cluster # 3215

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Anopheles gambiae
cluster # 3215 cluster # 3215 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3215#0 length = 631 sequences # 2

consensus_3215#1 length = 605 sequences # 1

consensusID : consensus_3215#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 631
fasta sequence

                              [CCGCCCACGCGTCCGCTCGCCCGGAACGGCACGTAGCGCGTCACTCTCTCCGTGGTACAGTCCCAGTTGGAATACCGTTGGAACGCACGTTTACTCTGAGTGTTTTAGTGTGAAGGATATCGTGCCTTAGTAGCAA--ACACACACGCACAACGTCCTCTCCTTGATATTGTCCGGTTCTCTGCAGCGCGTCTTCCGTGAGATAGGAACGAAAGGGAAAACCCACAAACCATGGGATCCGGCGGTAGAATGGACTGCTGCGGGCAGTGCGTAAAGTACAGCATGTTTGTGGCCAACTTTGTCATCTTCCTTGGCGGTGCGATCGTGTTCAGTTTGGGGATCTGGACGCTGGTGGATAAACACTTCATCAACGAGCTGCTCGGCACGAACCTGTTCTCCGGTGCGGTGTACGTGCTGATCGCCACCTCCGCCCTGCTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCGGCCAAGGAGTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATCTTCGTGACGATGCTGATCGGCGGCATCCTGGGGGTACGTGTTCCGCGAGAAAGTGTCGCAAACGATGGGCGACGAGATGCGCTCGTCCATGAGCCTGTACGGTTCGCGC]

[+] EMBL BM618641             [CCGCCCACGCGTCCGCTCGCCCGGAACGGCACGTAGCGCGTCACTCTCTCCGTGGTACAGTCCCAGTTGGAATACCGTTGGAACGCACGTTTACTCTGAGTGTTTTAGTGTGAAGGATATCGTGCCTTAGTAGCAA  ACACACACGCACAACGTCCTCTCCTTGATATTGTCCGGTTCTCTGCAGCGCGTCTTCCGTGAGATAGGAACGAAAGGGAAAACCCACAAACCATGGGATCCGGCGGTAGAATGGACTGCTGCGGGCAGTGCGTAAAGTACAGCATGTTTGTGGCCAACTTTGTCATCTTCCTTGGCGGTGCGATCGTGTTCAGTTTGGGGATCTGGACGCTGGTGGATAAACACTTCATCAACGAGCTGCTCGGCACGAACCTGTTCTCCGGTGCGGTGTACGTGCTGATCGCCACCTCCGCCCTGCTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCGGCCAAGGAGTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATCTTCGTGACGATGCTGATCGGCGGCATCCTGGGGGTACGTGTTCCGCGAGAAAGTGTCGCAAACGATGGGCGACGAGATGCGCTCGTCCATGAGCCTGTACGGTTCGCGC]
[+] EMBL BM629291             [CCGCCCACGCGTCCGCCCACGCGTCCGGGCACGTAGCGCGTCACTCTCTCCGTGGTACAGTCCCAGTTGGAATACGGTTGGAACGCACGTTTACTCTGAGTGTTTTAGTGTGAAGGATATCGTGCCTTAGTAGCAAACACACACACGCACAACGTCCTCTCCTTGATATTGTCCGGTTCTCTGCAGCGCGTCTTCCGTGAGATAGGAACGAAAGGGAAAACCCACAAACCATGGGATCCGGCGGTAGAATGGACTGCTGCGGGCAGTGCGTAAAGTACAGCATGTTTGTGGCCAACTTTGTCATCTTCCTTGGCGGTGCGATCGTGTTCAGTTTGGGGATCTGGACGCTGGTGGATAAACACTTCATCAACGAGCTGCTCGGCACGAACCTGTTCTCCGGTGCGGTGTACGTGCTGATCGCCACCTCCGCCCTGGTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCGGCCAAGGAGTACAAGTGTATGCTGC                                                                                                                                          ]




>consensus_3215#0
CCGCCCACGCGTCCGCTCGCCCGGAACGGCACGTAGCGCGTCACTCTCTCCGTGGTACAG
TCCCAGTTGGAATACCGTTGGAACGCACGTTTACTCTGAGTGTTTTAGTGTGAAGGATAT
CGTGCCTTAGTAGCAAACACACACGCACAACGTCCTCTCCTTGATATTGTCCGGTTCTCT
GCAGCGCGTCTTCCGTGAGATAGGAACGAAAGGGAAAACCCACAAACCATGGGATCCGGC
GGTAGAATGGACTGCTGCGGGCAGTGCGTAAAGTACAGCATGTTTGTGGCCAACTTTGTC
ATCTTCCTTGGCGGTGCGATCGTGTTCAGTTTGGGGATCTGGACGCTGGTGGATAAACAC
TTCATCAACGAGCTGCTCGGCACGAACCTGTTCTCCGGTGCGGTGTACGTGCTGATCGCC
ACCTCCGCCCTGCTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCGGCCAAGGAGTAC
AAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATCTTCGTGACGATGCTGATC
GGCGGCATCCTGGGGGTACGTGTTCCGCGAGAAAGTGTCGCAAACGATGGGCGACGAGAT
GCGCTCGTCCATGAGCCTGTACGGTTCGCGC

consensusID : consensus_3215#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [CCGCCCACGCGTCCGACGGCACGTAGCGCGTCACTCTCTCCGTGGTACAGTCCCAGTTGGAATACGGTTGGAACGCACGTTTACTCTGAGTGTTTTAGTGTGAAGGATTTCGTGCCTTAGTAGCAAACACATACACACGCACAACGTCCTCTCCTTGATATTGTCCGGTTCTCTGCATCGCGTCTTCCGTGAGATAGGAACGAAAAGGGAAACCCACCAACCATGGGATCCGGCGGTAGAATGGACTGCTGCGGGCAGTGCGTAAAGTACAGCATGTTTGTGGCCAACTTTGTCATCTTCCTTGGCGGTGCGATCGTGTTCAGTTTGGGCATCTGGACGCTGGTGGACAAACACTTCATCAACGAGCTGCTCGGCACGAACCTGTTCTCCGGTGCGGTGTACGTGCTGATCGCCACCTCCGCCCTGGTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCGGCCAAGGAAGTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATCTTCGTGACGATGCTGATCGGCGGCATCCTGGGGGTACGTGTTCCGCGAGAAGGTATCGCAAACGATGGGCGACGAGATGCGCTCGTCC]

[+] EMBL BM635291             [CCGCCCACGCGTCCGACGGCACGTAGCGCGTCACTCTCTCCGTGGTACAGTCCCAGTTGGAATACGGTTGGAACGCACGTTTACTCTGAGTGTTTTAGTGTGAAGGATTTCGTGCCTTAGTAGCAAACACATACACACGCACAACGTCCTCTCCTTGATATTGTCCGGTTCTCTGCATCGCGTCTTCCGTGAGATAGGAACGAAAAGGGAAACCCACCAACCATGGGATCCGGCGGTAGAATGGACTGCTGCGGGCAGTGCGTAAAGTACAGCATGTTTGTGGCCAACTTTGTCATCTTCCTTGGCGGTGCGATCGTGTTCAGTTTGGGCATCTGGACGCTGGTGGACAAACACTTCATCAACGAGCTGCTCGGCACGAACCTGTTCTCCGGTGCGGTGTACGTGCTGATCGCCACCTCCGCCCTGGTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCGGCCAAGGAAGTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATCTTCGTGACGATGCTGATCGGCGGCATCCTGGGGGTACGTGTTCCGCGAGAAGGTATCGCAAACGATGGGCGACGAGATGCGCTCGTCC]




>consensus_3215#1
CCGCCCACGCGTCCGACGGCACGTAGCGCGTCACTCTCTCCGTGGTACAGTCCCAGTTGG
AATACGGTTGGAACGCACGTTTACTCTGAGTGTTTTAGTGTGAAGGATTTCGTGCCTTAG
TAGCAAACACATACACACGCACAACGTCCTCTCCTTGATATTGTCCGGTTCTCTGCATCG
CGTCTTCCGTGAGATAGGAACGAAAAGGGAAACCCACCAACCATGGGATCCGGCGGTAGA
ATGGACTGCTGCGGGCAGTGCGTAAAGTACAGCATGTTTGTGGCCAACTTTGTCATCTTC
CTTGGCGGTGCGATCGTGTTCAGTTTGGGCATCTGGACGCTGGTGGACAAACACTTCATC
AACGAGCTGCTCGGCACGAACCTGTTCTCCGGTGCGGTGTACGTGCTGATCGCCACCTCC
GCCCTGGTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCGGCCAAGGAAGTACAAGTG
TATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATCTTCGTGACGATGCTGATCGGCGG
CATCCTGGGGGTACGTGTTCCGCGAGAAGGTATCGCAAACGATGGGCGACGAGATGCGCT
CGTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3215#0      CCGCCCACGCGTCCGCTCGCCCGGAACGGCACGTAGCGCGTCACTCTCTCCGTGGTACAG 60
consensus_3215#1      CCGCCCACGCGTCCG----------ACGGCACGTAGCGCGTCACTCTCTCCGTGGTACAG 50
                      ***************          ***********************************

consensus_3215#0      TCCCAGTTGGAATACCGTTGGAACGCACGTTTACTCTGAGTGTTTTAGTGTGAAGGATAT 120
consensus_3215#1      TCCCAGTTGGAATACGGTTGGAACGCACGTTTACTCTGAGTGTTTTAGTGTGAAGGATTT 110
                      *************** ****************************************** *

consensus_3215#0      CGTGCCTTAGTAGCAAACACA----CACGCACAACGTCCTCTCCTTGATATTGTCCGGTT 176
consensus_3215#1      CGTGCCTTAGTAGCAAACACATACACACGCACAACGTCCTCTCCTTGATATTGTCCGGTT 170
                      *********************    ***********************************

consensus_3215#0      CTCTGCAGCGCGTCTTCCGTGAGATAGGAACGAAAGGGAAAACCCACAAACCATGGGATC 236
consensus_3215#1      CTCTGCATCGCGTCTTCCGTGAGATAGGAACGAAAAGGGAAACCCACCAACCATGGGATC 230
                      ******* *************************** ** ******** ************

consensus_3215#0      CGGCGGTAGAATGGACTGCTGCGGGCAGTGCGTAAAGTACAGCATGTTTGTGGCCAACTT 296
consensus_3215#1      CGGCGGTAGAATGGACTGCTGCGGGCAGTGCGTAAAGTACAGCATGTTTGTGGCCAACTT 290
                      ************************************************************

consensus_3215#0      TGTCATCTTCCTTGGCGGTGCGATCGTGTTCAGTTTGGGGATCTGGACGCTGGTGGATAA 356
consensus_3215#1      TGTCATCTTCCTTGGCGGTGCGATCGTGTTCAGTTTGGGCATCTGGACGCTGGTGGACAA 350
                      *************************************** ***************** **

consensus_3215#0      ACACTTCATCAACGAGCTGCTCGGCACGAACCTGTTCTCCGGTGCGGTGTACGTGCTGAT 416
consensus_3215#1      ACACTTCATCAACGAGCTGCTCGGCACGAACCTGTTCTCCGGTGCGGTGTACGTGCTGAT 410
                      ************************************************************

consensus_3215#0      CGCCACCTCCGCCCTGCTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCGGCCAAGGA 476
consensus_3215#1      CGCCACCTCCGCCCTGGTTTGTCTGCTGTCGTTCTTCGGATGCATGGGCGCGGCCAAGGA 470
                      **************** *******************************************

consensus_3215#0      -GTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATCTTCGTGACGATGC 535
consensus_3215#1      AGTACAAGTGTATGCTGCTGACGTACTTCATCCTAGTGTTTCTCATCTTCGTGACGATGC 530
                       ***********************************************************

consensus_3215#0      TGATCGGCGGCATCCTGGGGGTACGTGTTCCGCGAGAAAGTGTCGCAAACGATGGGCGAC 595
consensus_3215#1      TGATCGGCGGCATCCTGGGGGTACGTGTTCCGCGAGAAGGTATCGCAAACGATGGGCGAC 590
                      ************************************** ** ******************

consensus_3215#0      GAGATGCGCTCGTCCATGAGCCTGTACGGTTCGCGC 631
consensus_3215#1      GAGATGCGCTCGTCC--------------------- 605
                      ***************