cluster # 3221

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Anopheles gambiae
cluster # 3221 cluster # 3221 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3221#0 length = 677 sequences # 1

consensus_3221#1 length = 502 sequences # 1
consensus_3221#2 length = 185 sequences # 1

consensusID : consensus_3221#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGACGATGATAATGGAATGGAGCTATTGGTGCACAACAAGATCATCAGTTTGGATCTACCAGTTAAGGAGGTGTACAAGAAAATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGGCCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGAGGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAAGGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCAGGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTGTCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAGCAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAACGATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTTCGGCGGACCGGAGTACGTACAGGCGCTACTATCTTGCACACACTGCTCGAATGTCCGGTGCAATCCATCCGTACTGC]

[+] EMBL BM598367             [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGACGATGATAATGGAATGGAGCTATTGGTGCACAACAAGATCATCAGTTTGGATCTACCAGTTAAGGAGGTGTACAAGAAAATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGGCCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGAGGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAAGGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCAGGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTGTCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAGCAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAACGATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTTCGGCGGACCGGAGTACGTACAGGCGCTACTATCTTGCACACACTGCTCGAATGTCCGGTGCAATCCATCCGTACTGC]




>consensus_3221#0
CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGACGATGATAATGGAATGGA
GCTATTGGTGCACAACAAGATCATCAGTTTGGATCTACCAGTTAAGGAGGTGTACAAGAA
AATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGG
CCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGA
GGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAA
GGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCA
GGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTG
TCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAG
CAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAAC
GATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTT
CGGCGGACCGGAGTACGTACAGGCGCTACTATCTTGCACACACTGCTCGAATGTCCGGTG
CAATCCATCCGTACTGC

consensusID : consensus_3221#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence

                              [CCGCCCACGCGTCCGAGAAAATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGGCCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGAGGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAAGGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCAGGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTGTCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAGCAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAACGATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTTCGG]

[+] EMBL BM649974             [CCGCCCACGCGTCCGAGAAAATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGGCCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGAGGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAAGGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCAGGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTGTCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAGCAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAACGATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTTCGG]




>consensus_3221#1
CCGCCCACGCGTCCGAGAAAATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCA
TTGTGTATCGTATGCGCGGCCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCA
ACGCCAAGAGCCAAGAGGAGGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAG
CCGATTGTGGAGGACTCAAGGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAA
AGTCACGTACCCTGTTGCAGGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCC
GTTGCCAGGAGGTGCTCTGTCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGT
TGCAGCTGTGCTTGCAAAGCAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGC
TGCTAGAGATTATGGAAACGATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCC
TCCAGTTTTCGCTCACGTTCGG

consensusID : consensus_3221#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 185
fasta sequence

                              [CCAGCGTTGAACTGTTCCTCCACTGCAGGTTCGTTCTTGGCGTTCTTCTGGCGCTTGACGTTCTTCCGCGGTTGCTCTTGCTGCGCTTCTTGCTCAACACATCCTCCTCGCCGGCCTTCAGCTCGCGCTTCTTGCCATGCGGCAGCAGGTAGTGGCTCTCGTCCCCCTGCCGGAAGGGCGACGCA]

[+] EMBL CNS095DC             [CCAGCGTTGAACTGTTCCTCCACTGCAGGTTCGTTCTTGGCGTTCTTCTGGCGCTTGACGTTCTTCCGCGGTTGCTCTTGCTGCGCTTCTTGCTCAACACATCCTCCTCGCCGGCCTTCAGCTCGCGCTTCTTGCCATGCGGCAGCAGGTAGTGGCTCTCGTCCCCCTGCCGGAAGGGCGACGCA]




>consensus_3221#2
CCAGCGTTGAACTGTTCCTCCACTGCAGGTTCGTTCTTGGCGTTCTTCTGGCGCTTGACG
TTCTTCCGCGGTTGCTCTTGCTGCGCTTCTTGCTCAACACATCCTCCTCGCCGGCCTTCA
GCTCGCGCTTCTTGCCATGCGGCAGCAGGTAGTGGCTCTCGTCCCCCTGCCGGAAGGGCG
ACGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3221#0      CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGACGATGATAATGGAATGGA 60
consensus_3221#1      ------------------------------------------------------------
consensus_3221#2      ------------------------------------------------------------
                                                                                  

consensus_3221#0      GCTATTGGTGCACAACAAGATCATCAGTTTGGATCTACCAGTTAAGGAGGTGTACAAGAA 120
consensus_3221#1      -----------------------------------------CCGCCCACGCGTCCGAGAA 19
consensus_3221#2      ------------------------------------------------------------
                                                                                  

consensus_3221#0      AATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGG 180
consensus_3221#1      AATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGG 79
consensus_3221#2      ------------------------------------------------------------
                                                                                  

consensus_3221#0      CCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGA 240
consensus_3221#1      CCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGA 139
consensus_3221#2      ------------------------------------------------------------
                                                                                  

consensus_3221#0      GGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAA 300
consensus_3221#1      GGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAA 199
consensus_3221#2      ------------------------------------------------------------
                                                                                  

consensus_3221#0      GGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCA 360
consensus_3221#1      GGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCA 259
consensus_3221#2      ------------------------------------------------------------
                                                                                  

consensus_3221#0      GGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTG 420
consensus_3221#1      GGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTG 319
consensus_3221#2      -----------------------CCAGCGTTGAACTGTTCCTCCACT-GCAGGTTCGTTC 36
                                               *****  ** *** **    *  * **** *  * 

consensus_3221#0      TCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAG 480
consensus_3221#1      TCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAG 379
consensus_3221#2      TTGGC--GTTCTTCTGGCGCTTGACGTTCTTCCGCGGTTGCTCTTGCTGCGCTTCTTGCT 94
                      *  **  *  **    **  *  **   ** * *  * ** *   **** ****      

consensus_3221#0      CAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAAC 540
consensus_3221#1      CAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAAC 439
consensus_3221#2      CAACACATCC--TCCTCGCCGGCCTTCAGCTC----GC-GCTTCTTGCCATGCGGCAGCA 147
                      ****  *  *  * ***  * * *  ***       ** *** ** *  **   * *   

consensus_3221#0      GATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTT 600
consensus_3221#1      GATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTT 499
consensus_3221#2      GGTAGTGGCTCTCGTC-CCCCTGCCGGAAGGGCGACGCA--------------------- 185
                      * *  ** *    * * *  ***       **   **                       

consensus_3221#0      CGGCGGACCGGAGTACGTACAGGCGCTACTATCTTGCACACACTGCTCGAATGTCCGGTG 660
consensus_3221#1      CGG--------------------------------------------------------- 502
consensus_3221#2      ------------------------------------------------------------
                                                                                  

consensus_3221#0      CAATCCATCCGTACTGC 677
consensus_3221#1      -----------------
consensus_3221#2      -----------------