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Anopheles gambiae
cluster # 3239 cluster # 3239       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3239#0 length = 1233 sequences # 2  
consensus_3239#1 length = 683 sequences # 1  

consensusID : consensus_3239#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1233
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGTGATGAGCTGCGCGCCGAGCAGGACCATGCCCAGACCCAGGAGAAGCTGCGCAAGGCGCTTGAGCAGCAGATCAAGGAGCTGCAGGTCCGCCTGGATGAGGCCGAATCGAACGCCCTGAAGGGAGGCAAGAAGGCTATCCAGAAGCTGGAGCAGCGCGTCCGCGAGCTCGAGTCGGAGCTGGACAGCGAACAGAGACGACATGCCGATGCCCAGAAGAACCTGCGCAAGTCGGAGCGTCGCATCAAGGAGCTGACCTTCCAGTCGGAGGAAGACCGCAAGAACCACGAGCGCATGCAGGATCTGGTTGACAAGCTGCAGCAGAAGATCAAGACTTACAAGAGGCAGATTGAGGAAGCCGAGGAGATCGCCGCCCTCAACTTGGCCAAGTTCCGTAAGGCCCAGCAGGAGCTGGAGGAAGCCGAGGAGCGTGCCGACATTGCCGAACAAGCTGCCACCAAATTCCGCACCAAGGGAGGACGTGCCGGTTCCGTACAGCGTGGTGCTAGCCCAGCACCGTCGGTGGTCAGAGCGTAAAGCGTGTCCGCTGACTCCCAAGCAGTTGTGTTTGATTGAGAGTATGTGTATGCGAACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTC-TCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCTTCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTTCTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATCAGGCCAACCACGGCACAGCGCACAAATTCGCCCTTCCCGTCAGTGACCCGCCGCCGGAAGTCGTTCGAAGCCGTTAACTATCGAATACAAAACATGAAAAAAGAGACACGTAACAACATCAACATAAAATGTACCGCGCCGGTACACAGGGAGCTAAGGAATGGGGCACGAAACATCACCAGCAGCAACATCGGTGCCGCGTTCGGTAAGCCAGAAAAGTAGGTAGCGGATGGAGAACGGAAAGTACTTTCGGACCACCTGTCATCCACCCGCGTCCGGACAGAGGAAGGAAAAGGGAAAAGAATCAAATCTTACAGCAGCGTCGCAAATGGAA]

[+] EMBL BM630918             [CCGCCCACGCGTCCGCCCACGCGTCCGTGATGAGCTGCGCGCCGAGCAGGACCATGCCCAGACCCAGGAGAAGCTGCGCAAGGCGCTTGAGCAGCAGATCAAGGAGCTGCAGGTCCGCCTGGATGAGGCCGAATCGAACGCCCTGAAGGGAGGCAAGAAGGCTATCCAGAAGCTGGAGCAGCGCGTCCGCGAGCTCGAGTCGGAGCTGGACAGCGAACAGAGACGACATGCCGATGCCCAGAAGAACCTGCGCAAGTCGGAGCGTCGCATCAAGGAGCTGACCTTCCAGTCGGAGGAAGACCGCAAGAACCACGAGCGCATGCAGGATCTGGTTGACAAGCTGCAGCAGAAGATCAAGACTTACAAGAGGCAGATTGAGGAAGCCGAGGAGATCGCCGCCCTCAACTTGGCCAAGTTCCGTAAGGCCCAGCAGGAGCTGGAGGAAGCCGAGGAGCGTGCCGACATTGCCGAACAAGCTGCCACCAAATTCCGCACCAAGGGAGGACGTGCCGGTTCCGTACAGCGTGGTGCTAGCCCAGCACCGTCGGTGGTCAGAGCGTAAAGCGTGTCCGCTGACTCCCAAGCAGTTGTGTTTGATTGAGAGTATGTGTATGCGAACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTC TCTACTGATACGATTGCGATTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL BM631339             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTCTTCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCTTCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTTCTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATCAGGCCAACCACGGCACAGCGCACAAATTCGCCCTTCCCGTCAGTGACCCGCCGCCGGAAGTCGTTCGAAGCCGTTAACTATCGAATACAAAACATGAAAAAAGAGACACGTAACAACATCAACATAAAATGTACCGCGCCGGTACACAGGGAGCTAAGGAATGGGGCACGAAACATCACCAGCAGCAACATCGGTGCCGCGTTCGGTAAGCCAGAAAAGTAGGTAGCGGATGGAGAACGGAAAGTACTTTCGGACCACCTGTCATCCACCCGCGTCCGGACAGAGGAAGGAAAAGGGAAAAGAATCAAATCTTACAGCAGCGTCGCAAATGGAA]


>consensus_3239#0 CCGCCCACGCGTCCGCCCACGCGTCCGTGATGAGCTGCGCGCCGAGCAGGACCATGCCCA GACCCAGGAGAAGCTGCGCAAGGCGCTTGAGCAGCAGATCAAGGAGCTGCAGGTCCGCCT GGATGAGGCCGAATCGAACGCCCTGAAGGGAGGCAAGAAGGCTATCCAGAAGCTGGAGCA GCGCGTCCGCGAGCTCGAGTCGGAGCTGGACAGCGAACAGAGACGACATGCCGATGCCCA GAAGAACCTGCGCAAGTCGGAGCGTCGCATCAAGGAGCTGACCTTCCAGTCGGAGGAAGA CCGCAAGAACCACGAGCGCATGCAGGATCTGGTTGACAAGCTGCAGCAGAAGATCAAGAC TTACAAGAGGCAGATTGAGGAAGCCGAGGAGATCGCCGCCCTCAACTTGGCCAAGTTCCG TAAGGCCCAGCAGGAGCTGGAGGAAGCCGAGGAGCGTGCCGACATTGCCGAACAAGCTGC CACCAAATTCCGCACCAAGGGAGGACGTGCCGGTTCCGTACAGCGTGGTGCTAGCCCAGC ACCGTCGGTGGTCAGAGCGTAAAGCGTGTCCGCTGACTCCCAAGCAGTTGTGTTTGATTG AGAGTATGTGTATGCGAACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCC TTCCTAGCAACCCCCCTCTCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCTT CTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTTC TGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACTA GAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATCA GGCCAACCACGGCACAGCGCACAAATTCGCCCTTCCCGTCAGTGACCCGCCGCCGGAAGT CGTTCGAAGCCGTTAACTATCGAATACAAAACATGAAAAAAGAGACACGTAACAACATCA ACATAAAATGTACCGCGCCGGTACACAGGGAGCTAAGGAATGGGGCACGAAACATCACCA GCAGCAACATCGGTGCCGCGTTCGGTAAGCCAGAAAAGTAGGTAGCGGATGGAGAACGGA AAGTACTTTCGGACCACCTGTCATCCACCCGCGTCCGGACAGAGGAAGGAAAAGGGAAAA GAATCAAATCTTACAGCAGCGTCGCAAATGGAA



consensusID : consensus_3239#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence
                              [GCAAGAATCCGCACGATGTNTTTATTCTTTTTTTTTTATTTTTTTACTTATTCACAGATGTGCGAATGACTTATATAATTTTTCGTCTTGCTCATTCCCTCTGCTACGTCCATTTGCTAACAGTTGTTTNTCTAATGTCCAAACTTCGATCGTCCGTCATCGAAAGGGTTTAGAGGTCGGGAGGGTCCTTTATAGCTATGTGTATGTGTGTAGTGAGTGTTGGGAGAAGTGCAGCAGGATGTGCGAGTTAGGTTGATTTGACTTTCGAGATCATTTTCCTCCAGCCGTCTGCTTCAGCTTTATCCCGTGGTGTCGCTAATTGCAAGCTGTCCGCAACGTTTTTGCGTATTATTCTTTGAAGTATGGCTTGAATAACCTTGGTGGTACATTGAATTCGGTGGGAAACCATTTGTTTTTTCCATCGGGGTACCATAGCACCATATGTGGAATCAAGGCACTTTCAGGCAACCCAGGTAGAACGGGGATGATCTGAACCCAGGAAGGAAGGAGAAGTGGCTCGAACACCGACAAGCGACGCCNAAACGTTTACCCAGTACGTTAACCATTTAGTGTCATCCTCGATATTACGTGGCGGGTTATCGATAGCTATTCATCGAGGATGTAAAGCGGGAATACGGCCACATCCGAAGTCACGTTGCAGAGGAATCTGAGCNCCAGTAGCC]

[+] EMBL BX468759             [GCAAGAATCCGCACGATGTNTTTATTCTTTTTTTTTTATTTTTTTACTTATTCACAGATGTGCGAATGACTTATATAATTTTTCGTCTTGCTCATTCCCTCTGCTACGTCCATTTGCTAACAGTTGTTTNTCTAATGTCCAAACTTCGATCGTCCGTCATCGAAAGGGTTTAGAGGTCGGGAGGGTCCTTTATAGCTATGTGTATGTGTGTAGTGAGTGTTGGGAGAAGTGCAGCAGGATGTGCGAGTTAGGTTGATTTGACTTTCGAGATCATTTTCCTCCAGCCGTCTGCTTCAGCTTTATCCCGTGGTGTCGCTAATTGCAAGCTGTCCGCAACGTTTTTGCGTATTATTCTTTGAAGTATGGCTTGAATAACCTTGGTGGTACATTGAATTCGGTGGGAAACCATTTGTTTTTTCCATCGGGGTACCATAGCACCATATGTGGAATCAAGGCACTTTCAGGCAACCCAGGTAGAACGGGGATGATCTGAACCCAGGAAGGAAGGAGAAGTGGCTCGAACACCGACAAGCGACGCCNAAACGTTTACCCAGTACGTTAACCATTTAGTGTCATCCTCGATATTACGTGGCGGGTTATCGATAGCTATTCATCGAGGATGTAAAGCGGGAATACGGCCACATCCGAAGTCACGTTGCAGAGGAATCTGAGCNCCAGTAGCC]


>consensus_3239#1 GCAAGAATCCGCACGATGTNTTTATTCTTTTTTTTTTATTTTTTTACTTATTCACAGATG TGCGAATGACTTATATAATTTTTCGTCTTGCTCATTCCCTCTGCTACGTCCATTTGCTAA CAGTTGTTTNTCTAATGTCCAAACTTCGATCGTCCGTCATCGAAAGGGTTTAGAGGTCGG GAGGGTCCTTTATAGCTATGTGTATGTGTGTAGTGAGTGTTGGGAGAAGTGCAGCAGGAT GTGCGAGTTAGGTTGATTTGACTTTCGAGATCATTTTCCTCCAGCCGTCTGCTTCAGCTT TATCCCGTGGTGTCGCTAATTGCAAGCTGTCCGCAACGTTTTTGCGTATTATTCTTTGAA GTATGGCTTGAATAACCTTGGTGGTACATTGAATTCGGTGGGAAACCATTTGTTTTTTCC ATCGGGGTACCATAGCACCATATGTGGAATCAAGGCACTTTCAGGCAACCCAGGTAGAAC GGGGATGATCTGAACCCAGGAAGGAAGGAGAAGTGGCTCGAACACCGACAAGCGACGCCN AAACGTTTACCCAGTACGTTAACCATTTAGTGTCATCCTCGATATTACGTGGCGGGTTAT CGATAGCTATTCATCGAGGATGTAAAGCGGGAATACGGCCACATCCGAAGTCACGTTGCA GAGGAATCTGAGCNCCAGTAGCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3239#0      CCGCCCACGCGTCCGCCCACGCGTCCGTGATGAGCTGCGCGCCGAGCAGGACCATGCCCA 60
consensus_3239#1      ------------------------------------------------------------
                                                                                  

consensus_3239#0      GACCCAGGAGAAGCTGCGCAAGGCGCTTGAGCAGCAGATCAAGGAGCTGCAGGTCCGCCT 120
consensus_3239#1      ------------------------------------------------------------
                                                                                  

consensus_3239#0      GGATGAGGCCGAATCGAACGCCCTGAAGGGAGGCAAGAAGGCTATCCAGAAGCTGGAGCA 180
consensus_3239#1      ------------------------------------------------------------
                                                                                  

consensus_3239#0      GCGCGTCCGCGAGCTCGAGTCGGAGCTGGACAGCGAACAGAGACGACATGCCGATGCCCA 240
consensus_3239#1      ------------------------------------------------------------
                                                                                  

consensus_3239#0      GAAGAACCTGCGCAAGTCGGAGCGTCGCATCAAGGAGCTGACCTTCCAGTCGGAGGAAGA 300
consensus_3239#1      ------------------------------------------------------------
                                                                                  

consensus_3239#0      CCGCAAGAACCACGAGCGCATGCAGGATCTGGTTGACAAGCTGCAGCAGAAGATCAAGAC 360
consensus_3239#1      ------------------------------------------------------------
                                                                                  

consensus_3239#0      TTACAAGAGGCAGATTGAGGAAGCCGAGGAGATCGCCGCCCTCAACTTGGCCAAGTTCCG 420
consensus_3239#1      ----------------GCAAGAATCCGCACGATGTNTTTATTCTTTTTTTTTTATTTTTT 44
                                      *    *  *     ***        **   **     * **   

consensus_3239#0      TAAGGCCCAGCAGGAGCTGGAGGAAGCCGAGGAGCGTGCCGACATTGCCGAACAAGCTGC 480
consensus_3239#1      TACTTATTCACAGATGTGCGAATGACTTATATAATTTTTCGTCTTGCTCATTCCCTCTGC 104
                      **        ***  *   **   *       *   *  ** * *   *   *   ****

consensus_3239#0      CACCAAATTCCGCACCAAGGGAGGACGTGCCGGTTCCGTACAGCGTGGTGCTAGCCCAGC 540
consensus_3239#1      TAC--GTCCATTTGCTAACAGTTGTTTNTCTAAT---GTCCAA-ACTTCGATCGTCCGTC 158
                       **           * **  *  *     *   *   ** **       * * * **  *

consensus_3239#0      ACCGTCGGTGGTCAGAGCGTAAAGCGTGTCCGCTGACTCCCAAGCAGTTGTGTTTGATTG 600
consensus_3239#1      ATCGAAAGGGTTTAGAG-GTCGGGAGGGTCC-TTTATAGCTATGTGTATGTGTGT-AGTG 215
                      * **   * * * **** **   * * ****  * *   * * *    ***** * * **

consensus_3239#0      AGAGTATGTGTATGCG-AACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGC 659
consensus_3239#1      AGTGTTGGGAGAAGTGCAGCAGGATGTGCGAGTTAGG----TTGATTTGACTTTCGAGAT 271
                      ** **  *   * * * * * *  * * ***   * *       *   ** *  ***   

consensus_3239#0      CTTCCTAGCAACCCCCCTCTCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCT 719
consensus_3239#1      CATTTT------CCTCCAGCCGTCTGCTTCAGCTTTATCCCGTGGTGTCGCTAATTGCAA 325
                      * *  *      ** **   *  *** * *   *        *  *    **  * *   

consensus_3239#0      TCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTT 779
consensus_3239#1      GCTGTCCGCAACGTTTTTGCGTATTATTCTT-----TGAAGTATGGCTTGAATAACCTTG 380
                       **     *  *  ** * *** ********      *       ***  **   *  * 

consensus_3239#0      CTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACT 839
consensus_3239#1      GTG-GTACATTGAATTCGGTGGGA-AACCATTTGTTTTT-------TCCATCGGGGTACC 431
                       **   * *   ** *   **  *  **  * *** * *       ****    *  ** 

consensus_3239#0      AGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATC 899
consensus_3239#1      ATAGCACCATATGTGGAATCAAGGCACTTTCAGGCAACCCAGGTAGAACGGGGAT-GATC 490
                      * * * * * **             * * ** * ** *     ***     ** * ****

consensus_3239#0      AGGCCAACCACGGCACAGCGCACAAATTCGCCCTTCCCGTCAGTGACCCGCCGCCGGAAG 959
consensus_3239#1      TG---AACCCAGGAAGGAAGGAGAAGT--GGCTCGAACACCGACAAGCGACGCCNAAACG 545
                       *   ****  ** *    * * ** *  * *     *  *    * *  *  *   * *

consensus_3239#0      TCGTTCGAAGCCGTTAACTATCGAATACAAAACATGAAAAAAGAGACACGTAACAACATC 1019
consensus_3239#1      TTTACCCAGTACGTTAACCATTTAGTGTCATCCTCGATAT------TACGTGGCGG-GTT 598
                      *    * *   ******* **  * *   *  *  ** *        ****  *    * 

consensus_3239#0      AACATAAAATGTACCGCGCCGGTACACAGGGAGCTAAGGAATGGGGCACGAAACATCACC 1079
consensus_3239#1      ATCGATAGCTATTCATCGAGGATGTAAAGCGGGAATACGGCCACATC-CGAAGTCACGTT 657
                      * *   *  * * *  **  * *  * ** * *   * *       * ****    *   

consensus_3239#0      AGCAGCAACATCGGTGCCGCGTTCGGTAAGCCAGAAAAGTAGGTAGCGGATGGAGAACGG 1139
consensus_3239#1      -GCAGAGGAATCTGAGCNCCAGTAGCC--------------------------------- 683
                       ****    *** * **  *  * *                                   

consensus_3239#0      AAAGTACTTTCGGACCACCTGTCATCCACCCGCGTCCGGACAGAGGAAGGAAAAGGGAAA 1199
consensus_3239#1      ------------------------------------------------------------
                                                                                  

consensus_3239#0      AGAATCAAATCTTACAGCAGCGTCGCAAATGGAA 1233
consensus_3239#1      ----------------------------------
                                                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)