|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 976 fasta sequence
[CCGCGCCGAGCCTGTACTATTACCTCAGCCGTCTAGTCAGAATAAGATGCAACATTCGCCAAAAAATACGCTAAGAAAACCGATGGGCCATCACCATGGCGTCAACTCGGAAACGTTGTTCCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTTCGGTACACTGCGATCGCACCAGGGTGATAATTATCGTCGCGGTGACGGATTTTCAACGACCAGAAGTGTCAAAAAAGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGGACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTATGAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGACGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGACCAACCACCCCACACCCCAACTATACACTCTGCTACCCCCCTCACTATCCTTCCACTTCTGCGGGCGCTGGCAGCTCGTACACTCCCGGCCCGTCCGCCGCCGCTGCCGCCTATCAACCGGTCGCCTCGATGCCACGGTCCGCCTCGCCGCTCGCCAGCAGTTCGCGCATCCACACGCACCACCTGCTGAACAGCACCAACAGCAGCGGCAACGATACGACCAAAAAGCTGAACCGGCTCTCCACCTCCTCCTCGCTA]
[+] EMBL BM633938 [CCGCGCCGAGCCTGTACTATTACCTCAGCCGTCTAGTCAGAATAAGATGCAACATTCGCCAAAAAATACGCTAAGAAAACCGATGGGCCATCACCATGGCGTCAACTCGGAAACGTTGTTCCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTTCGGTACACTGCGATCGCACCAGGGTGATAATTATCGTCGCGGTGACGGATTTTCAACGACCAGAAGTGTCAAAAAAGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGGACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTATGAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCA ]
[+] EMBL BM586184 [ CCGCACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGACGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGACCAACCACCCCACACCCCAACTATACACTCTGCTACCCCCCTCACTATCCTTCCACTTCTGCGGGCGCTGGCAGCTCGTACACTCCCGGCCCGTCCGCCGCCGCTGCCGCCTATCAACCGGTCGCCTCGATGCCACGGTCCGCCTCGCCGCTCGCCAGCAGTTCGCGCATCCACACGCACCACCTGCTGAACAGCACCAACAGCAGCGGCAACGATACGACCAAAAAGCTGAACCGGCTCTCCACCTCCTCCTCGCTA]
consensusID : consensus_3257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[CCGCGGAAACGTTGTTCCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTTCGGTACACTGCGATCGCACCAGGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGGACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTATGAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGACGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGCCCAACCACCCCACAGCCCAACTACACACTCTGCTACCCCACTCACTATCCTTCCACTTCTGCGGG]
[+] EMBL BM590507 [CCGCGGAAACGTTGTTCCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTTCGGTACACTGCGATCGCACCAGGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGGACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTATGAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGACGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGCCCAACCACCCCACAGCCCAACTACACACTCTGCTACCCCACTCACTATCCTTCCACTTCTGCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3257#0 CCGCGCCGAGCCTGTACTATTACCTCAGCCGTCTAGTCAGAATAAGATGCAACATTCGCC 60
consensus_3257#1 ------------------------------------------------------------
consensus_3257#0 AAAAAATACGCTAAGAAAACCGATGGGCCATCACCATGGCGTCAACTCGGAAACGTTGTT 120
consensus_3257#1 --------------------------------------------CCGCGGAAACGTTGTT 16
* *************
consensus_3257#0 CCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTT 180
consensus_3257#1 CCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTT 76
************************************************************
consensus_3257#0 CGGTACACTGCGATCGCACCAGGGTGATAATTATCGTCGCGGTGACGGATTTTCAACGAC 240
consensus_3257#1 CGGTACACTGCGATCGCACCAGG------------------------------------- 99
***********************
consensus_3257#0 CAGAAGTGTCAAAAAAGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGG 300
consensus_3257#1 -----------------TATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGG 142
*******************************************
consensus_3257#0 ACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTAT 360
consensus_3257#1 ACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTAT 202
************************************************************
consensus_3257#0 GAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCA 420
consensus_3257#1 GAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCA 262
************************************************************
consensus_3257#0 TTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATC 480
consensus_3257#1 TTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATC 322
************************************************************
consensus_3257#0 CAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATT 540
consensus_3257#1 CAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATT 382
************************************************************
consensus_3257#0 AAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGAC 600
consensus_3257#1 AAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGAC 442
************************************************************
consensus_3257#0 GACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGA 660
consensus_3257#1 GACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGA 502
************************************************************
consensus_3257#0 CGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGACC 720
consensus_3257#1 CGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGCCC 562
********************************************************* **
consensus_3257#0 AACCACCCCACACCCCAACTATACACTCTGCTACCCCCCTCACTATCCTTCCACTTCTGC 780
consensus_3257#1 AACCACCCCACAGCCCAACTACACACTCTGCTACCCCACTCACTATCCTTCCACTTCTGC 622
************ ******** *************** **********************
consensus_3257#0 GGGCGCTGGCAGCTCGTACACTCCCGGCCCGTCCGCCGCCGCTGCCGCCTATCAACCGGT 840
consensus_3257#1 GGG--------------------------------------------------------- 625
***
consensus_3257#0 CGCCTCGATGCCACGGTCCGCCTCGCCGCTCGCCAGCAGTTCGCGCATCCACACGCACCA 900
consensus_3257#1 ------------------------------------------------------------
consensus_3257#0 CCTGCTGAACAGCACCAACAGCAGCGGCAACGATACGACCAAAAAGCTGAACCGGCTCTC 960
consensus_3257#1 ------------------------------------------------------------
consensus_3257#0 CACCTCCTCCTCGCTA 976
consensus_3257#1 ----------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||