cluster # 3269

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3269 cluster # 3269 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3269#0 length = 899 sequences # 2

consensus_3269#1 length = 663 sequences # 1

consensusID : consensus_3269#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 899
fasta sequence

                              [CTCCGTACTTTGATTACTACAACGCTTCCTTCTACGGATCTGACCGTAGCTTCGCTATCCAGAACTACCCGATCGAAAGCGAATACGCCCGTTACTTCTTCTCCGTCCACCCCGACTTTGACTACTACGAGCGCATGTTCAACTACGCTTACCGCGGAAACTACCATCGTAAGTATACTGGCGGAACATCATCATTATTACACGCTCCAAAAATACCAATAATTGTTTTCTTTCTTCTACAGCATCTTGCGCTGTGTCGAACAAATTCGTCAACACCTTCGATGGAAAGACCTACGACTATGAGCTTGGCAACTGCTGGCATGTTGTGCTGCACACCGTCAAGCCTGACTACTATTTCTACGCCCAGGACTCGCACTTCATGAACTCGGACTACGAATACAACTGGAAGAACGGCTTCGGAGAGGATGAGCAGATCACCATCCTGGCCCGTCACGGCGAGGACAACCAGCTCTTCTTGAAGGCTATCCTTGGCCAGTACAAGCAGAACGACTACAACATCGATATCATCCCCCACGGACACGAGCTCCCGATGGTCTACATCAATGGCAAGCCCCAGCAGATCCACGAGAAGTACGCCGTCGAAATGTACACCAATGATGATGGTGGCGATCAGCCGCTGATCCGCGTCTATGCCCTGCCTGGCAACGAGCTGGAGATCAGCTTCCGCGATGACGACATCAAGATCGTGTTCGACGGATACCGTGCCCGTTTCTTCGCCGACCAGTCGTACTTCAACAACTTCGTCGGTCTTTGCGGTACCAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCGGCTCAGG]

[+] EMBL BX604673             [CTCCGTACTTTGATTACTACAACGCTTCCTTCTACGGATCTGACCGTAGCTTCGCTATCCAGAACTACCCGATCGAAAGCGAATACGCCCGTTACTTCTTCTCCGTCCACCCCGACTTTGACTACTACGAGCGCATGTTCAACTACGCTTACCGCGGAAACTACCATCGTAAGTATACTGGCGGAACATCATCATTATTACACGCTCCAAAAATACCAATAATTGTTTTCTTTCTTCTACAGCATCTTGCGCTGTGTCGAACAAATTCGTCAACACCTTCGATGGAAAGACCTACGACTATGAGCTTGGCAACTGCTGGCATGTTGTGCTGCACACCGTCAAGCCTGACTACTATTTCTACGCCCAGGACTCGCACTTCATGAACTCGGACTACGAATACAACTGGAAGAACGGCTTCGGAGAGGATGAGCAGATCACCATCCTGGCCCGTCACGGCGAGGACAACCAGCTCTTCTTGAAGGCTATCCTTGGCCAGTACAAGCAGAACGACTACAACATCGATATCATCCCCCACGGACACGAGCTCCCGATGGTCTACATCAATGGC                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM595578             [                                                                                                                                                                                                                                         ccgcccacGCGTCCGGCGCTGTGTCGAACAAATTCGTCAACACCTTCGATGGAAAGACCTACGACTATGAGCTTGGCAACTGCTGGCATGTTGTGCTGCACACCGTCAAGCCTGACTACTATTTCTACGCCCAGGACTCGCACTTCATGAACTCGGACTACGAATACAACTGGAAGAACGGCTTCGGAGAGGATGAGCAGATCACCATCCTGGCCCGTCACGGCGAGGACAACCAGCTCTTCTTGAAGGCTATCCTTGGCCAGTACAAGCAGAACGACTACAACATCGATATCATCCCCCACGGACACGAGCTCCCGATGGTCTACATCAATGGCAAGCCCCAGCAGATCCACGAGAAGTACGCCGTCGAAATGTACACCAATGATGATGGTGGCGATCAGCCGCTGATCCGCGTCTATGCCCTGCCTGGCAACGAGCTGGAGATCAGCTTCCGCGATGACGACATCAAGATCGTGTTCGACGGATACCGTGCCCGTTTCTTCGCCGACCAGTCGTACTTCAACAACTTCGTCGGTCTTTGCGGTACCAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCGGCTCAGG]




>consensus_3269#0
CTCCGTACTTTGATTACTACAACGCTTCCTTCTACGGATCTGACCGTAGCTTCGCTATCC
AGAACTACCCGATCGAAAGCGAATACGCCCGTTACTTCTTCTCCGTCCACCCCGACTTTG
ACTACTACGAGCGCATGTTCAACTACGCTTACCGCGGAAACTACCATCGTAAGTATACTG
GCGGAACATCATCATTATTACACGCTCCAAAAATACCAATAATTGTTTTCTTTCTTCTAC
AGCATCTTGCGCTGTGTCGAACAAATTCGTCAACACCTTCGATGGAAAGACCTACGACTA
TGAGCTTGGCAACTGCTGGCATGTTGTGCTGCACACCGTCAAGCCTGACTACTATTTCTA
CGCCCAGGACTCGCACTTCATGAACTCGGACTACGAATACAACTGGAAGAACGGCTTCGG
AGAGGATGAGCAGATCACCATCCTGGCCCGTCACGGCGAGGACAACCAGCTCTTCTTGAA
GGCTATCCTTGGCCAGTACAAGCAGAACGACTACAACATCGATATCATCCCCCACGGACA
CGAGCTCCCGATGGTCTACATCAATGGCAAGCCCCAGCAGATCCACGAGAAGTACGCCGT
CGAAATGTACACCAATGATGATGGTGGCGATCAGCCGCTGATCCGCGTCTATGCCCTGCC
TGGCAACGAGCTGGAGATCAGCTTCCGCGATGACGACATCAAGATCGTGTTCGACGGATA
CCGTGCCCGTTTCTTCGCCGACCAGTCGTACTTCAACAACTTCGTCGGTCTTTGCGGTAC
CAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCC
TGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCGGCTCAGG

consensusID : consensus_3269#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 663
fasta sequence

                              [CCGCCCACGCGTCCGTCCGTTCTCTGGCAAGCAGTTCCAGATGTGCTTCTCGGCCACCAACCAGTACCCGAACATGCCCAAGCTCAACTTCCTCAATGTTCTCAACTTTGACAAGGTCGGAAGCATGAACTGGGAGCTGGCATACGGTGAGAAGTGCCAGGGAGGATCGCACGTCTCGATGAAGGGTAAGCTGATCCAGTCGGAGCCCTACCGCCACTTCCTGCGTATCTCCGAGGCTGGCCAGAGCTGCAAGCAGCAGATGGACCAGGGATACTTCCAACTGCCCGCATGTCAAAACGCCACTCGCCAGGCCGGATACTTCGATCAGTACTCGTTCAACTTTGAGTACAAGGATGTCTCGAACTATGCAAAGAACCTGACCTACCAGTTCTTCGACTACGCTCGTTACTTCACCTTCCCGTACTGGAACGAGGACTACTTCTTCCAGGGCAAGCACAACCAGTTCCAGATCGACTTCCAGCTGGCTCCGTACTTTGATTACTACAACGCTTCCTTCTACGGATCTGACCGTAGCTTCGCTATCCAGAACTACCCGATCGAAAGCGAATACGCCCGTTACTTCTTCTCCGTCCACCCCGACTTTGACTACTACGAGCGCATGTTCAACTACGCTTACCGCGGAAACTACCATCCATCTTGCGC]

[+] EMBL BM588880             [CCGCCCACGCGTCCGTCCGTTCTCTGGCAAGCAGTTCCAGATGTGCTTCTCGGCCACCAACCAGTACCCGAACATGCCCAAGCTCAACTTCCTCAATGTTCTCAACTTTGACAAGGTCGGAAGCATGAACTGGGAGCTGGCATACGGTGAGAAGTGCCAGGGAGGATCGCACGTCTCGATGAAGGGTAAGCTGATCCAGTCGGAGCCCTACCGCCACTTCCTGCGTATCTCCGAGGCTGGCCAGAGCTGCAAGCAGCAGATGGACCAGGGATACTTCCAACTGCCCGCATGTCAAAACGCCACTCGCCAGGCCGGATACTTCGATCAGTACTCGTTCAACTTTGAGTACAAGGATGTCTCGAACTATGCAAAGAACCTGACCTACCAGTTCTTCGACTACGCTCGTTACTTCACCTTCCCGTACTGGAACGAGGACTACTTCTTCCAGGGCAAGCACAACCAGTTCCAGATCGACTTCCAGCTGGCTCCGTACTTTGATTACTACAACGCTTCCTTCTACGGATCTGACCGTAGCTTCGCTATCCAGAACTACCCGATCGAAAGCGAATACGCCCGTTACTTCTTCTCCGTCCACCCCGACTTTGACTACTACGAGCGCATGTTCAACTACGCTTACCGCGGAAACTACCATCCATCTTGCGC]




>consensus_3269#1
CCGCCCACGCGTCCGTCCGTTCTCTGGCAAGCAGTTCCAGATGTGCTTCTCGGCCACCAA
CCAGTACCCGAACATGCCCAAGCTCAACTTCCTCAATGTTCTCAACTTTGACAAGGTCGG
AAGCATGAACTGGGAGCTGGCATACGGTGAGAAGTGCCAGGGAGGATCGCACGTCTCGAT
GAAGGGTAAGCTGATCCAGTCGGAGCCCTACCGCCACTTCCTGCGTATCTCCGAGGCTGG
CCAGAGCTGCAAGCAGCAGATGGACCAGGGATACTTCCAACTGCCCGCATGTCAAAACGC
CACTCGCCAGGCCGGATACTTCGATCAGTACTCGTTCAACTTTGAGTACAAGGATGTCTC
GAACTATGCAAAGAACCTGACCTACCAGTTCTTCGACTACGCTCGTTACTTCACCTTCCC
GTACTGGAACGAGGACTACTTCTTCCAGGGCAAGCACAACCAGTTCCAGATCGACTTCCA
GCTGGCTCCGTACTTTGATTACTACAACGCTTCCTTCTACGGATCTGACCGTAGCTTCGC
TATCCAGAACTACCCGATCGAAAGCGAATACGCCCGTTACTTCTTCTCCGTCCACCCCGA
CTTTGACTACTACGAGCGCATGTTCAACTACGCTTACCGCGGAAACTACCATCCATCTTG
CGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3269#0      CTCCGTACTTTGATTACTACAACGCTTCCTTCTACGGATCTGACCGTAGCTTCGCTATCC 60
consensus_3269#1      ---------------------------CCGCCCACGCGTCCGTCCGT----TCTCTGGCA 29
                                                 **  * ***  ** * ****    ** **  * 

consensus_3269#0      AGAACTACCCGATCGAAAGCGAATACGCCCGTTACTTCTTCTCCGTCCACCCCGACTTTG 120
consensus_3269#1      AGCAGTTCCAGAT---GTGCTTCTCGGCCACCAACCAGTACCCGAACATGCCCAAGCTCA 86
                      ** * * ** ***     **   *  ***    **   * * *   *   *** *  *  

consensus_3269#0      ACTACTACGAG---CGCATGTTCAACTACGCTTACCGCGGAAACTACCATCGTAAGTATA 177
consensus_3269#1      ACTTCCTCAATGTTCTCAACTTTGACAAGGTCGGAAGCATGAACTGGGAGCTGGCATACG 146
                      *** *  * *    * **  **  ** * *      **   ****   * *     **  

consensus_3269#0      CTGGCGGAACATCATC-ATTATTACACGCTCCAA--AAATACCAATAATTGTTTTCTTTC 234
consensus_3269#1      GTGA-GAAGTGCCAGGGAGGATCGCACGTCTCGATGAAGGGTAAGCTGATCCAGTCGGAG 205
                       **  * *    **   *  **  ****   * *  **     *     *    **    

consensus_3269#0      TTCTACAGCATCTTGCGCTGTGTCGAACAAATTCGTCAACACCTTCGATGGAAAGACCTA 294
consensus_3269#1      CCCTACCGCCACTTCCTGCGTATCTCCGAGGCTGGCCAG-AGCTGCAAGCAGCAGATGGA 264
                        **** **  *** *   ** **    *   * * **  * ** * *     ***   *

consensus_3269#0      CGACTATGAGCTTGGCAACTGCTGGCATGTTGTGCTGCACACCGTCAAGCCTGACTACTA 354
consensus_3269#1      CCA--GGGATACTTCCAACTGCCCGCATGTCAAAACGCCACTCGCCAGGCCGGA------ 316
                      * *    **   *  *******  ******      **    ** ** *** **      

consensus_3269#0      TTTCTACGCCCAGGACTCGCACTTCATGAACTCGGACTACGAATACAACTGGAAGAACGG 414
consensus_3269#1      -TACTTCGATCAGTACTCGTTC------AACTTTGAGTACAAGGATGTCTCGAACTATGC 369
                       * ** **  *** *****  *      ****  ** *** *  *   ** ***  * * 

consensus_3269#0      CTTCGGAGAGGATGAGCAGATCACCATCCTGGCCCGTCACGGCGAGGACAACCAGCTCTT 474
consensus_3269#1      AAAGAACCTGACCTACCAGTTCTTCGACTACGCTCGTTACTTCAC---CTTCCCGTACTG 426
                               *    * *** **  *  *   ** *** **  *     *  ** *  ** 

consensus_3269#0      CTTGAAGGCTATCCTTGGCCAGTACAAGCAGAACGACTACAACATCGATATCATCCCCCA 534
consensus_3269#1      GAACGAGGACTACTTCTTCCAGGGCAAGCACAACCAGTTCCAGATCGACTTC-----CAG 481
                           ***    * *   ****  ****** *** * * * * *****  **     *  

consensus_3269#0      CGGACACGAGCTCCCGATGGTCTACATCAATGGCAAGCCCCAGCAGATCC-ACGAGAAGT 593
consensus_3269#1      CTGGCTCCGTACTTTGAT----TACTACAACG-CTTCCTTCTACGGATCTGACCGTAGCT 536
                      * * * *        ***    ***  *** * *   *  *  * ****  **   *  *

consensus_3269#0      ACGCCGTCGAAATGTACACCAATGATGATGGTGGCGATCAGCCGCTGATCCGCGTCTATG 653
consensus_3269#1      TCGCTATCCAGAACTACCCGATCGAAAGCGAATACGCCCGTTACTTCTTCTCCGTCCACC 596
                       ***  ** * *  *** * *  **    *    **  *      *  **  **** *  

consensus_3269#0      CCCTGCCTGGCAACGAGCTGGAGATCAGCTTCCGCGATGACGACATCAAGATCGTGTTCG 713
consensus_3269#1      CCGACTTTGACTACTAC---GAGCGCATGTTCAACTACGCTTACCGCGGAAAC---TACC 650
                      **     ** * ** *    ***  **  ***  * * *   **  *   * *   * * 

consensus_3269#0      ACGGATACCGTGCCCGTTTCTTCGCCGACCAGTCGTACTTCAACAACTTCGTCGGTCTTT 773
consensus_3269#1      ATCCATCTTGCGC----------------------------------------------- 663
                      *   **   * **                                               

consensus_3269#0      GCGGTACCAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGC 833
consensus_3269#1      ------------------------------------------------------------
                                                                                  

consensus_3269#0      GCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCGG 893
consensus_3269#1      ------------------------------------------------------------
                                                                                  

consensus_3269#0      CTCAGG 899
consensus_3269#1      ------