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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1186 fasta sequence
[CCGCGGACGCGTGGGCGCGCCCAAACCACCAAGTCGTTCGAGCAGTCGTTCGGTCAGTCGCTGACCGGCGTTGCTCTGCGCTTCCAGGCCAAGTACGACAAGGACTTCATCGACTACGCCTACCTGATGAAGCACATTGAGCAGCACGACTACTGGTCTGCGCTGGTCTATCCGTTCGCCTCGGAGACCTACCACTACCATCAGTTTAACCTGTACTACGATGCTCAGCGCACCAGCGTGAAGAATGTCAAGTTTGTACTGCAGCACAAGCAGGCCGACTACGACCAGGACTTCCAGACCGCCGACGTGAAACACCCGAAGAGTCGCCACGGATACTCTGGATTCTACAACGAGTACAACTACGCCCAGCCCTTCGTCTACTACGCCGGAAGCCAGCGCCGACAGGAGCAGTTCATGCGCAACGCTGGTGCCGGTATTCGCAACAGCGACGTCAATGTCTACGATTTCGGAATCGTGTTCGAGGGCAAGCAGCAGAAGGCTGAGTTCGTGTTTACCACCGCCTATGCCGACAGCCCAGTCGACGAGAAGGAGCGTCTGTTGATGTTCCTGTCCTTCAGCCCGTACGTGTCGTCCAGTGCCTTCTTCGAGTTCATTCCGTTCTCTTGAAGGCTATCCTTGGCCAGTACAAGCAGAACGACTACAACATCGATATCATCCCCCACGGACACGAGCTCCCGATGGTCTACATCAATGGCAAGCCCCAGCAGATCCACGAGAAGTACGCCGTCGAAATGTACACCAATGATGATGGTGGCGATCAGCCGCTGATCCGCGTCTATGCCCTGCCTGGCAACGAGCTGGAGATCAGCTTCCGCGATGACGACATCAAGATCGTGTTCGACGGATACCGTGCCCGTTTCTTCGCCGACCAGTCGTACTTCAACAACTTCGTCGGTCTTTGCGGTACCAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCGGCTCAGGCCTACTTCACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTC]
[+] EMBL BM575590 [CCGCGGACGCGTGGGCGCGCCCAAACCACCAAGTCGTTCGAGCAGTCGTTCGGTCAGTCGCTGACCGGCGTTGCTCTGCGCTTCCAGGCCAAGTACGACAAGGACTTCATCGACTACGCCTACCTGATGAAGCACATTGAGCAGCACGACTACTGGTCTGCGCTGGTCTATCCGTTCGCCTCGGAGACCTACCACTACCATCAGTTTAACCTGTACTACGATGCTCAGCGCACCAGCGTGAAGAATGTCAAGTTTGTACTGCAGCACAAGCAGGCCGACTACGACCAGGACTTCCAGACCGCCGACGTGAAACACCCGAAGAGTCGCCACGGATACTCTGGATTCTACAACGAGTACAACTACGCCCAGCCCTTCGTCTACTACGCCGGAAGCCAGCGCCGACAGGAGCAGTTCATGCGCAACGCTGGTGCCGGTATTCGCAACAGCGACGTCAATGTCTACGATTTCGGAATCGTGTTCGAGGGCAAGCAGCAGAAGGCTGAGTTCGTGTTTACCACCGCCTATGCCGACAGCCCAGTCGACGAGAAGGAGCGTCTGTTGATGTTCCTGTCCTTCAGCCCGTACGT ]
[+] EMBL BM592635 [ CCGGTCGACGAGAAGGAGCGTCTGTTGATGTTCCTGTCCTTCAGCCCGTACGTGTCGTCCAGTGCCTTCTTCGAGTTCATTCCGTTCTCTTGAAGGCTATCCTTGGCCAGTACAAGCAGAACGACTACAACATCGATATCATCCCCCACGGACACGAGCTCCCGATGGTCTACATCAATGGCAAGCCCCAGCAGATCCACGAGAAGTACGCCGTCGAAATGTACACCAATGATGATGGTGGCGATCAGCCGCTGATCCGCGTCTATGCCCTGCCTGGCAACGAGCTGGAGATCAGCTTCCGCGATGACGACATCAAGATCGTGTTCGACGGATACCGTGCCCGTTTCTTCGCCGACCAGTCGTACTTCAACAACTTCGTCGGTCTTTGCGGTACCAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCGGCTCAGGCCTACTTCACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTC]
consensusID : consensus_3254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence
[TTTTTTTTCATTGCTTCCATTATTTATTTCCAATTTTTCTGTATCCATTTCCTCTTCTTTCTATTGGCTGTTTTCGTTCAATACAGCTCCCGCACGGGACCTTCTCTCAGCTGATCGGTGTATTCCAATACATGATGTACCCTCTCTCTCTCTCTCTCTCGCTCCTCTTATTTAGTGATGGCGCGCTTCTTAAATTAGCTGGAAAAAAAATACTTTTGTGGTAAGAAAATGGCTCACACACACAATCTTCTTCCTTGCTATTGTTTTGTTATGATGGCGTGTGGAGGTCGCTCAATTAACGAGAGAGGTCCGTGTATGGTTGGTGGTTTGTAAAAAGGTAAACGACGACGCTCTAAGGCACCTTAACAATTTGTATCGTTCGTTATACTCCTCCTTTGCTTATTTCCTTTTCCTTCTCACTACACAAAAAAGCTGCATTTTCTCTTCTACTTTCCATTGCATTTTCTTTTCATTTTCAAACGGTTACTTTTGAAAATAGTTGTTGTTGTTGTTANATTGCTCTCTCTCTCCCTAACTCCCTTCCTT]
[+] EMBL AGA284066 [TTTTTTTTCATTGCTTCCATTATTTATTTCCAATTTTTCTGTATCCATTTCCTCTTCTTTCTATTGGCTGTTTTCGTTCAATACAGCTCCCGCACGGGACCTTCTCTCAGCTGATCGGTGTATTCCAATACATGATGTACCCTCTCTCTCTCTCTCTCTCGCTCCTCTTATTTAGTGATGGCGCGCTTCTTAAATTAGCTGGAAAAAAAATACTTTTGTGGTAAGAAAATGGCTCACACACACAATCTTCTTCCTTGCTATTGTTTTGTTATGATGGCGTGTGGAGGTCGCTCAATTAACGAGAGAGGTCCGTGTATGGTTGGTGGTTTGTAAAAAGGTAAACGACGACGCTCTAAGGCACCTTAACAATTTGTATCGTTCGTTATACTCCTCCTTTGCTTATTTCCTTTTCCTTCTCACTACACAAAAAAGCTGCATTTTCTCTTCTACTTTCCATTGCATTTTCTTTTCATTTTCAAACGGTTACTTTTGAAAATAGTTGTTGTTGTTGTTANATTGCTCTCTCTCTCCCTAACTCCCTTCCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3254#0 CCGCGGACGCGTGGGCGCGCCCAAACCACCAAGTCGTTCGAGCAGTCGTTCGGTCAGTCG 60
consensus_3254#1 ----------------------------------TTTTTTTTCATTGCTTCCATTATTTA 26
** ** * *** * * *
consensus_3254#0 CTGACCGGCGTTGCTCTGCGCTTCCAGGCCAAGTACGACAAG--GACTTCATCGACTACG 118
consensus_3254#1 TTT-CCAATTTTTCTGTATCCATTTCCTCTTCTTTCTATTGGCTGTTTTCGTTCAATACA 85
* ** ** ** * * * * * * * * * *** * * ***
consensus_3254#0 CCTACCTGATGAAGCACATTGAGCAGCACGACTACTGGTCTGCGCTGGTCTATCCGTTCG 178
consensus_3254#1 GCTCCCGCACGGGAC-CTTCTCTCAGC----TGATCGGTGTATTCCAATACATGATGTAC 140
** ** * * * * * **** * *** * * * ** *
consensus_3254#0 CCTCGGAGACCTACCACTACCATCAGTTTAACCTGTACTACGATGCTCAGCGCACCAGCG 238
consensus_3254#1 CCTCTCTCTCTCTCTCTCTCGCTCCTCTTATTTAGTGATGGCGCGCTTCTTAAATTAGCT 200
**** * * * ** *** ** * *** * ***
consensus_3254#0 TGAAGAATGTCAAGTTTGTACTGCAGCACAAGCAGGCCGACTACGACCAGGACTTCCAGA 298
consensus_3254#1 GGAAAAAAAATACTTTTGTGGTAAGAAAATGGCTCACACAC-ACAATCTT--CTTCCTTG 257
*** ** * ***** * * ** * ** ** * * *****
consensus_3254#0 CCGCCGACGTGAAACACCCGAAGAGTCGCCACGGATACTCTGGATTCTACAACGAGTACA 358
consensus_3254#1 CTATTGTTTTGTTAT----GATGGCGTGTGGAGGTCGCTC-AATTAACGAGAGAGGTCCG 312
* * ** * ** * * ** *** * * ** *
consensus_3254#0 ACTACGCCCAGCCCTTCGTCTACTACGCCGGAAGCCAGCGCCGACAGGAGCAGTTCATGC 418
consensus_3254#1 TGTATGGTTGGTGGTTTGT--AAAAAGGTAAACGACGACGCT--CTAAGGCACCTTA--- 365
** * * ** ** * * * * * * *** * *** * *
consensus_3254#0 GCAACGCTGGTGCCGGTATTCGCAACAGCGACGTCAATGTCTACGATTTCGGAATCGTGT 478
consensus_3254#1 ACAAT--TTGTATCG---TTCGTTATA-CTCCTCCTTTGCTTA---TTTCCTTTTCCTTC 416
*** * ** ** **** * * * * * ** ** **** ** *
consensus_3254#0 TCGAGGGCAAGCAGCAGAAGGCTGAGTTCGTGTTTACCACCGCCTATGCCGACAGCCCAG 538
consensus_3254#1 TCACTA-----CACAAAAAAGCTGCATTT-TCTCTTCTACTTTCCATTGC-ATTTTCTTT 469
** ** * ** **** ** * * * * ** * ** * * *
consensus_3254#0 TCGACGAGAAGGAGCGTCTGTTGATGTTCCTGTCCTTCAGCCCGTACGTGTCGTCCAGTG 598
consensus_3254#1 TCATTTTCAAACGGTTACTTTTGAAAATA--GTTGTTGTTGTTGT-TANATTGCTCTCT- 525
** ** * ** **** * ** ** ** * * * *
consensus_3254#0 CCTTCTTCGAGTTCATTCCGTTCTCTTGAAGGCTATCCTTGGCCAGTACAAGCAGAACGA 658
consensus_3254#1 CTCTCCCTAACTCCCTTCCTT--------------------------------------- 546
* ** * * * **** *
consensus_3254#0 CTACAACATCGATATCATCCCCCACGGACACGAGCTCCCGATGGTCTACATCAATGGCAA 718
consensus_3254#1 ------------------------------------------------------------
consensus_3254#0 GCCCCAGCAGATCCACGAGAAGTACGCCGTCGAAATGTACACCAATGATGATGGTGGCGA 778
consensus_3254#1 ------------------------------------------------------------
consensus_3254#0 TCAGCCGCTGATCCGCGTCTATGCCCTGCCTGGCAACGAGCTGGAGATCAGCTTCCGCGA 838
consensus_3254#1 ------------------------------------------------------------
consensus_3254#0 TGACGACATCAAGATCGTGTTCGACGGATACCGTGCCCGTTTCTTCGCCGACCAGTCGTA 898
consensus_3254#1 ------------------------------------------------------------
consensus_3254#0 CTTCAACAACTTCGTCGGTCTTTGCGGTACCAACAATGGCGAAGGAGAGGACGACTTCAT 958
consensus_3254#1 ------------------------------------------------------------
consensus_3254#0 CACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCAC 1018
consensus_3254#1 ------------------------------------------------------------
consensus_3254#0 CGGCATGAACTGCAGTGGGCCGGCTCAGGCCTACTTCACCGAGTACCACCAGAAGGCTCA 1078
consensus_3254#1 ------------------------------------------------------------
consensus_3254#0 GCAGCACTGCGTCAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGG 1138
consensus_3254#1 ------------------------------------------------------------
consensus_3254#0 ACGTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTC 1186
consensus_3254#1 ------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||