAGAG-CGCCCTGGAGGAG---GAACAGCGCGCCCGCGACGATGCCCGC 493
                      **     *  **** * ***   * *   *   *   *    ***   * ** ***   *

consensus_3210#0      GGCCAG---AGTACTGCCGATCGCTTTTATTAACCATCGCCACATGGATCCCAAC---CT 582
consensus_3210#1      GAGCAGCTGGGTATCTCGGAGCGCCGT-GCCAACGCTCTCCAGAACGAACTGGAGGAGTC 552
                      *  ***    ***   * ** ***  *    ***  ** *** *  ** *   *      

consensus_3210#0      GCTCGGTTGTTTCGTACGGCCTCTGCCTGAGCCTTTGCTTTTGCCAAATGTTTTTCATTT 642
consensus_3210#1      GCGCACCCTGTTGGAGCAGGCCGACCGTGGGCCGTCGCC--------------------- 591
                      ** *      ** *  * * *    * ** *** * **                      

consensus_3210#0      CACAATCACGCAAATTGAATGATAATGCCATTGAAAAAGTATTTGTACGCTGCTACT 699
consensus_3210#1      ---------------------------------------------------------