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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3248#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1066 fasta sequence
[ACTGGCATTTCGCCCGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCTTTACGAAGTCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAAAGCTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATTCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCTCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCGATCCCGACCAAGATTTCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGAGCAAAGCACATTAAAAGTTACACAAAAGCCGGTGAGTCAGAATCGCAAGAGAAACA]
[+] EMBL CNS08PN0 [ACTGGCATTTCGCCCGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCTTTACGAAGTCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAAAGCTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATTCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCTCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCGATCCCGACCAAGATTTCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGAGCAAAGCACAT ]
[-] EMBL CNS08PN1 [ TCCAACTATTTCCTAAAAG TCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTAAGATGCAAACCATCCGTTTGT TCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCTTGATGCGCAAGGCCATTCGCGGGCTTCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGTTCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGAATGCTCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCGATCCCGACCAAGATTTCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGAACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGAGCAAAGCACATTAAAAGTTACACAAAAGCCGGTGAGTCAGAATCGCAAGAGAAACA]
consensusID : consensus_3248#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[GCAGAATCGCGCACGAGGGCAAAATTGGTTCCCCGTTCGGTGTCTCTTGTTGTACAAATCTTTGGGCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCNGTGGTACGATAACTTTGGATAAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACGTCAACACAATGCTCCGTATCTTCCGCAATGCCATACGTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCCAAGCGCTACNGTCAGTAAAAGGATCNACTACGGAGTTCGACCAGGACAGGTGATAAAACAAGCGAACAAACCCGGGTGATCGGTCAANTTCCACGCCGAAAATGGGGTGGTGACCCGGTGGCCNAACACTACTTTACCCCGGAAAGAATGACGGAAACTGCTGGAA]
[+] EMBL BX468831 [GCAGAATCGCGCACGAGGGCAAAATTGGTTCCCCGTTCGGTGTCTCTTGTTGTACAAATCTTTGGGCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCNGTGGTACGATAACTTTGGATAAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACGTCAACACAATGCTCCGTATCTTCCGCAATGCCATACGTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCCAAGCGCTACNGTCAGTAAAAGGATCNACTACGGAGTTCGACCAGGACAGGTGATAAAACAAGCGAACAAACCCGGGTGATCGGTCAANTTCCACGCCGAAAATGGGGTGGTGACCCGGTGGCCNAACACTACTTTACCCCGGAAAGAATGACGGAAACTGCTGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3248#0 ACTGGCATTTCGCCCGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTC 60
consensus_3248#1 ------------------------------------------------------------
consensus_3248#0 TTTACGAAGTCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTC 120
consensus_3248#1 -----------------------GCAGAATCGCGCACGAGGGCAAAATTGGTTCCCCGTT 37
** ** * **** **** * **
consensus_3248#0 CAACTATTTCCTAAAAGCTCGTGCAACTGCTCGA-CGAATACCCGAGATGTTTCATCGTC 179
consensus_3248#1 CGG-TGTCTCTTG-----TTGTACAAATCTTTGGGCCAATATCCCCGTCTTTTCCTCGTT 91
* * * ** * * ** *** * * * * **** ** * **** ****
consensus_3248#0 GGCGCTGACAATGTCGGCTCCCGTCAGATGCAA----ACCATCCGTATGTCGCTCCGCGG 235
consensus_3248#1 ATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGT 151
* ** * * * * * * * * * ** * * ***
consensus_3248#0 TTCGGCCATCGTGCTGATGGGCAAGA-ACAC-CATGATGCGCAAGGCCATTCGCGGGCAT 293
consensus_3248#1 TTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACT-GTAGGCNG 210
** ** ** ** * * ** * *** * * * * * ***
consensus_3248#0 CTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTC 353
consensus_3248#1 TGGTACGATAACTTTGGATAAAAAAAAACAAACAAACAAAACAAAGCTATC-----TACA 265
* * * *** * ** *** ** * *** * * *
consensus_3248#0 GTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGT 413
consensus_3248#1 GTGAAAAATAGAAGCGACGTAA--GAGATAACACACACGTCAACACAATGCTCCGTATCT 323
*** * * **** * ***** *** * ** * ** ** *
consensus_3248#0 GCCCCGGC-CCGTGCCGGTGCGATCGCTCCGCTCG-AGGTCGTCATCCCGGCCCAGAACA 471
consensus_3248#1 TCCGCAATGCCATACGTGGACAAACGCATCACCCGCAAGACGTTCTCCTT-CTCAG---- 378
** * ** * * * * * *** * * ** * * *** *** * ***
consensus_3248#0 CCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCGATCCCGACCA-AGATT 530
consensus_3248#1 -CCATTGCGGCCAAGCG--------CTACNGTCAG----TAAAAGGATCNACTACGGAGT 425
* * *** * * * ** * *** * * ** * ** *
consensus_3248#0 TCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTC 590
consensus_3248#1 TCGACCAGGACAGGTGATAAAACAAGCGA---ACAAACCCGGGTGATCGGT--CAANTTC 480
** * * ** *** * * * *** * * ** * * ** *** **
consensus_3248#0 GGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTG 650
consensus_3248#1 CACGCCGAAAATGGGGTGGTGACCCGGTGGCCNAACACTACTTTACCCCGGAAAGAATGA 540
*** * * * ** * ** **** * * * * *
consensus_3248#0 CAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAG 710
consensus_3248#1 CGGAAACTGCTGGAA--------------------------------------------- 555
* ** * ** **
consensus_3248#0 GCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTC 770
consensus_3248#1 ------------------------------------------------------------
consensus_3248#0 CAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAAC 830
consensus_3248#1 ------------------------------------------------------------
consensus_3248#0 CTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAG 890
consensus_3248#1 ------------------------------------------------------------
consensus_3248#0 TTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACGGCCCAATGGCGACAC 950
consensus_3248#1 ------------------------------------------------------------
consensus_3248#0 GCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGA 1010
consensus_3248#1 ------------------------------------------------------------
consensus_3248#0 GCAAAGCACATTAAAAGTTACACAAAAGCCGGTGAGTCAGAATCGCAAGAGAAACA 1066
consensus_3248#1 --------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||