cluster # 3265

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Anopheles gambiae
cluster # 3265 cluster # 3265 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3265#0 length = 673 sequences # 2

consensus_3265#1 length = 131 sequences # 1

consensusID : consensus_3265#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 673
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCAAATTAGAAGCTCAAGATGGGGCGCCGTCCAGCGAGATGCTACCGCTACTGCAAGAACAAGCCGTATCCGAAGTCGCGCTTCTGTCGCGGTGTGCCGGACCCGAAGATCCGCATCTTCGATCTGGGCCGCAAGAAGGCGTGCGTGGAAGACTTCCCGCTCTGCGTCCATCTCGTGTCGGACGAGTACGAGCAGCTGAGCTCGGAGGCGCTCGAGGCAGGCCGTATCTGCTGCAACAAATACCTGGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGCATGCGTCTCCATCCGTTCCACGTGATTCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGTGCGTTCGGCAAGCCGCAGGGTACGGTCGCGCGCGTCCACATCGGCCAGCCGATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTGATCGAGGCGCTGCGCCGTGCCAAGTTCAAGTTCCCCGGCCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGATCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGACTCGTCCCGGACGGATGTGGCGTACAGTTCCGCAACGATCACGGACCGCTGGTCAAGTGGG]

[+] EMBL BM588753             [CCGCCCACGCGTCCGCCCACGCGTCCGGCAAATTAGAAGCTCAAGATGGGGCGCCGTCCAGCGAGATGCTACCGCTACTGCAAGAACAAGCCGTATCCGAAGTCGCGCTTCTGTCGCGGTGTGCCGGACCCGAAGATCCGCATCTTCGATCTGGGCCGCAAGAAGGCGTGCGTGGAAGACTTCCCGCTCTGCGTCCATCTCGTGTCGGACGAGTACGAGCAGCTGAGCTCGGAGGCGCTCGAGGCAGGCCGTATCTGCTGCAACAAATACCTGGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGCATGCGTCTCCATCCGTTCCACGTGATTCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGTGCGTTCGGCAAGCCGCAGGGTACGGTCGCGCGCGTCCACATCGGCCAGCCGATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTGATCGAGGCGCTGCGCCGTGCCAAGTTCAAGTTCCCCGGCCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGATCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGACTCGTCCCGGACGGATGTGGCGTACAGTTCCGCAACGATCACGGACCGCTGGTCAAGTGGG]
[+] EMBL BM575480             [CCGCCCACGCGTCCGCCCACGCGTCCG       AGAAGCTCAAGATGGGGCGCCGTCCAGCGAGATGCTACCGCTACTGCAAGAACAAGCCGTATCCGAAGTCGCGCTTCTGTCGCGGTGTGCCGGACCCGAAGATCCGCATCTTCGATCTGGGCCGCAAGAAGGCGTGCGTGGAAGACTTCCCGCTCTGCGTCCATCTCGTGTCGGACGAGTACGAGCAGCTGAGCTCGGAGGCGCTCGAGGCAGGCCGTATCTGCTGCAACAAATACCTGGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGCATGCGTCTCCATCCGTTCCACGTGATTCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGTGCGTTCGGCAAGCCGCAGGGTACGGTCGCGCGCGTCCACATCGGCCAGCCGATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTGATCGAGGCGCTGCGCCGTGCCAAGTTCAAGTTCCCCGGCCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGATCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGACTCGTCCCGGACGGAT                                             ]




>consensus_3265#0
CCGCCCACGCGTCCGCCCACGCGTCCGGCAAATTAGAAGCTCAAGATGGGGCGCCGTCCA
GCGAGATGCTACCGCTACTGCAAGAACAAGCCGTATCCGAAGTCGCGCTTCTGTCGCGGT
GTGCCGGACCCGAAGATCCGCATCTTCGATCTGGGCCGCAAGAAGGCGTGCGTGGAAGAC
TTCCCGCTCTGCGTCCATCTCGTGTCGGACGAGTACGAGCAGCTGAGCTCGGAGGCGCTC
GAGGCAGGCCGTATCTGCTGCAACAAATACCTGGTGAAGTTCTGCGGCAAGGACCAGTTC
CACATCCGCATGCGTCTCCATCCGTTCCACGTGATTCGCATCAACAAGATGTTGTCCTGT
GCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGTGCGTTCGGCAAGCCGCAGGGTACG
GTCGCGCGCGTCCACATCGGCCAGCCGATCATGTCGGTGCGCTCGAGCGACCGCTTCAAG
GCGCAGGTGATCGAGGCGCTGCGCCGTGCCAAGTTCAAGTTCCCCGGCCGCCAGAAGATC
TTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGATCGCGACGTGTACCAGAAGCACAAC
GACGAGGGCCGACTCGTCCCGGACGGATGTGGCGTACAGTTCCGCAACGATCACGGACCG
CTGGTCAAGTGGG

consensusID : consensus_3265#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 131
fasta sequence

                              [AAGAAGAGCACCGGACACAGCGCACCCGCCACGCAAACCAAGACCACGACGGGCAGCGGCGGCACCGGTAACGGTAGCTGGGGACCGCATTACAAGAATCGGTACCATTTCGTCAGCAGGCACTTCTCGTA]

[+] EMBL BX608400             [AAGAAGAGCACCGGACACAGCGCACCCGCCACGCAAACCAAGACCACGACGGGCAGCGGCGGCACCGGTAACGGTAGCTGGGGACCGCATTACAAGAATCGGTACCATTTCGTCAGCAGGCACTTCTCGTA]




>consensus_3265#1
AAGAAGAGCACCGGACACAGCGCACCCGCCACGCAAACCAAGACCACGACGGGCAGCGGC
GGCACCGGTAACGGTAGCTGGGGACCGCATTACAAGAATCGGTACCATTTCGTCAGCAGG
CACTTCTCGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3265#0      CCGCCCACGCGTCCGCCCACGCGTCCGGCAAATTAGAAGCTCAAGATGGGGCGCCGTCCA 60
consensus_3265#1      ------------------------------------------------------------
                                                                                  

consensus_3265#0      GCGAGATGCTACCGCTACTGCAAGAACAAGCCGTATCCGAAGTCGCGCTTCTGTCGCGGT 120
consensus_3265#1      ------------------------------------------------------------
                                                                                  

consensus_3265#0      GTGCCGGACCCGAAGATCCGCATCTTCGATCTGGGCCGCAAGAAGGCGTGCGTGGAAGAC 180
consensus_3265#1      ------------------------------------------AAGAAGAGCACCGGACAC 18
                                                                ***  * **   * * **

consensus_3265#0      TTCCCGCTCTGCGTCCATCTCGTGTCGGACGAGTACGAGCAGCTGAGCTCGGAGGCGCTC 240
consensus_3265#1      AGCGCACCCGCCACGCAAACCA----AGACCACGACGGGCAGCGG----CGGCACCGGTA 70
                        * * * *  *   **   *      *** *  *** ***** *    ***   ** * 

consensus_3265#0      GAGGCAGGCCGTATCTGCTGCAACAAATACCTGGTGAAGTTCTGCGGCAAGGACCAGTTC 300
consensus_3265#1      ACGGTAGCTGGGGACCGC-ATTACAAGAATCGGTACCATTTCGTCAGCAGGCACTTCTCG 129
                        ** **   *   * **    ****  * * *    * ***  * *** * **   *  

consensus_3265#0      CACATCCGCATGCGTCTCCATCCGTTCCACGTGATTCGCATCAACAAGATGTTGTCCTGT 360
consensus_3265#1      TA---------------------------------------------------------- 131
                       *                                                          

consensus_3265#0      GCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGTGCGTTCGGCAAGCCGCAGGGTACG 420
consensus_3265#1      ------------------------------------------------------------
                                                                                  

consensus_3265#0      GTCGCGCGCGTCCACATCGGCCAGCCGATCATGTCGGTGCGCTCGAGCGACCGCTTCAAG 480
consensus_3265#1      ------------------------------------------------------------
                                                                                  

consensus_3265#0      GCGCAGGTGATCGAGGCGCTGCGCCGTGCCAAGTTCAAGTTCCCCGGCCGCCAGAAGATC 540
consensus_3265#1      ------------------------------------------------------------
                                                                                  

consensus_3265#0      TTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGATCGCGACGTGTACCAGAAGCACAAC 600
consensus_3265#1      ------------------------------------------------------------
                                                                                  

consensus_3265#0      GACGAGGGCCGACTCGTCCCGGACGGATGTGGCGTACAGTTCCGCAACGATCACGGACCG 660
consensus_3265#1      ------------------------------------------------------------
                                                                                  

consensus_3265#0      CTGGTCAAGTGGG 673
consensus_3265#1      -------------