cluster # 3231

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Anopheles gambiae
cluster # 3231 cluster # 3231 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3231#0 length = 1331 sequences # 2

consensus_3231#1 length = 524 sequences # 1

consensusID : consensus_3231#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1331
fasta sequence

                              [AATTCGTGAAGATTCTGGGAGTAAACTTGTGCTAAAATGAGTTTGACGGCAGCGCGCCCTTTGGTCAGTGTGTACTCTGACAAAAATGAGGCGGTGAAGGATAAGGGAGTTGCCTTGCCGGCAATTTTCAAGGCCCCGATCCGTCCGGATGTGGTGAACGAGGTGTCGCAGCTGATGCGCCGCAACCGTCGCCAGGCGTACGCCGTAGAGCGAGGCCGCCGGTCACCAGACGTCGGCCGAATCGTGGGGTACCGGTCACGCTGTGGCCCGTATCCCGCGTGTCCGCGGCGGTGGTACCCACCGTTCCGGCCAGGGTGCGTACGGTAACATGTGCCGTGGTGGACGCATGTTCGCCCCGACCAAGCCGTGGCGCCGTTGGCACCGCAAGATCAACATCAACCTGAAGCGCTACGCTCTGGTTTCGGCCCTCGCTGCCAGCGGTGTCCCTGCCCTGGTGCAGTCGCGCGGTCATATCATCGACGGTATCTCTGAGCTGCCGCTGGTCGTGTCCGACGACATCCAGAAGTTCCAGAAGACCAAGCAGGCCGTCACCTTCCTGCGCCGCTCGAAGGTTTGGGCCGACGTGCAGAAGGTGTACAAGTCGCAGCGTCTGCGCGCCGGTCGCGGTAAGATGCGCAACCGTCGCCGTGTCCAGCGTCGCGGTCCGCTGATCATCTACGATCGGGATGAGGGTCTGCGCCGTGCGTTCCGTAACATTCCCGGCGTCGATACGATGCGGGTGAGCAAGATGAACCTGCTGAAGCTGATCCCGATCATGGCCAACACCGATCTGACCCGTCTGCTGAAGTCGGAGGAAATCCGTCGCGTGCTGCGAGCGCCGAGAAGGAAGGTGTACCGACGCGTGCGCCGTCTGAACCCGCTCACCAACAAGGAGCAGATGCTGAAGCTGAACCCGTACGCCGCGGTCACGAAGCGCCGTGCCCAGCTGATGACGAAGTGCGCAGGTGCGAGCGCCTGGTGGCGAAGGCGGAAGCCAAGAAGAAGCCACTGGATGCCAAGCACCGGGCGGTCGTGTTCGTGGAGAAGCAGACGCGCCGCCTGCAGAAGATGGAGAAGATCAAGGCGGCCCGCAAGGAGAAGGTGGACAAGAAGGTGGCCGATTTTAAGGCGTCCGGCAAGAAGCCGTCGCTGAAGAAGGTGCGCCCCGCCAAGGAAGCCGCGAAACCAGTAAAGAAAGCCGTTAAGAAGGTAGAGAAGAAGTAGAGAGTAAACCAACCAACCAACCACCTCCCCCTCCAAAATGTTCTGTTTAGTTGGTAAGGATTAATGATATAAAAGTAAAAAAAAAATAAATTTAAACGTGCTAAAGC]

[+] EMBL CNS08CZS             [AATTCGTGAAGATTCTGGGAGTAAACTTGTGCTAAAATGAGTTTGACGGCAGCGCGCCCTTTGGTCAGTGTGTACTCTGACAAAAATGAGGCGGTGAAGGATAAGGGAGTTGCCTTGCCGGCAATTTTCAAGGCCCCGATCCGTCCGGATGTGGTGAACGAGGTGTCGCAGCTGATGCGCCGCAACCGTCGCCAGGCGTACGCCGTAGAGCGAGGCCGCCGGTCACCAGACGTCGGCCGAATCGTGGGGTACCGGTCACGCTGTGGCCCGTATCCCGCGTGTCCGCGGCGGTGGTACCCACCGTTCCGGCCAGGGTGCGTACGGTAACATGTGCCGTGGTGGACGCATGTTCGCCCCGACCAAGCCGTGGCGCCGTTGGCACCGCAAGATCAACATCAACCTGAAGCGCTACGCTCTGGTTTCGGCCCTCGCTGCCAGCGGTGTCCCTGCCCTGGTGCAGTCGCGCGGTCATATCATCGACGGTATCTCTGAGCTGCCGCTGGTCGTGTCCGACGACATCCAGAAGTTCCAGAAGACCAAGCAGGCCGTCACCTTCCTGCGCCGCTCGAAGGTTTGGGCCGACGTGCAGAAGGTGTACAAGTCGCAGCGTCTGCGCGCCGGTCGCGGTAAGATGCGCAACCGTCGCCGTGTCCAGCGTCGCGGTCCGCTGATCATCTACGATCGGGATGAGGGTCTGCGCCGTGCGTTCCGTAACATTCCCGGCGTCGATACGATGCGGGTGAGCAAGATGAACCTGCTGAAGCTGATCCCGATCATGGCCAACACCGATCTGACCCGTCTGCTGAAGTCGGAGGAAATCCGTCGCGTGCTGCGAGCGCCGAGAAGGAAGGTGTACCGACGCGTGCGCCGTCTGAACCCGCTCACCAACAAGGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CNS08CZT             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATCATCGACGGTATCTCTGAGCTGCCGCTGGTCGTGTCCGACGACATCCAAAAATTCCAGAAGACCAAGCAGGCCGTCACCTTCCTGCGCCGCTCGAAGGTTTGGGCCGACGTGCAGAAGGTGTACAAGTCGCAGCGTCTGCGCGCCGGTCGCGGTAAGATGCGCAACCGTCGCCGTGTCCAGCGTCGCGGTCCGCTGATCATCTACGATCGGGATGAGGGTCTGCGCCGTGCGTTCCGTAACATTCCCGGCGTCGATACGATGCGGGTGAGCAAGATGAACCTGCTGAAGCTGACCCCGATCATGGCCAACACCGATCTGACCCGTCTGCTGAAGTCGGAGGAAATCCGTCGCGTGCTGCGAGCGCCGAGAAGGAAGGTGTACCGACGCGTGCGCCGTCTGAACCCGCTCACCAACAAGGAGCAGATGCTGAAGCTGAACCCGTACGCCGCGGTCACGAAGCGCCGTGCCCAGCTGATGACGAAGTGCGCAGGTGCGAGCGCCTGGTGGCGAAGGCGGAAGCCAAGAAGAAGCCACTGGATGCCAAGCACCGGGCGGTCGTGTTCGTGGAGAAGCAGACGCGCCGCCTGCAGAAGATGGAGAAGATCAAGGCGGCCCGCAAGGAGAAGGTGGACAAGAAGGTGGCCGATTTTAAGGCGTCCGGCAAGAAGCCGTCGCTGAAGAAGGTGCGCCCCGCCAAGGAAGCCGCGAAACCAGTAAAGAAAGCCGTTAAGAAGGTAGAGAAGAAGTAGAGAGTAAACCAACCAACCAACCACCTCCCCCTCCAAAATGTTCTGTTTAGTTGGTAAGGATTAATGATATAAAAGTAAAAAAAAAATAAATTTAAACGTGCTAAAGC]




>consensus_3231#0
AATTCGTGAAGATTCTGGGAGTAAACTTGTGCTAAAATGAGTTTGACGGCAGCGCGCCCT
TTGGTCAGTGTGTACTCTGACAAAAATGAGGCGGTGAAGGATAAGGGAGTTGCCTTGCCG
GCAATTTTCAAGGCCCCGATCCGTCCGGATGTGGTGAACGAGGTGTCGCAGCTGATGCGC
CGCAACCGTCGCCAGGCGTACGCCGTAGAGCGAGGCCGCCGGTCACCAGACGTCGGCCGA
ATCGTGGGGTACCGGTCACGCTGTGGCCCGTATCCCGCGTGTCCGCGGCGGTGGTACCCA
CCGTTCCGGCCAGGGTGCGTACGGTAACATGTGCCGTGGTGGACGCATGTTCGCCCCGAC
CAAGCCGTGGCGCCGTTGGCACCGCAAGATCAACATCAACCTGAAGCGCTACGCTCTGGT
TTCGGCCCTCGCTGCCAGCGGTGTCCCTGCCCTGGTGCAGTCGCGCGGTCATATCATCGA
CGGTATCTCTGAGCTGCCGCTGGTCGTGTCCGACGACATCCAGAAGTTCCAGAAGACCAA
GCAGGCCGTCACCTTCCTGCGCCGCTCGAAGGTTTGGGCCGACGTGCAGAAGGTGTACAA
GTCGCAGCGTCTGCGCGCCGGTCGCGGTAAGATGCGCAACCGTCGCCGTGTCCAGCGTCG
CGGTCCGCTGATCATCTACGATCGGGATGAGGGTCTGCGCCGTGCGTTCCGTAACATTCC
CGGCGTCGATACGATGCGGGTGAGCAAGATGAACCTGCTGAAGCTGATCCCGATCATGGC
CAACACCGATCTGACCCGTCTGCTGAAGTCGGAGGAAATCCGTCGCGTGCTGCGAGCGCC
GAGAAGGAAGGTGTACCGACGCGTGCGCCGTCTGAACCCGCTCACCAACAAGGAGCAGAT
GCTGAAGCTGAACCCGTACGCCGCGGTCACGAAGCGCCGTGCCCAGCTGATGACGAAGTG
CGCAGGTGCGAGCGCCTGGTGGCGAAGGCGGAAGCCAAGAAGAAGCCACTGGATGCCAAG
CACCGGGCGGTCGTGTTCGTGGAGAAGCAGACGCGCCGCCTGCAGAAGATGGAGAAGATC
AAGGCGGCCCGCAAGGAGAAGGTGGACAAGAAGGTGGCCGATTTTAAGGCGTCCGGCAAG
AAGCCGTCGCTGAAGAAGGTGCGCCCCGCCAAGGAAGCCGCGAAACCAGTAAAGAAAGCC
GTTAAGAAGGTAGAGAAGAAGTAGAGAGTAAACCAACCAACCAACCACCTCCCCCTCCAA
AATGTTCTGTTTAGTTGGTAAGGATTAATGATATAAAAGTAAAAAAAAAATAAATTTAAA
CGTGCTAAAGC

consensusID : consensus_3231#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence

                              [GTCCGAACTTATTGAGGTAAGCCAGATTGATAGCTCTTTCTCAAACTTAAGGGTAGTGGTGCATGGCCGTTCTTAGTTCGTGGAATGATTTGTCTGGTTAATTCCGATAACGAACGCGACTCAGTCAAGCTAACTAGAACGCTGTCAGTAGTGTGCCTCCGGGCGCACCTGACGTTAGGAGTGGCGGGTGTCCTCACGGGTGCCCGTCACTTAGTTTGCCCTGCTTAGCGGGACAACTTGTGTTTAGCAAGATGAGATTGAGCGATAACAGGTCCGTGATGCCCTTAGATGTTCTGGGCTGCACGCGTGCTACAATGTGAGCAGCAGCGTGTTCTCGCCTTATGGCGCCCCCATTCCGAGAGGAACGGGAAATCACCCAAATGCTCATTTACTGACCGACAAGTCGATCACGCCGATGGGTGGTTTCCCGTTCTACGGAGAGATCAACCAGGATTTCCTCATGATCAAGGGTTGCTGCATCGGTGCCAAGCGTCGCGTAATCACGCTGCGCAAATCGCTGCTGG]

[+] EMBL BX607052             [GTCCGAACTTATTGAGGTAAGCCAGATTGATAGCTCTTTCTCAAACTTAAGGGTAGTGGTGCATGGCCGTTCTTAGTTCGTGGAATGATTTGTCTGGTTAATTCCGATAACGAACGCGACTCAGTCAAGCTAACTAGAACGCTGTCAGTAGTGTGCCTCCGGGCGCACCTGACGTTAGGAGTGGCGGGTGTCCTCACGGGTGCCCGTCACTTAGTTTGCCCTGCTTAGCGGGACAACTTGTGTTTAGCAAGATGAGATTGAGCGATAACAGGTCCGTGATGCCCTTAGATGTTCTGGGCTGCACGCGTGCTACAATGTGAGCAGCAGCGTGTTCTCGCCTTATGGCGCCCCCATTCCGAGAGGAACGGGAAATCACCCAAATGCTCATTTACTGACCGACAAGTCGATCACGCCGATGGGTGGTTTCCCGTTCTACGGAGAGATCAACCAGGATTTCCTCATGATCAAGGGTTGCTGCATCGGTGCCAAGCGTCGCGTAATCACGCTGCGCAAATCGCTGCTGG]




>consensus_3231#1
GTCCGAACTTATTGAGGTAAGCCAGATTGATAGCTCTTTCTCAAACTTAAGGGTAGTGGT
GCATGGCCGTTCTTAGTTCGTGGAATGATTTGTCTGGTTAATTCCGATAACGAACGCGAC
TCAGTCAAGCTAACTAGAACGCTGTCAGTAGTGTGCCTCCGGGCGCACCTGACGTTAGGA
GTGGCGGGTGTCCTCACGGGTGCCCGTCACTTAGTTTGCCCTGCTTAGCGGGACAACTTG
TGTTTAGCAAGATGAGATTGAGCGATAACAGGTCCGTGATGCCCTTAGATGTTCTGGGCT
GCACGCGTGCTACAATGTGAGCAGCAGCGTGTTCTCGCCTTATGGCGCCCCCATTCCGAG
AGGAACGGGAAATCACCCAAATGCTCATTTACTGACCGACAAGTCGATCACGCCGATGGG
TGGTTTCCCGTTCTACGGAGAGATCAACCAGGATTTCCTCATGATCAAGGGTTGCTGCAT
CGGTGCCAAGCGTCGCGTAATCACGCTGCGCAAATCGCTGCTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3231#0      AATTCGTGAAGATTCTGGGAGTAAACTTGTGCTAAAATGAGTTTGACGGCAGCGCGCCCT 60
consensus_3231#1      ------------------------------------------------------------
                                                                                  

consensus_3231#0      TTGGTCAGTGTGTACTCTGACAAAAATGAGGCGGTGAAGGATAAGGGAGTTGCCTTGCCG 120
consensus_3231#1      --------------GTCCGAACTTATTGAGGTAAGCCAGATTGATAGCTCTTTCTCAAAC 46
                                     ** **    * *****      **  * *  *   *  **     

consensus_3231#0      GCAATTTTCAAGGCCCCGATCCGTCCGGATGTGGTG-AACGAGGTGTCGCAGCTGATGCG 179
consensus_3231#1      TTAAGGGTAGTGGTGCATGGCCGTTCTTAGTTCGTGGAATGATTTGTC-TGGTTAATTC- 104
                        **   *   **  *    **** *  *  * *** ** **  ****   * * ** * 

consensus_3231#0      CCGCAACCGTCGCCAGGCGTACGCCGTAGAGCGAGGCCGCCGGTCACCAGACGTCGGCCG 239
consensus_3231#1      CGATAACGAACGCGA------CTCAGTCAAGCTAACTAGAACGCTGTCAGTAGTGTGCC- 157
                      *   ***   *** *      * * **  *** *    *   *    ***  **  *** 

consensus_3231#0      AATCGTGGGGTACCGGTCACGCTGTGGCCCGTATCCCGCGTGTCCGCGGCGGTGGTACCC 299
consensus_3231#1      --TCCGGGCGCACCTG--ACGTTAGGAGTGG-----CGGGTGTCCTCACGGGTGCCCGTC 208
                        **  ** * *** *  *** *  *    *     ** ****** *   ****     *

consensus_3231#0      ACCGTTCCGGCCAGGGTGCGTACGGTAACATGTGCCGTGGTGGACGCATGTTCGCCCCGA 359
consensus_3231#1      ACTTAGTTTGCCCTGCTTAGCGGGACAACTTGTGTTTAGCAAGATGAGATTGAGCGATAA 268
                      **       ***  * *  *   *  *** ****    *   ** *    *  **    *

consensus_3231#0      CCAAGCCGTGGCGCCGTTGGCACCGCAAGATCAACATCAACCTGAAGCGCTACGCTCTGG 419
consensus_3231#1      CAGGTCCGTGATGCCCTTAGATGTTCTGGGCTGCACGCGTGCTACAATG-TGAGCAGCAG 327
                      *    *****  *** ** *     *  *        *   **  *  * *  **    *

consensus_3231#0      TTTCGGCCCTCGCTGCCAGCGGTGTCCCTGCCCTGGTGCAGTCGCGCGGTCATATCATCG 479
consensus_3231#1      CGT--GTTCTCGC--CTTATGGCGCCCCCATTCCGAGAGGAACGGGAAATCACCCAAATG 383
                        *  *  *****  *    ** * ***    * *       ** *   ***    *  *

consensus_3231#0      ACGGTATCTCTGAGCTGCC-GCTGGTCGTGTCC---GACGACATCCAGAAGTTCCAGAAG 535
consensus_3231#1      CTCAT-TTACTGACCGACAAGTCGATCACGCCGATGGGTGGTTTCCCGTTCTACGGAGAG 442
                          * *  **** *  *  *  * **  * *    *  *   *** *   * *    **

consensus_3231#0      ACCAAGCAGGCCGTCACCTTCCTGCGCCGCTCGAAGGTTTGGGCCGACGTGCAGAAGGTG 595
consensus_3231#1      ATCAACCAGGATTTCCTCAT--------GATCAAGGGTTGCTGCATCGGTGCCAAGCGT- 493
                      * *** ****   **  * *        * ** * ****   **    ****  *  ** 

consensus_3231#0      TACAAGTCGCAGCGTCTGCGCGCCGGTCGCGGTAAGATGCGCAACCGTCGCCGTGTCCAG 655
consensus_3231#1      --CGCGTAATCACGCT---GCGCAAATCGCTGCTGG------------------------ 524
                        *  **     **     ****   **** *   *                        

consensus_3231#0      CGTCGCGGTCCGCTGATCATCTACGATCGGGATGAGGGTCTGCGCCGTGCGTTCCGTAAC 715
consensus_3231#1      ------------------------------------------------------------
                                                                                  

consensus_3231#0      ATTCCCGGCGTCGATACGATGCGGGTGAGCAAGATGAACCTGCTGAAGCTGATCCCGATC 775
consensus_3231#1      ------------------------------------------------------------
                                                                                  

consensus_3231#0      ATGGCCAACACCGATCTGACCCGTCTGCTGAAGTCGGAGGAAATCCGTCGCGTGCTGCGA 835
consensus_3231#1      ------------------------------------------------------------
                                                                                  

consensus_3231#0      GCGCCGAGAAGGAAGGTGTACCGACGCGTGCGCCGTCTGAACCCGCTCACCAACAAGGAG 895
consensus_3231#1      ------------------------------------------------------------
                                                                                  

consensus_3231#0      CAGATGCTGAAGCTGAACCCGTACGCCGCGGTCACGAAGCGCCGTGCCCAGCTGATGACG 955
consensus_3231#1      ------------------------------------------------------------
                                                                                  

consensus_3231#0      AAGTGCGCAGGTGCGAGCGCCTGGTGGCGAAGGCGGAAGCCAAGAAGAAGCCACTGGATG 1015
consensus_3231#1      ------------------------------------------------------------
                                                                                  

consensus_3231#0      CCAAGCACCGGGCGGTCGTGTTCGTGGAGAAGCAGACGCGCCGCCTGCAGAAGATGGAGA 1075
consensus_3231#1      ------------------------------------------------------------
                                                                                  

consensus_3231#0      AGATCAAGGCGGCCCGCAAGGAGAAGGTGGACAAGAAGGTGGCCGATTTTAAGGCGTCCG 1135
consensus_3231#1      ------------------------------------------------------------
                                                                                  

consensus_3231#0      GCAAGAAGCCGTCGCTGAAGAAGGTGCGCCCCGCCAAGGAAGCCGCGAAACCAGTAAAGA 1195
consensus_3231#1      ------------------------------------------------------------
                                                                                  

consensus_3231#0      AAGCCGTTAAGAAGGTAGAGAAGAAGTAGAGAGTAAACCAACCAACCAACCACCTCCCCC 1255
consensus_3231#1      ------------------------------------------------------------
                                                                                  

consensus_3231#0      TCCAAAATGTTCTGTTTAGTTGGTAAGGATTAATGATATAAAAGTAAAAAAAAAATAAAT 1315
consensus_3231#1      ------------------------------------------------------------
                                                                                  

consensus_3231#0      TTAAACGTGCTAAAGC 1331
consensus_3231#1      ----------------