These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1243 fasta sequence [CCGCAGGTTAAGAGTAAACATACCAAAACAATATGTTTTTATCATTGGTGCTACACACANAACTAAACACAATCTTCAACAAGTTTATCTATTGTTGACAAAGTTTGGNGCCGAGCAAAGCAAAACAAAAAATCTTTCCTTGATAGATCGGAAAGACAGTCTAATAGATATACCTCCTGGCCTGATGACAGTACCATACCTGGTGCTGGTTTCATAACTTGCTTTGTTATACAAGAGTAANTCTGACGCACTTGCCACCTAGGCTAACAATCCAGAAAAGTGTACTGAGGTTTAACANAAAACTCAGNTTAAATACANCACAGCAANCTTAAGCGCCCTCAAATTACTTTCACTACNAAGCACTACCGCAGCTAATTAACNACTTGAAGTTTGGGTANTAANTACACTGGGACTTACCGCACAACACTAAACGGGGCCGAGGTACCCGCCTCACAATTCATTACTTAAATAAACTNACACAGAACCGGTGTNATTAGTGCCCAAGAGGAAACANCTCNCACAANGTGGATNGGCACACAACAATTCCAGGACAAAAGGNCCCAAACACAGATTTATGGGNCAGGCANNCAAGACAGCCCCCGCCATACNGGAGAAACGTNCCACAAGCAACGGTANTGACCACACCTCCAAAGCGGGCGAAAACNAAGGAANCACCAAGTTAGGGGCTGACGGCACAANGGCGGGCANACNAGCATATATACCCCAGGGGGAACGCGGGACATGTNGGTTGGCGCACCATTCAGAAAAATGGGCATNACCGGNACACAACANCTAACCTTACCCCGAGTACGGCGCGAACAACGGGTAACCAAGCAACGGTTGTATAAACACNAGGGGCTNCCACTAGAGAGACGAACACGNCGGNNGAAAACAAGAGACCAACACANACCCCGGGGGCGCANCGGGAACTCACANCNGGGGACNCAACCCCGCCCAACNACCCGGGCCACCTCTCCAAGCGTAATTAANATNNGCACACGGGCGACACNNGCCGGGGCCANTACACACCANCAACTGGGAACACNGGCACGGGAAGNNCATAACATANGNCGTNACCCNTAAACNCANAACCCATNGGGGGCCTACACNCGGCCCCACGCCCAGACCCAGCCNCANGGCCGCCAGCCCACCATCAGGNTGCCNCACACAACACCAGCGCCNCNAAGCAACCTCAGNAAACNCNGGCNACANCCCACACCGCGGTAGGCGCAANAACGGNACC] [+] EMBL AL694929 [CCGCAGGTTAAGAGTAAACATACCAAAACAATATGTTTTTATCATTGGTGCTACACACANAACTAAACACAATCTTCAACAAGTTTATCTATTGTTGACAAAGTTTGGNGCCGAGCAAAGCAAAACAAAAAATCTTTCCTTGATAGATCGGAAAGACAGTCTAATAGATATACCTCCTGGCCTGATGACAGTACCATACCTGGTGCTGGTTTCATAACTTGCTTTGTTATACAAGAGTAANTCTGACGCACTTGCCACCTAGGCTAACAATCCAGAAAAGTGTACTGAGGTTTAACANAAAACTCAGNTTAAATACANCACAGCAANCTTAAGCGCCCTCAAATTACTTTCACTACNAAGCACTACCGCAGCTAATTAACNACTTGAAGTTTGGGTANTAANTACACTGGGACTTACCGCACAACACTAAACGGGGCCGAGGTACCCGCCTCACAATTCATTACTTAAATAAACTNACACAGAACCGGTGTNATTAGTGCCCAAGAGGAAACANCTCNCACAANGTGGATNGGCACACAACAATTCCAGGACAAAAGGNCCCAAACACAGATTTATGGGNCAGGCANNCAAGACAGCCCCCGCCATACNGGAGAAACGTNCCACAAGCAACGGTANTGACCACACCTCCAAAGCGGGCGAAAACNAAGGAANCACCAAGTTAGGGGCTGACGGCACAANGGCGGGCANACNAGCATATATACCCCAGGGGGAACGCGGGACATGTNGGTTGGCGCACCATTCAGAAAAATGGGCATNACCGGNACACAACANCTAACCTTACCCCGAGTACGGCGCGAACAACGGGTAACCAAGCAACGGTTGTATAAACACNAGGGGCTNCCACTAGAGAGACGAACACGNCGGNNGAAAACAAGAGACCAACACANACCCCGGGGGCGCANCGGGAACTCACANCNGGGGACNCAACCCCGCCCAACNACCCGGGCCACCTCTCCAAGCGTAATTAANATNNGCACACGGGCGACACNNGCCGGGGCCANTACACACCANCAACTGGGAACACNGGCACGGGAAGNNCATAACATANGNCGTNACCCNTAAACNCANAACCCATNGGGGGCCTACACNCGGCCCCACGCCCAGACCCAGCCNCANGGCCGCCAGCCCACCATCAGGNTGCCNCACACAACACCAGCGCCNCNAAGCAACCTCAGNAAACNCNGGCNACANCCCACACCGCGGTAGGCGCAANAACGGNACC] consensusID : consensus_3232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [GCAAGATCGNCACGAGGTCGCAAATCATCTTCCTGGTGCTGCTGTTCGCCTACATGGTGTTCATGATGTTCATGAAGTGGATCGCGTATACAGCCAAAACCGACTACCAGCCCCGCACGCCCGGCTGCGCCCCGTTCCGTGCTGATTATGTTCATCAACATGATGCTGTTTAAAAACTCCGAACCCTTCCACGGCTGCGACGAGTTCATGTTCGAGGGCCAGAACGAGCTGCAGCGCACGTTCGTGTTCATTGCGCTGCTCTGCATTCCCTGGATGCTGCTCGGCAAGCCGTTCTATTTAATGTTCAAGCGCAAGAACGCTTCGCCGACACCGCATCCCGAACAATGGCGACGTTTCACCAGGGACGGTGACTCGAAACCACACTTCCTCCAGCCCGAAACCGCACGATTTCGCACGACGATGAGCCGATGGCGGAAATCTTCGAGTCCANTCAGGCCATTCACACGATCGAGTACGTGCTCAGGTACCGTGGTCGGACACTGGGGTTGCGTACCGTGGCGTACATGTGGGCTACTGTCCCTTGGGNCCGATGCCCGAAGCTGTCCGAGGGTGCCTNGTGGAACATGGGTGGCTAGN] [+] EMBL BX468730 [GCAAGATCGNCACGAGGTCGCAAATCATCTTCCTGGTGCTGCTGTTCGCCTACATGGTGTTCATGATGTTCATGAAGTGGATCGCGTATACAGCCAAAACCGACTACCAGCCCCGCACGCCCGGCTGCGCCCCGTTCCGTGCTGATTATGTTCATCAACATGATGCTGTTTAAAAACTCCGAACCCTTCCACGGCTGCGACGAGTTCATGTTCGAGGGCCAGAACGAGCTGCAGCGCACGTTCGTGTTCATTGCGCTGCTCTGCATTCCCTGGATGCTGCTCGGCAAGCCGTTCTATTTAATGTTCAAGCGCAAGAACGCTTCGCCGACACCGCATCCCGAACAATGGCGACGTTTCACCAGGGACGGTGACTCGAAACCACACTTCCTCCAGCCCGAAACCGCACGATTTCGCACGACGATGAGCCGATGGCGGAAATCTTCGAGTCCANTCAGGCCATTCACACGATCGAGTACGTGCTCAGGTACCGTGGTCGGACACTGGGGTTGCGTACCGTGGCGTACATGTGGGCTACTGTCCCTTGGGNCCGATGCCCGAAGCTGTCCGAGGGTGCCTNGTGGAACATGGGTGGCTAGN] consensusID : consensus_3232#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [TCTAGGCGTCANAACAAACGAAAAAAAGCCATCANAGTGCATATGGCAAGTGTGACACAGTGGCAGGCCGTTTGCTCGAGGAAGAATAAAAGACATTGTTTTGTCGTGCCTTNNAAGCTAATCTTGGAAGCGTAACGTTTCATCGACATTATAAGACAATCTCGAAAGTTGAGCTCCAGAGTCAGGTGCGNATGAGCGAATCGGATCTGATCGNTGCAGA] [+] EMBL BX619611 [TCTAGGCGTCANAACAAACGAAAAAAAGCCATCANAGTGCATATGGCAAGTGTGACACAGTGGCAGGCCGTTTGCTCGAGGAAGAATAAAAGACATTGTTTTGTCGTGCCTTNNAAGCTAATCTTGGAAGCGTAACGTTTCATCGACATTATAAGACAATCTCGAAAGTTGAGCTCCAGAGTCAGGTGCGNATGAGCGAATCGGATCTGATCGNTGCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3232#0 CCGCAGGTTAAGAGTAAACATACCAAAACAATATGTTTTTATCATTGGTGCTACACACAN 60 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 ------------------------------------------------------------ consensus_3232#0 AACTAAACACAATCTTCAACAAGTTTATCTATTGTTGACAAAGTTTGGNGCCGAGCAAAG 120 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 ------------------------------------------------------------ consensus_3232#0 CAAAACAAAAAATCTTTCCTTGATAGATCGGAAAGACAGTCTAATAGATATACCTCCTGG 180 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 ------------------------------------------------------------ consensus_3232#0 CCTGATGACAGTACCATACCTGGTGCTGGTTTCATAACTTGCTTTGTTATACAAGAGTAA 240 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 ------------------------------------------------------------ consensus_3232#0 NTCTGACGCACTTGCCACCTAGGCTAACAATCCAGAAAAGTGTACTGAGGTTTAACANAA 300 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 ------------------------------------------------------------ consensus_3232#0 AACTCAGNTTAAATACANCACAGCAANCTTAAGCGCCCTCAAATTACTTTCACTACNAAG 360 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 ------------------------------------------------------------ consensus_3232#0 CACTACCGCAGCTAATTAACNACTTGAAGTTTGGGTANTAANTACACTGGGACTTACCGC 420 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 ------------------------------------------------------------ consensus_3232#0 ACAACACTAAACGGGGCCGAGGTACCCGCCTCACAATTCATTACTTAAATAAACTNACAC 480 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 ------------------------------------------------GCAAGATCGNCA 12 consensus_3232#0 AGAACCGGTGTNATTAGTGCCCAAGAGGAAACANCTCNCACAANGTGGATNGGCACACAA 540 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 CGAGGTCGCAAATCATCTTCCTGGTGCTGCTGTTCGCCTACATGGTGTTCATGATGTTCA 72 consensus_3232#0 CAATTCCAGGACAAAAGGNCCCAAACACAGATTTATGGGNCAGGCANNCAAGACAGCCCC 600 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 TGAAGTGGATCGCGTATACAGCCAAAACCGACT-ACCAGCCCCGCACGCCCGGCTGCGCC 131 consensus_3232#0 CGCCATACNGGAGAAACGTNCCACAAGCAACGGTANTGACCACACCTCCAAAGCGGGCGA 660 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 CCGTTCCGTGCTGATTATGTTCATCAACATGATGCTGTTTAAAAACTCCGAACCCTTCCA 191 consensus_3232#0 AAACNAAGGAANCACCAAGTTAGGGGCTGACGGCACAANGGCGGGCANACNAGCATATAT 720 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 CGGCTGCGACGAGTTCATGTTCGAGGGCCAGAACGAGCTGCAGCGCACGTTCGTGTTCAT 251 consensus_3232#0 -ACCCCAGGGGGAACGCGGGACATGTNGGTTGGCGCACCATTCAGAAAAATGGGCATNAC 779 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 TGCGCTGCTCTGCATTCCCTGGATGCTGCTCGGCAAGCCGTTCTATTTAATGTTCAAGCG 311 consensus_3232#0 CGGNACACAACANCTAACCTTACCCCGAGTACGGCGCGAACAACGGGTAACCAAGCAACG 839 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 CAAGAACGCTTCGCCGACACCGCATCCCGAACAATG---GCGACGTTTCACCAGGGACGG 368 consensus_3232#0 GTTGTATAAACACNAGGGGCTNCCACTAGAGAGACGAACACGNCGGNNGAAAACAAGAGA 899 consensus_3232#2 -----------TCTAGGCGTCANAACAAACGAAAAAAAGCCATCANAGTGCATATGGCAA 49 consensus_3232#1 TGACTCGAAACCACACTTCCTCCAGCCCGAAACCGCACGATTTCGCACGACGATGAGCCG 428 * * * * * * consensus_3232#0 CCAACACANACCCCGGGG-GCGCANCGGGAACTCACANCNGGGGACNCAACCCCGCCCAA 958 consensus_3232#2 GTGTGACACAGTGGCAGG-CCGTTTGCTCGAGGAAGAATAAAAGACATTGTTTTGTCGTG 108 consensus_3232#1 ATGGCGGAAATCTTCGAGTCCANTCAGGCCATTCACACGATCGAGTAC-GTGCTCAGGTA 487 * * * * * * * consensus_3232#0 CNACCCGGGCCACCTCTCCAAGCGTAAT-TAANATNNGCACACGGGCGACACNNGCC-GG 1016 consensus_3232#2 CCTTNNAAGCTAATCTTGGAAGCGTAACGTTTCATCGACAT-TATAAGACAATCTCG-AA 166 consensus_3232#1 CCGTGGTCGGACACTGGGGTTGCGTACCGTGGCGT--ACATGTGGGCTACTGTCCCTTGG 545 * * ***** * * ** ** * consensus_3232#0 GGCCANTACACACCANCAACTGGGAACACNGGCACGGGAAGNNCATAACATANGNCGTNA 1076 consensus_3232#2 AGTTGAGCTCCAGAGTCAGGTGCGNATGAGCGAATCGGATCTGATCGNTGCAGA------ 220 consensus_3232#1 GNCCGATGCCCGAAGCTGTCCGAGGGTGCCTN-GTGGAACATGGGTGGC-TAGN------ 597 * * * * * * consensus_3232#0 CCCNTAAACNCANAACCCATNGGGGGCCTACACNCGGCCCCACGCCCAGACCCAGCCNCA 1136 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 ------------------------------------------------------------ consensus_3232#0 NGGCCGCCAGCCCACCATCAGGNTGCCNCACACAACACCAGCGCCNCNAAGCAACCTCAG 1196 consensus_3232#2 ------------------------------------------------------------ consensus_3232#1 ------------------------------------------------------------ consensus_3232#0 NAAACNCNGGCNACANCCCACACCGCGGTAGGCGCAANAACGGNACC 1243 consensus_3232#2 ----------------------------------------------- consensus_3232#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||