cluster # 3267

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Anopheles gambiae
cluster # 3267 cluster # 3267 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3267#0 length = 810 sequences # 2

consensus_3267#1 length = 285 sequences # 1

consensusID : consensus_3267#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 810
fasta sequence

                              [AAACACACACACACACGAATGATATTCCAAGATGCGTCATTAGATATTATATTACTTTGTTACGCGAACGCTCTAACACAAACACTCTAACACCACAATCATCATGCGAAGGGGGAGCACAACACATCATTATCATCGTACGCTGTAAGAGATATTGTCAATGAAGTTCAAACATTAATCAAAATCATCACATAACGGTTTTCACAACTACAAGAAGTGGAGCGATACAAACTGGTTGGAGCAATGGAGCAATGGAAGCACGCGTGCTACAAACTCGTCTGACGATGTGTGGCTCGTGTTCGCGTATGAAGGATACCTCCCGAAAGAGGAGGGAAGAATAGAGGGTCAGAAAATTGGGAGTGCGTGCGCGTGTTGTTTGCGGTAAACATTCATGCAGAGCAGAGTTAGCGTTCGTTTGCTAAACAACGTGAGAAAAACTTGTACTAATCATTAGCCTGTAGGGAAGGAGAGCCGCGACCGAACCGGACCGAAATCGAAAGTGATGCATCTGCGAGGCGCGAAGAGAGAAGAAGACGCTTGAGATTGAATGAGCAGAGAATGGCTTAACTGGCACGACAGTACAGTAACACCCCCAGAGTACGCTTGTATGTGTTGCGCCTCACACAAGAACAAGGGCCAGTGAAAAACGGAACAGAAGCGGAAAGCGGCAAGAATCAAAATGTGTATTTTTGGCTTTAAAAAACGGTATTATTATTATGATTATTGAAAGTGTAAAGAAAAGCACATACACATACACAGACATTAAATCAAAACGCTACTGCATGTAACGACACTAACGAATTAACTTCT]

[+] EMBL BX615393             [AAACACACACACACACGAATGATATTCCAAGATGCGTCATTAGATATTATATTACTTTGTTACGCGAACGCTCTAACACAAACACTCTAACACCACAATCATCATGCGAAGGGGGAGCACAACACATCATTATCATCGTACGCTGTAAGAGATATTGTCAATGAAGTTCAAACATTAATCAAAATCATCACATAACGGTTTTCACAACTACAAGAAGTGGAGCGATACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX617244             [                                                                 GAACGCTCTAACACAAACACTCTAACACCACAATCATCATGCGAAGGGGGAGCACAACACATCATTATCATCGTACGCTGTAAGAGATATTGTCAATGAAGTTCAAACATTAATCAAAATCATCACATAACGGTTTTCACAACTACAAGAAGTGGAGCGATACAAACTGGTTGGAGCAATGGAGCAATGGAAGCACGCGTGCTACAAACTCGTCTGACGATGTGTGGCTCGTGTTCGCGTATGAAGGATACCTCCCGAAAGAGGAGGGAAGAATAGAGGGTCAGAAAATTGGGAGTGCGTGCGCGTGTTGTTTGCGGTAAACATTCATGCAGAGCAGAGTTAGCGTTCGTTTGCTAAACAACGTGAGAAAAACTTGTACTAATCATTAGCCTGTAGGGAAGGAGAGCCGCGACCGAACCGGACCGAAATCGAAAGTGATGCATCTGCGAGGCGCGAAGAGAGAAGAAGACGCTTGAGATTGAATGAGCAGAGAATGGCTTAACTGGCACGACAGTACAGTAACACCCCCAGAGTACGCTTGTATGTGTTGCGCCTCACACAAGAACAAGGGCCAGTGAAAAACGGAACAGAAGCGGAAAGCGGCAAGAATCAAAATGTGTATTTTTGGCTTTAAAAAACGGTATTATTATTATGATTATTGAAAGTGTAAAGAAAAGCACATACACATACACAGACATTAAATCAAAACGCTACTGCATGTAACGACACTAACGAATTAACTTCT]




>consensus_3267#0
AAACACACACACACACGAATGATATTCCAAGATGCGTCATTAGATATTATATTACTTTGT
TACGCGAACGCTCTAACACAAACACTCTAACACCACAATCATCATGCGAAGGGGGAGCAC
AACACATCATTATCATCGTACGCTGTAAGAGATATTGTCAATGAAGTTCAAACATTAATC
AAAATCATCACATAACGGTTTTCACAACTACAAGAAGTGGAGCGATACAAACTGGTTGGA
GCAATGGAGCAATGGAAGCACGCGTGCTACAAACTCGTCTGACGATGTGTGGCTCGTGTT
CGCGTATGAAGGATACCTCCCGAAAGAGGAGGGAAGAATAGAGGGTCAGAAAATTGGGAG
TGCGTGCGCGTGTTGTTTGCGGTAAACATTCATGCAGAGCAGAGTTAGCGTTCGTTTGCT
AAACAACGTGAGAAAAACTTGTACTAATCATTAGCCTGTAGGGAAGGAGAGCCGCGACCG
AACCGGACCGAAATCGAAAGTGATGCATCTGCGAGGCGCGAAGAGAGAAGAAGACGCTTG
AGATTGAATGAGCAGAGAATGGCTTAACTGGCACGACAGTACAGTAACACCCCCAGAGTA
CGCTTGTATGTGTTGCGCCTCACACAAGAACAAGGGCCAGTGAAAAACGGAACAGAAGCG
GAAAGCGGCAAGAATCAAAATGTGTATTTTTGGCTTTAAAAAACGGTATTATTATTATGA
TTATTGAAAGTGTAAAGAAAAGCACATACACATACACAGACATTAAATCAAAACGCTACT
GCATGTAACGACACTAACGAATTAACTTCT

consensusID : consensus_3267#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence

                              [CCGGCAAAAGCAAATGCAAAAACAGAACAAAACCCCTGTGCGTTATTAATCTCAAAGGCTGAATTTAAACACAAAAAACACACACACGAATGATATTCCAATGCGTTATTAGATATTATATTACTTTGTTACGCGAACGCTCTAACACAACCGCCTAACACCACAATCATCATGCGAAGGGGGGAGCACAACACATTATCATACGTACGCTGTAAAAGATATTGTCATTGTAGTTCAAACATTAATCAAAATCATCACATAACGGTTTTCACAACTACAAGAAGT]

[+] EMBL BM626637             [CCGGCAAAAGCAAATGCAAAAACAGAACAAAACCCCTGTGCGTTATTAATCTCAAAGGCTGAATTTAAACACAAAAAACACACACACGAATGATATTCCAATGCGTTATTAGATATTATATTACTTTGTTACGCGAACGCTCTAACACAACCGCCTAACACCACAATCATCATGCGAAGGGGGGAGCACAACACATTATCATACGTACGCTGTAAAAGATATTGTCATTGTAGTTCAAACATTAATCAAAATCATCACATAACGGTTTTCACAACTACAAGAAGT]




>consensus_3267#1
CCGGCAAAAGCAAATGCAAAAACAGAACAAAACCCCTGTGCGTTATTAATCTCAAAGGCT
GAATTTAAACACAAAAAACACACACACGAATGATATTCCAATGCGTTATTAGATATTATA
TTACTTTGTTACGCGAACGCTCTAACACAACCGCCTAACACCACAATCATCATGCGAAGG
GGGGAGCACAACACATTATCATACGTACGCTGTAAAAGATATTGTCATTGTAGTTCAAAC
ATTAATCAAAATCATCACATAACGGTTTTCACAACTACAAGAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3267#0      ------------------------------------------------------------
consensus_3267#1      CCGGCAAAAGCAAATGCAAAAACAGAACAAAACCCCTGTGCGTTATTAATCTCAAAGGCT 60
                                                                                  

consensus_3267#0      -----------AAACACACACACACACGAATGATATTCCAAGATGCGTCATTAGATATTA 49
consensus_3267#1      GAATTTAAACACAAAAAACACACACACGAATGATATTCCA--ATGCGTTATTAGATATTA 118
                                  ** * ***********************  ****** ***********

consensus_3267#0      TATTACTTTGTTACGCGAACGCTCTAACACAAACACTCTAACACCACAATCATCATGCGA 109
consensus_3267#1      TATTACTTTGTTACGCGAACGCTCTAACACAACCGC-CTAACACCACAATCATCATGCGA 177
                      ******************************** * * ***********************

consensus_3267#0      AGGGGG-AGCACAACACATCATTATCATCGTACGCTGTAAGAGATATTGTCAATGAAGTT 168
consensus_3267#1      AGGGGGGAGCACAACACATTATCAT--ACGTACGCTGTAAAAGATATTGTCATTGTAGTT 235
                      ****** ************ ** **   ************ *********** ** ****

consensus_3267#0      CAAACATTAATCAAAATCATCACATAACGGTTTTCACAACTACAAGAAGTGGAGCGATAC 228
consensus_3267#1      CAAACATTAATCAAAATCATCACATAACGGTTTTCACAACTACAAGAAGT---------- 285
                      **************************************************          

consensus_3267#0      AAACTGGTTGGAGCAATGGAGCAATGGAAGCACGCGTGCTACAAACTCGTCTGACGATGT 288
consensus_3267#1      ------------------------------------------------------------
                                                                                  

consensus_3267#0      GTGGCTCGTGTTCGCGTATGAAGGATACCTCCCGAAAGAGGAGGGAAGAATAGAGGGTCA 348
consensus_3267#1      ------------------------------------------------------------
                                                                                  

consensus_3267#0      GAAAATTGGGAGTGCGTGCGCGTGTTGTTTGCGGTAAACATTCATGCAGAGCAGAGTTAG 408
consensus_3267#1      ------------------------------------------------------------
                                                                                  

consensus_3267#0      CGTTCGTTTGCTAAACAACGTGAGAAAAACTTGTACTAATCATTAGCCTGTAGGGAAGGA 468
consensus_3267#1      ------------------------------------------------------------
                                                                                  

consensus_3267#0      GAGCCGCGACCGAACCGGACCGAAATCGAAAGTGATGCATCTGCGAGGCGCGAAGAGAGA 528
consensus_3267#1      ------------------------------------------------------------
                                                                                  

consensus_3267#0      AGAAGACGCTTGAGATTGAATGAGCAGAGAATGGCTTAACTGGCACGACAGTACAGTAAC 588
consensus_3267#1      ------------------------------------------------------------
                                                                                  

consensus_3267#0      ACCCCCAGAGTACGCTTGTATGTGTTGCGCCTCACACAAGAACAAGGGCCAGTGAAAAAC 648
consensus_3267#1      ------------------------------------------------------------
                                                                                  

consensus_3267#0      GGAACAGAAGCGGAAAGCGGCAAGAATCAAAATGTGTATTTTTGGCTTTAAAAAACGGTA 708
consensus_3267#1      ------------------------------------------------------------
                                                                                  

consensus_3267#0      TTATTATTATGATTATTGAAAGTGTAAAGAAAAGCACATACACATACACAGACATTAAAT 768
consensus_3267#1      ------------------------------------------------------------
                                                                                  

consensus_3267#0      CAAAACGCTACTGCATGTAACGACACTAACGAATTAACTTCT 810
consensus_3267#1      ------------------------------------------