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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1233 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGTGATGAGCTGCGCGCCGAGCAGGACCATGCCCAGACCCAGGAGAAGCTGCGCAAGGCGCTTGAGCAGCAGATCAAGGAGCTGCAGGTCCGCCTGGATGAGGCCGAATCGAACGCCCTGAAGGGAGGCAAGAAGGCTATCCAGAAGCTGGAGCAGCGCGTCCGCGAGCTCGAGTCGGAGCTGGACAGCGAACAGAGACGACATGCCGATGCCCAGAAGAACCTGCGCAAGTCGGAGCGTCGCATCAAGGAGCTGACCTTCCAGTCGGAGGAAGACCGCAAGAACCACGAGCGCATGCAGGATCTGGTTGACAAGCTGCAGCAGAAGATCAAGACTTACAAGAGGCAGATTGAGGAAGCCGAGGAGATCGCCGCCCTCAACTTGGCCAAGTTCCGTAAGGCCCAGCAGGAGCTGGAGGAAGCCGAGGAGCGTGCCGACATTGCCGAACAAGCTGCCACCAAATTCCGCACCAAGGGAGGACGTGCCGGTTCCGTACAGCGTGGTGCTAGCCCAGCACCGTCGGTGGTCAGAGCGTAAAGCGTGTCCGCTGACTCCCAAGCAGTTGTGTTTGATTGAGAGTATGTGTATGCGAACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTC-TCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCTTCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTTCTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATCAGGCCAACCACGGCACAGCGCACAAATTCGCCCTTCCCGTCAGTGACCCGCCGCCGGAAGTCGTTCGAAGCCGTTAACTATCGAATACAAAACATGAAAAAAGAGACACGTAACAACATCAACATAAAATGTACCGCGCCGGTACACAGGGAGCTAAGGAATGGGGCACGAAACATCACCAGCAGCAACATCGGTGCCGCGTTCGGTAAGCCAGAAAAGTAGGTAGCGGATGGAGAACGGAAAGTACTTTCGGACCACCTGTCATCCACCCGCGTCCGGACAGAGGAAGGAAAAGGGAAAAGAATCAAATCTTACAGCAGCGTCGCAAATGGAA]
[+] EMBL BM630918 [CCGCCCACGCGTCCGCCCACGCGTCCGTGATGAGCTGCGCGCCGAGCAGGACCATGCCCAGACCCAGGAGAAGCTGCGCAAGGCGCTTGAGCAGCAGATCAAGGAGCTGCAGGTCCGCCTGGATGAGGCCGAATCGAACGCCCTGAAGGGAGGCAAGAAGGCTATCCAGAAGCTGGAGCAGCGCGTCCGCGAGCTCGAGTCGGAGCTGGACAGCGAACAGAGACGACATGCCGATGCCCAGAAGAACCTGCGCAAGTCGGAGCGTCGCATCAAGGAGCTGACCTTCCAGTCGGAGGAAGACCGCAAGAACCACGAGCGCATGCAGGATCTGGTTGACAAGCTGCAGCAGAAGATCAAGACTTACAAGAGGCAGATTGAGGAAGCCGAGGAGATCGCCGCCCTCAACTTGGCCAAGTTCCGTAAGGCCCAGCAGGAGCTGGAGGAAGCCGAGGAGCGTGCCGACATTGCCGAACAAGCTGCCACCAAATTCCGCACCAAGGGAGGACGTGCCGGTTCCGTACAGCGTGGTGCTAGCCCAGCACCGTCGGTGGTCAGAGCGTAAAGCGTGTCCGCTGACTCCCAAGCAGTTGTGTTTGATTGAGAGTATGTGTATGCGAACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTC TCTACTGATACGATTGCGATTATT ]
[-] EMBL BM631339 [ CCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTCTTCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCTTCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTTCTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATCAGGCCAACCACGGCACAGCGCACAAATTCGCCCTTCCCGTCAGTGACCCGCCGCCGGAAGTCGTTCGAAGCCGTTAACTATCGAATACAAAACATGAAAAAAGAGACACGTAACAACATCAACATAAAATGTACCGCGCCGGTACACAGGGAGCTAAGGAATGGGGCACGAAACATCACCAGCAGCAACATCGGTGCCGCGTTCGGTAAGCCAGAAAAGTAGGTAGCGGATGGAGAACGGAAAGTACTTTCGGACCACCTGTCATCCACCCGCGTCCGGACAGAGGAAGGAAAAGGGAAAAGAATCAAATCTTACAGCAGCGTCGCAAATGGAA]
consensusID : consensus_3239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[GCAAGAATCCGCACGATGTNTTTATTCTTTTTTTTTTATTTTTTTACTTATTCACAGATGTGCGAATGACTTATATAATTTTTCGTCTTGCTCATTCCCTCTGCTACGTCCATTTGCTAACAGTTGTTTNTCTAATGTCCAAACTTCGATCGTCCGTCATCGAAAGGGTTTAGAGGTCGGGAGGGTCCTTTATAGCTATGTGTATGTGTGTAGTGAGTGTTGGGAGAAGTGCAGCAGGATGTGCGAGTTAGGTTGATTTGACTTTCGAGATCATTTTCCTCCAGCCGTCTGCTTCAGCTTTATCCCGTGGTGTCGCTAATTGCAAGCTGTCCGCAACGTTTTTGCGTATTATTCTTTGAAGTATGGCTTGAATAACCTTGGTGGTACATTGAATTCGGTGGGAAACCATTTGTTTTTTCCATCGGGGTACCATAGCACCATATGTGGAATCAAGGCACTTTCAGGCAACCCAGGTAGAACGGGGATGATCTGAACCCAGGAAGGAAGGAGAAGTGGCTCGAACACCGACAAGCGACGCCNAAACGTTTACCCAGTACGTTAACCATTTAGTGTCATCCTCGATATTACGTGGCGGGTTATCGATAGCTATTCATCGAGGATGTAAAGCGGGAATACGGCCACATCCGAAGTCACGTTGCAGAGGAATCTGAGCNCCAGTAGCC]
[+] EMBL BX468759 [GCAAGAATCCGCACGATGTNTTTATTCTTTTTTTTTTATTTTTTTACTTATTCACAGATGTGCGAATGACTTATATAATTTTTCGTCTTGCTCATTCCCTCTGCTACGTCCATTTGCTAACAGTTGTTTNTCTAATGTCCAAACTTCGATCGTCCGTCATCGAAAGGGTTTAGAGGTCGGGAGGGTCCTTTATAGCTATGTGTATGTGTGTAGTGAGTGTTGGGAGAAGTGCAGCAGGATGTGCGAGTTAGGTTGATTTGACTTTCGAGATCATTTTCCTCCAGCCGTCTGCTTCAGCTTTATCCCGTGGTGTCGCTAATTGCAAGCTGTCCGCAACGTTTTTGCGTATTATTCTTTGAAGTATGGCTTGAATAACCTTGGTGGTACATTGAATTCGGTGGGAAACCATTTGTTTTTTCCATCGGGGTACCATAGCACCATATGTGGAATCAAGGCACTTTCAGGCAACCCAGGTAGAACGGGGATGATCTGAACCCAGGAAGGAAGGAGAAGTGGCTCGAACACCGACAAGCGACGCCNAAACGTTTACCCAGTACGTTAACCATTTAGTGTCATCCTCGATATTACGTGGCGGGTTATCGATAGCTATTCATCGAGGATGTAAAGCGGGAATACGGCCACATCCGAAGTCACGTTGCAGAGGAATCTGAGCNCCAGTAGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3239#0 CCGCCCACGCGTCCGCCCACGCGTCCGTGATGAGCTGCGCGCCGAGCAGGACCATGCCCA 60
consensus_3239#1 ------------------------------------------------------------
consensus_3239#0 GACCCAGGAGAAGCTGCGCAAGGCGCTTGAGCAGCAGATCAAGGAGCTGCAGGTCCGCCT 120
consensus_3239#1 ------------------------------------------------------------
consensus_3239#0 GGATGAGGCCGAATCGAACGCCCTGAAGGGAGGCAAGAAGGCTATCCAGAAGCTGGAGCA 180
consensus_3239#1 ------------------------------------------------------------
consensus_3239#0 GCGCGTCCGCGAGCTCGAGTCGGAGCTGGACAGCGAACAGAGACGACATGCCGATGCCCA 240
consensus_3239#1 ------------------------------------------------------------
consensus_3239#0 GAAGAACCTGCGCAAGTCGGAGCGTCGCATCAAGGAGCTGACCTTCCAGTCGGAGGAAGA 300
consensus_3239#1 ------------------------------------------------------------
consensus_3239#0 CCGCAAGAACCACGAGCGCATGCAGGATCTGGTTGACAAGCTGCAGCAGAAGATCAAGAC 360
consensus_3239#1 ------------------------------------------------------------
consensus_3239#0 TTACAAGAGGCAGATTGAGGAAGCCGAGGAGATCGCCGCCCTCAACTTGGCCAAGTTCCG 420
consensus_3239#1 ----------------GCAAGAATCCGCACGATGTNTTTATTCTTTTTTTTTTATTTTTT 44
* * * *** ** ** * **
consensus_3239#0 TAAGGCCCAGCAGGAGCTGGAGGAAGCCGAGGAGCGTGCCGACATTGCCGAACAAGCTGC 480
consensus_3239#1 TACTTATTCACAGATGTGCGAATGACTTATATAATTTTTCGTCTTGCTCATTCCCTCTGC 104
** *** * ** * * * ** * * * * ****
consensus_3239#0 CACCAAATTCCGCACCAAGGGAGGACGTGCCGGTTCCGTACAGCGTGGTGCTAGCCCAGC 540
consensus_3239#1 TAC--GTCCATTTGCTAACAGTTGTTTNTCTAAT---GTCCAA-ACTTCGATCGTCCGTC 158
** * ** * * * * ** ** * * * ** *
consensus_3239#0 ACCGTCGGTGGTCAGAGCGTAAAGCGTGTCCGCTGACTCCCAAGCAGTTGTGTTTGATTG 600
consensus_3239#1 ATCGAAAGGGTTTAGAG-GTCGGGAGGGTCC-TTTATAGCTATGTGTATGTGTGT-AGTG 215
* ** * * * **** ** * * **** * * * * * ***** * * **
consensus_3239#0 AGAGTATGTGTATGCG-AACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGC 659
consensus_3239#1 AGTGTTGGGAGAAGTGCAGCAGGATGTGCGAGTTAGG----TTGATTTGACTTTCGAGAT 271
** ** * * * * * * * * * *** * * * ** * ***
consensus_3239#0 CTTCCTAGCAACCCCCCTCTCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCT 719
consensus_3239#1 CATTTT------CCTCCAGCCGTCTGCTTCAGCTTTATCCCGTGGTGTCGCTAATTGCAA 325
* * * ** ** * *** * * * * * ** * *
consensus_3239#0 TCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTT 779
consensus_3239#1 GCTGTCCGCAACGTTTTTGCGTATTATTCTT-----TGAAGTATGGCTTGAATAACCTTG 380
** * * ** * *** ******** * *** ** * *
consensus_3239#0 CTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACT 839
consensus_3239#1 GTG-GTACATTGAATTCGGTGGGA-AACCATTTGTTTTT-------TCCATCGGGGTACC 431
** * * ** * ** * ** * *** * * **** * **
consensus_3239#0 AGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATC 899
consensus_3239#1 ATAGCACCATATGTGGAATCAAGGCACTTTCAGGCAACCCAGGTAGAACGGGGAT-GATC 490
* * * * * ** * * ** * ** * *** ** * ****
consensus_3239#0 AGGCCAACCACGGCACAGCGCACAAATTCGCCCTTCCCGTCAGTGACCCGCCGCCGGAAG 959
consensus_3239#1 TG---AACCCAGGAAGGAAGGAGAAGT--GGCTCGAACACCGACAAGCGACGCCNAAACG 545
* **** ** * * * ** * * * * * * * * * * *
consensus_3239#0 TCGTTCGAAGCCGTTAACTATCGAATACAAAACATGAAAAAAGAGACACGTAACAACATC 1019
consensus_3239#1 TTTACCCAGTACGTTAACCATTTAGTGTCATCCTCGATAT------TACGTGGCGG-GTT 598
* * * ******* ** * * * * ** * **** * *
consensus_3239#0 AACATAAAATGTACCGCGCCGGTACACAGGGAGCTAAGGAATGGGGCACGAAACATCACC 1079
consensus_3239#1 ATCGATAGCTATTCATCGAGGATGTAAAGCGGGAATACGGCCACATC-CGAAGTCACGTT 657
* * * * * * ** * * * ** * * * * * **** *
consensus_3239#0 AGCAGCAACATCGGTGCCGCGTTCGGTAAGCCAGAAAAGTAGGTAGCGGATGGAGAACGG 1139
consensus_3239#1 -GCAGAGGAATCTGAGCNCCAGTAGCC--------------------------------- 683
**** *** * ** * * *
consensus_3239#0 AAAGTACTTTCGGACCACCTGTCATCCACCCGCGTCCGGACAGAGGAAGGAAAAGGGAAA 1199
consensus_3239#1 ------------------------------------------------------------
consensus_3239#0 AGAATCAAATCTTACAGCAGCGTCGCAAATGGAA 1233
consensus_3239#1 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||