These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1233 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGTGATGAGCTGCGCGCCGAGCAGGACCATGCCCAGACCCAGGAGAAGCTGCGCAAGGCGCTTGAGCAGCAGATCAAGGAGCTGCAGGTCCGCCTGGATGAGGCCGAATCGAACGCCCTGAAGGGAGGCAAGAAGGCTATCCAGAAGCTGGAGCAGCGCGTCCGCGAGCTCGAGTCGGAGCTGGACAGCGAACAGAGACGACATGCCGATGCCCAGAAGAACCTGCGCAAGTCGGAGCGTCGCATCAAGGAGCTGACCTTCCAGTCGGAGGAAGACCGCAAGAACCACGAGCGCATGCAGGATCTGGTTGACAAGCTGCAGCAGAAGATCAAGACTTACAAGAGGCAGATTGAGGAAGCCGAGGAGATCGCCGCCCTCAACTTGGCCAAGTTCCGTAAGGCCCAGCAGGAGCTGGAGGAAGCCGAGGAGCGTGCCGACATTGCCGAACAAGCTGCCACCAAATTCCGCACCAAGGGAGGACGTGCCGGTTCCGTACAGCGTGGTGCTAGCCCAGCACCGTCGGTGGTCAGAGCGTAAAGCGTGTCCGCTGACTCCCAAGCAGTTGTGTTTGATTGAGAGTATGTGTATGCGAACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTC-TCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCTTCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTTCTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATCAGGCCAACCACGGCACAGCGCACAAATTCGCCCTTCCCGTCAGTGACCCGCCGCCGGAAGTCGTTCGAAGCCGTTAACTATCGAATACAAAACATGAAAAAAGAGACACGTAACAACATCAACATAAAATGTACCGCGCCGGTACACAGGGAGCTAAGGAATGGGGCACGAAACATCACCAGCAGCAACATCGGTGCCGCGTTCGGTAAGCCAGAAAAGTAGGTAGCGGATGGAGAACGGAAAGTACTTTCGGACCACCTGTCATCCACCCGCGTCCGGACAGAGGAAGGAAAAGGGAAAAGAATCAAATCTTACAGCAGCGTCGCAAATGGAA] [+] EMBL BM630918 [CCGCCCACGCGTCCGCCCACGCGTCCGTGATGAGCTGCGCGCCGAGCAGGACCATGCCCAGACCCAGGAGAAGCTGCGCAAGGCGCTTGAGCAGCAGATCAAGGAGCTGCAGGTCCGCCTGGATGAGGCCGAATCGAACGCCCTGAAGGGAGGCAAGAAGGCTATCCAGAAGCTGGAGCAGCGCGTCCGCGAGCTCGAGTCGGAGCTGGACAGCGAACAGAGACGACATGCCGATGCCCAGAAGAACCTGCGCAAGTCGGAGCGTCGCATCAAGGAGCTGACCTTCCAGTCGGAGGAAGACCGCAAGAACCACGAGCGCATGCAGGATCTGGTTGACAAGCTGCAGCAGAAGATCAAGACTTACAAGAGGCAGATTGAGGAAGCCGAGGAGATCGCCGCCCTCAACTTGGCCAAGTTCCGTAAGGCCCAGCAGGAGCTGGAGGAAGCCGAGGAGCGTGCCGACATTGCCGAACAAGCTGCCACCAAATTCCGCACCAAGGGAGGACGTGCCGGTTCCGTACAGCGTGGTGCTAGCCCAGCACCGTCGGTGGTCAGAGCGTAAAGCGTGTCCGCTGACTCCCAAGCAGTTGTGTTTGATTGAGAGTATGTGTATGCGAACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTC TCTACTGATACGATTGCGATTATT ] [-] EMBL BM631339 [ CCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTCTTCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCTTCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTTCTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATCAGGCCAACCACGGCACAGCGCACAAATTCGCCCTTCCCGTCAGTGACCCGCCGCCGGAAGTCGTTCGAAGCCGTTAACTATCGAATACAAAACATGAAAAAAGAGACACGTAACAACATCAACATAAAATGTACCGCGCCGGTACACAGGGAGCTAAGGAATGGGGCACGAAACATCACCAGCAGCAACATCGGTGCCGCGTTCGGTAAGCCAGAAAAGTAGGTAGCGGATGGAGAACGGAAAGTACTTTCGGACCACCTGTCATCCACCCGCGTCCGGACAGAGGAAGGAAAAGGGAAAAGAATCAAATCTTACAGCAGCGTCGCAAATGGAA] consensusID : consensus_3239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [GCAAGAATCCGCACGATGTNTTTATTCTTTTTTTTTTATTTTTTTACTTATTCACAGATGTGCGAATGACTTATATAATTTTTCGTCTTGCTCATTCCCTCTGCTACGTCCATTTGCTAACAGTTGTTTNTCTAATGTCCAAACTTCGATCGTCCGTCATCGAAAGGGTTTAGAGGTCGGGAGGGTCCTTTATAGCTATGTGTATGTGTGTAGTGAGTGTTGGGAGAAGTGCAGCAGGATGTGCGAGTTAGGTTGATTTGACTTTCGAGATCATTTTCCTCCAGCCGTCTGCTTCAGCTTTATCCCGTGGTGTCGCTAATTGCAAGCTGTCCGCAACGTTTTTGCGTATTATTCTTTGAAGTATGGCTTGAATAACCTTGGTGGTACATTGAATTCGGTGGGAAACCATTTGTTTTTTCCATCGGGGTACCATAGCACCATATGTGGAATCAAGGCACTTTCAGGCAACCCAGGTAGAACGGGGATGATCTGAACCCAGGAAGGAAGGAGAAGTGGCTCGAACACCGACAAGCGACGCCNAAACGTTTACCCAGTACGTTAACCATTTAGTGTCATCCTCGATATTACGTGGCGGGTTATCGATAGCTATTCATCGAGGATGTAAAGCGGGAATACGGCCACATCCGAAGTCACGTTGCAGAGGAATCTGAGCNCCAGTAGCC] [+] EMBL BX468759 [GCAAGAATCCGCACGATGTNTTTATTCTTTTTTTTTTATTTTTTTACTTATTCACAGATGTGCGAATGACTTATATAATTTTTCGTCTTGCTCATTCCCTCTGCTACGTCCATTTGCTAACAGTTGTTTNTCTAATGTCCAAACTTCGATCGTCCGTCATCGAAAGGGTTTAGAGGTCGGGAGGGTCCTTTATAGCTATGTGTATGTGTGTAGTGAGTGTTGGGAGAAGTGCAGCAGGATGTGCGAGTTAGGTTGATTTGACTTTCGAGATCATTTTCCTCCAGCCGTCTGCTTCAGCTTTATCCCGTGGTGTCGCTAATTGCAAGCTGTCCGCAACGTTTTTGCGTATTATTCTTTGAAGTATGGCTTGAATAACCTTGGTGGTACATTGAATTCGGTGGGAAACCATTTGTTTTTTCCATCGGGGTACCATAGCACCATATGTGGAATCAAGGCACTTTCAGGCAACCCAGGTAGAACGGGGATGATCTGAACCCAGGAAGGAAGGAGAAGTGGCTCGAACACCGACAAGCGACGCCNAAACGTTTACCCAGTACGTTAACCATTTAGTGTCATCCTCGATATTACGTGGCGGGTTATCGATAGCTATTCATCGAGGATGTAAAGCGGGAATACGGCCACATCCGAAGTCACGTTGCAGAGGAATCTGAGCNCCAGTAGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3239#0 CCGCCCACGCGTCCGCCCACGCGTCCGTGATGAGCTGCGCGCCGAGCAGGACCATGCCCA 60 consensus_3239#1 ------------------------------------------------------------ consensus_3239#0 GACCCAGGAGAAGCTGCGCAAGGCGCTTGAGCAGCAGATCAAGGAGCTGCAGGTCCGCCT 120 consensus_3239#1 ------------------------------------------------------------ consensus_3239#0 GGATGAGGCCGAATCGAACGCCCTGAAGGGAGGCAAGAAGGCTATCCAGAAGCTGGAGCA 180 consensus_3239#1 ------------------------------------------------------------ consensus_3239#0 GCGCGTCCGCGAGCTCGAGTCGGAGCTGGACAGCGAACAGAGACGACATGCCGATGCCCA 240 consensus_3239#1 ------------------------------------------------------------ consensus_3239#0 GAAGAACCTGCGCAAGTCGGAGCGTCGCATCAAGGAGCTGACCTTCCAGTCGGAGGAAGA 300 consensus_3239#1 ------------------------------------------------------------ consensus_3239#0 CCGCAAGAACCACGAGCGCATGCAGGATCTGGTTGACAAGCTGCAGCAGAAGATCAAGAC 360 consensus_3239#1 ------------------------------------------------------------ consensus_3239#0 TTACAAGAGGCAGATTGAGGAAGCCGAGGAGATCGCCGCCCTCAACTTGGCCAAGTTCCG 420 consensus_3239#1 ----------------GCAAGAATCCGCACGATGTNTTTATTCTTTTTTTTTTATTTTTT 44 * * * *** ** ** * ** consensus_3239#0 TAAGGCCCAGCAGGAGCTGGAGGAAGCCGAGGAGCGTGCCGACATTGCCGAACAAGCTGC 480 consensus_3239#1 TACTTATTCACAGATGTGCGAATGACTTATATAATTTTTCGTCTTGCTCATTCCCTCTGC 104 ** *** * ** * * * ** * * * * **** consensus_3239#0 CACCAAATTCCGCACCAAGGGAGGACGTGCCGGTTCCGTACAGCGTGGTGCTAGCCCAGC 540 consensus_3239#1 TAC--GTCCATTTGCTAACAGTTGTTTNTCTAAT---GTCCAA-ACTTCGATCGTCCGTC 158 ** * ** * * * * ** ** * * * ** * consensus_3239#0 ACCGTCGGTGGTCAGAGCGTAAAGCGTGTCCGCTGACTCCCAAGCAGTTGTGTTTGATTG 600 consensus_3239#1 ATCGAAAGGGTTTAGAG-GTCGGGAGGGTCC-TTTATAGCTATGTGTATGTGTGT-AGTG 215 * ** * * * **** ** * * **** * * * * * ***** * * ** consensus_3239#0 AGAGTATGTGTATGCG-AACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGC 659 consensus_3239#1 AGTGTTGGGAGAAGTGCAGCAGGATGTGCGAGTTAGG----TTGATTTGACTTTCGAGAT 271 ** ** * * * * * * * * * *** * * * ** * *** consensus_3239#0 CTTCCTAGCAACCCCCCTCTCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCT 719 consensus_3239#1 CATTTT------CCTCCAGCCGTCTGCTTCAGCTTTATCCCGTGGTGTCGCTAATTGCAA 325 * * * ** ** * *** * * * * * ** * * consensus_3239#0 TCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTT 779 consensus_3239#1 GCTGTCCGCAACGTTTTTGCGTATTATTCTT-----TGAAGTATGGCTTGAATAACCTTG 380 ** * * ** * *** ******** * *** ** * * consensus_3239#0 CTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACT 839 consensus_3239#1 GTG-GTACATTGAATTCGGTGGGA-AACCATTTGTTTTT-------TCCATCGGGGTACC 431 ** * * ** * ** * ** * *** * * **** * ** consensus_3239#0 AGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATC 899 consensus_3239#1 ATAGCACCATATGTGGAATCAAGGCACTTTCAGGCAACCCAGGTAGAACGGGGAT-GATC 490 * * * * * ** * * ** * ** * *** ** * **** consensus_3239#0 AGGCCAACCACGGCACAGCGCACAAATTCGCCCTTCCCGTCAGTGACCCGCCGCCGGAAG 959 consensus_3239#1 TG---AACCCAGGAAGGAAGGAGAAGT--GGCTCGAACACCGACAAGCGACGCCNAAACG 545 * **** ** * * * ** * * * * * * * * * * * consensus_3239#0 TCGTTCGAAGCCGTTAACTATCGAATACAAAACATGAAAAAAGAGACACGTAACAACATC 1019 consensus_3239#1 TTTACCCAGTACGTTAACCATTTAGTGTCATCCTCGATAT------TACGTGGCGG-GTT 598 * * * ******* ** * * * * ** * **** * * consensus_3239#0 AACATAAAATGTACCGCGCCGGTACACAGGGAGCTAAGGAATGGGGCACGAAACATCACC 1079 consensus_3239#1 ATCGATAGCTATTCATCGAGGATGTAAAGCGGGAATACGGCCACATC-CGAAGTCACGTT 657 * * * * * * ** * * * ** * * * * * **** * consensus_3239#0 AGCAGCAACATCGGTGCCGCGTTCGGTAAGCCAGAAAAGTAGGTAGCGGATGGAGAACGG 1139 consensus_3239#1 -GCAGAGGAATCTGAGCNCCAGTAGCC--------------------------------- 683 **** *** * ** * * * consensus_3239#0 AAAGTACTTTCGGACCACCTGTCATCCACCCGCGTCCGGACAGAGGAAGGAAAAGGGAAA 1199 consensus_3239#1 ------------------------------------------------------------ consensus_3239#0 AGAATCAAATCTTACAGCAGCGTCGCAAATGGAA 1233 consensus_3239#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||