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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGGTGTTAGTAACTAAATATTGTAAGAAAGATTCCAGAGACATTTACGGAAAAGAAACAAGACGCGCGAGTGGCGGAAGCGCAGTGTAGCGTCCGAGAGGGGAGGAATACAGGGAAGGAGTGTGAGGGAAGGGGAGAGTGTATTCGAGCCGCGTGCGTGAATCCAGCACCTCCACATTGCCGCCGGTCTGCGGGGAGAAAACTACACCAGTAGCGCGCCGGAAGATTGCGATCGATCGAGCGACGAGCGAGAGCAGCAAGAGAAGCAACAAATTCCGCAAATGGTAGCAGATCCAGTAACAACAACAACAACGCAGGAGAGAAGAATTGACACAAGGATACAGCAGATTTAGCAACCCAGCAGTCCGCAGTAGCAGCAGCAGGGGCACCCCATTTAGCGCCGCGGCTGTCTACGGAGAAAGAACATCCAGAAGAACAACAGCCACGTCCTTTCTATATAAACAAAAATAAAAAAAAAATCACGGTGTAAAAGGAATTAATAACAGAAGAAAGCCCTAAATCTACTACTTTTATTGCTAATAAAATTATTC]
[+] EMBL BM576958 [CCGCGGACGCGTGGGCGGACGCGTGGGGTGTTAGTAACTAAATATTGTAAGAAAGATTCCAGAGACATTTACGGAAAAGAAACAAGACGCGCGAGTGGCGGAAGCGCAGTGTAGCGTCCGAGAGGGGAGGAATACAGGGAAGGAGTGTGAGGGAAGGGGAGAGTGTATTCGAGCCGCGTGCGTGAATCCAGCACCTCCACATTGCCGCCGGTCTGCGGGGAGAAAACTACACCAGTAGCGCGCCGGAAGATTGCGATCGATCGAGCGACGAGCGAGAGCAGCAAGAGAAGCAACAAATTCCGCAAATGGTAGCAGATCCAGTAACAACAACAACAACGCAGGAGAGAAGAATTGACACAAGGATACAGCAGATTTAGCAACCCAGCAGTCCGCAGTAGCAGCAGCAGGGGCACCCCATTTAGCGCCGCGGCTGTCTACGGAGAAAGAACATCCAGAAGAACAACAGCCACGTCCTTTCTATATAAACAAAAATAAAAAAAAAATCACGGTGTAAAAGGAATTAATAACAGAAGAAAGCCCTAAATCTACTACTTTTATTGCTAATAAAATTATTC]
consensusID : consensus_3261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[ATTCTACCGGTTCCATCGTCCCCGGAAGCACATTGTCCGCTCATGAGGGCTTTATTCGGGAATGGAATGTAACACTCGGTTTTCCAAAAAGCAAACGGCTTGAGCAAACAACACCGCGCGTTTATGGCAGCATGAAAATGAACAGATTTTCGCTACAAATTCTCCGCATACAACACGACGGCGTCTGGAATGATGCTAACCCCGTGGTCCGACTCCCCCGGTAATCGAGGTCCTCCGCACAGCTTTTGGTAGAAAGGTGGTACCGGCCGGGGGTTTACTTGGATCTCGCACGCATTTCCCTGCGCTTACGCTTTAACCTCCGCATACGCTTTTAACGCCACTAAGCTCTAATTTTTCACGGCAGCAAAAGACGATTTACGTCCGCACTGCACGAATTGATTGGATGAAAGAGCCAGTTGGCCAACAGTTCTCGAGGATTTCGCAC]
[+] EMBL CNS09FWD [ATTCTACCGGTTCCATCGTCCCCGGAAGCACATTGTCCGCTCATGAGGGCTTTATTCGGGAATGGAATGTAACACTCGGTTTTCCAAAAAGCAAACGGCTTGAGCAAACAACACCGCGCGTTTATGGCAGCATGAAAATGAACAGATTTTCGCTACAAATTCTCCGCATACAACACGACGGCGTCTGGAATGATGCTAACCCCGTGGTCCGACTCCCCCGGTAATCGAGGTCCTCCGCACAGCTTTTGGTAGAAAGGTGGTACCGGCCGGGGGTTTACTTGGATCTCGCACGCATTTCCCTGCGCTTACGCTTTAACCTCCGCATACGCTTTTAACGCCACTAAGCTCTAATTTTTCACGGCAGCAAAAGACGATTTACGTCCGCACTGCACGAATTGATTGGATGAAAGAGCCAGTTGGCCAACAGTTCTCGAGGATTTCGCAC]
consensusID : consensus_3261#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence
[CCGCCCACGCGTCCGGCATCATGAAGTTATACGCCTTTGCTCTCGTGCTATGCGTCGGTCTGGCCGTAGGGGCCGAGGTTGATAGTGTACCGGAAGTGCCATCGGACCTGCAGCAGCAACTGGACGAGCTGCAGCTGGCCGATAAACCAGAAGCTCCTGTGGATGACGCCGAACAACCTCTTCCCCCAAGTGGCGATGAA]
[+] EMBL BM645019 [CCGCCCACGCGTCCGGCATCATGAAGTTATACGCCTTTGCTCTCGTGCTATGCGTCGGTCTGGCCGTAGGGGCCGAGGTTGATAGTGTACCGGAAGTGCCATCGGACCTGCAGCAGCAACTGGACGAGCTGCAGCTGGCCGATAAACCAGAAGCTCCTGTGGATGACGCCGAACAACCTCTTCCCCCAAGTGGCGATGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3261#1 -------------------------------ATTCTACCGGTTCCATCGTCCCCGGAAGC 29
consensus_3261#2 ------------------------------------------------------------
consensus_3261#0 CCGCGGACGCGTGGGCGGACGCGTGGGGTGTTAGTAACTAAATATTGTAAGAAAGATTCC 60
consensus_3261#1 ACATTGTCCGCTCATGAGGGCTTTATTCGGGAATGGAATGTAACACTCGGTTTTCCAAAA 89
consensus_3261#2 ------------------------------------------------------------
consensus_3261#0 AGAGACATTTACGGAAAAGAAACAAGACGCGCGAGTGGCGGAAGCGCAGTGTAGCGTCCG 120
consensus_3261#1 AGCAAACGGCTTGAGCAAACAACACCGCGCGTTTATGGCAGCATGAAAATGAACAGATTT 149
consensus_3261#2 ----------------------CCGCCCACGCGTCCGGCATCATGAAGTTATACGCCTTT 38
consensus_3261#0 AGAGGGGAGGAATACAGGGAAGGAGTGTGAGGGAAGGGGAGAGTGTATTCGAGC-CGCGT 179
* ** * ** * * *
consensus_3261#1 TCGCTACAAATTCTCCGCATACAACACGACGGCGT-CTGGAATGATGCTAACCCCGTGGT 208
consensus_3261#2 GCTCTCGTGCTATGCGTCGGTCTGGCCGTAGGGGC-CGAGGTTGATAGTGTACCGGAAGT 97
consensus_3261#0 GCGTGAATCCAGCACCTCCACATTGCCGCCGGTCTGCGGGGAGAAAACTACACCAGTAGC 239
* * * ** ** * * * * ** * *
consensus_3261#1 CCGACTCCCC-CGGTAATCG-AGGTCCTCCGCACAGCTTTTGGTAGAAAGGTGGTACCGG 266
consensus_3261#2 GCCATCGGAC-CTGCAGCAG-CAACTGGACGAGCTGCAGCTGGCCGATAAACCAGAAGCT 155
consensus_3261#0 GCGCCGGAAGATTGCGATCGATCGAGCGACGAGCGAGAGCAGCAAGAGAAGCAACAAATT 299
* * * ** * * ** * *
consensus_3261#1 CCGGGGGTTTACTTGGATCTCGCACGCATTTCCCTGCGCTTACGCTTTAACCTCCGCATA 326
consensus_3261#2 CCTGTGGATGACGCCGA----ACAACCTCTTCCCCCAAGTGGCGATGAA----------- 200
consensus_3261#0 CCGCAAATGGTAGCAGATCCAGTAACAACAACAACAACGCAGGAGAGAAGAATTGACACA 359
** ** * * *
consensus_3261#1 CGCTTTTAACGCCACTAA-GCTCTAATTTTTCACGGCAGCAAAAGACGATTTACGTCCGC 385
consensus_3261#2 ------------------------------------------------------------
consensus_3261#0 AGGATACAGCAGATTTAGCAACCCAGCAGTCCGCAGTAGCAGCAGCAGGGGCACCCCATT 419
consensus_3261#1 --ACTGCACGAATTGATTGGATGAAAGAGCCAGTTGGCCAACAGTTCTCGAGGATTTCGC 443
consensus_3261#2 ------------------------------------------------------------
consensus_3261#0 TAGCGCCGCGGCTGTCTACGGAGAAAGAACATCCAGAAGAACAACAGCCACGTCCTTTCT 479
consensus_3261#1 AC---------------------------------------------------------- 445
consensus_3261#2 ------------------------------------------------------------
consensus_3261#0 ATATAAACAAAAATAAAAAAAAAATCACGGTGTAAAAGGAATTAATAACAGAAGAAAGCC 539
consensus_3261#1 ------------------------------------
consensus_3261#2 ------------------------------------
consensus_3261#0 CTAAATCTACTACTTTTATTGCTAATAAAATTATTC 575
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||