cluster # 3270

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Anopheles gambiae
cluster # 3270 cluster # 3270 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3270#0 length = 821 sequences # 2

consensus_3270#1 length = 542 sequences # 1

consensusID : consensus_3270#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 821
fasta sequence

                              [CCGGTCGATGGTTGCCTCGATCGCCGCTGCTGGTAAAGTGTGTGAAAGGCGGCAACCGAAGTGTGTATACGGCGGCTGCTGCTACGTGTACGTTGCCGTCATTCGCTGTGTGTGCCGTGAACACCACCTGAGCCAGTTGGACAAGTCTTCTCTGTCCCTTTTTGGTGCATGAAAGTGCGTGGTGTACCAGCACGCTTTTACTCAGAAGCCGGAAGTGGTGTCGTTTTGTGCATTTCGAAAAAAAGAGTGTACACTGCAGTGACGTGATACGATCAACAGAAAAACATGATTAGAAAATCGCCCACAACTGTGTATGGTGGTGCGAATCTTTATCGAAATCTCACCGCGCTTTCCACCAGCAACGGCACCCAGCAGAGGCGCGAGTGAAAGCAAACAACTAGAAGAGCTTGGCCGAGCCATTTCTCCGTGTGAATTCCAGAGCCCCCTCCCTCCCCATTTCCAATTGAATTAAGGCCCAGCGGGTCAAAAATTTATCACATTATACACATCGAAGTAAGCGCAACTTTTCGTGTATTTTCGACGCGTTGCTGCCATTTCTTCTAAAGCCCCCGGGTAGTACGGCTCTGCTTGGCTGTGAAGTAAAAGGTGATAAAAATGGAAGGAATGCGATTTTGCTACGGATCGGCCGTCCGGTGGCGTGGAACAATGAGGATTCTAGCCAGCGTACTGCTGGTGGTGGTGGCGGTTTTAGATAAAGCAGCAACTCAGAAACCGGAAGACGGTCCATACCGGAGGAAATACATTGGCAAATTTAACTCCTATCACCATCAAGCATCGGGTGACGTATACGCCGTTGATGA]

[+] EMBL BM657023             [CCGGTCGATGGTTGCCTCGATCGCCGCTGCTGGTAAAGTGTGTGAAAGGCGGCAACCGAAGTGTGTATACGGCGGCTGCTGCTACGTGTACGTTGCCGTCATTCGCTGTGTGTGCCGTGAACACCACCTGAGCCAGTTGGACAAGTCTTCTCTGTCCCTTTTTGGTGCATGAAAGTGCGTGGTGTACCAGCACGCTTTTACTCAGAAGCCGGAAGTGGTGTCGTTTTGTGCATTTCGAAAAAAAGAGTGTACACTGCAGTGACGTGATACGATCAACAGAAAAACATGATTAGAAAATCGCCCACAACTGTGTATGGTGGTGCGAATCTTTATCGAAATCTCACCGCGCTTTCCACCAGCAACGGCACCCAGCAGAGGCGCGAGTGAAAGCAAACAACTAGAAGAGCTTGGCCGAGCCATTTCTCCGTGTGAATTCCAGAGCCCCCTCCCTCCCCATTTCCAATTGAATTAAGGCCCAGCGGGTCAAAAATTTATCACATTATACACATCGAAGTAAGCGCAACTTTTCGTGTATTTTCGACGCGTTGCTGCCATTTCTTCTAAAGCCCCCGGGTAGTACGGCTCTGCTTGGCTGTGAAGTAAAAGGTGATAAAAATGGAAGGAATGCGATTTTGCTACGGATCGGCCGTCCGGTGGCGTGGA                                                                                                                                                              ]
[+] EMBL BM627594             [                                                                                                                                                          ccgCTTTTTGGTGCATGAAAGTGCGTGGTGTACCAGCACGCTTTTACTCAGAAGCCGGAAGTGGTGTCGTTTTGTGCATTTCGAAAAAAAGAGTGTACACTGCAGTGACGTGATACGATCAACAGAAAAACATGATTAGAAAATCGCCCACAACTGTGTATGGTGGTGCGAATCTTTATCGAAATCTCACCGCGCTTTCCACCAGCAACGGCACCCAGCAGAGGCGCGAGTGAAAGCAAACAACTAGAAGAGCTTGGCCGAGCCATTTCTCCGTGTGAATTCCAGAGCCCCCTCCCTCCCCATTTCCAATTGAATTAAGGCCCAGCGGGTCAAAAATTTATCACATTATACACATCGAAGTAAGCGCAACTTTTCGTGTATTTTCGACGCGTTGCTGCCATTTCTTCTAAAGCCCCCGGGTAGTAGGGCTCTGCTTGGCTGTGAAGTAAAAGGTGATAAAAATGGAAGGAATGCGATTTTGCTACGGATCGGCCGTCCGGTGGCGTGGAACAATGAGGATTCTAGCCAGCGTACTGCTGGTGGTGGTGGCGGTTTTAGATAAAGCAGCAACTCAGAAACCGGAAGACGGTCCATACCGGAGGAAATACATTGGCAAATTTAACTCCTATCACCATCAAGCATCGGGTGACGTATACGCCGTTGATGA]




>consensus_3270#0
CCGGTCGATGGTTGCCTCGATCGCCGCTGCTGGTAAAGTGTGTGAAAGGCGGCAACCGAA
GTGTGTATACGGCGGCTGCTGCTACGTGTACGTTGCCGTCATTCGCTGTGTGTGCCGTGA
ACACCACCTGAGCCAGTTGGACAAGTCTTCTCTGTCCCTTTTTGGTGCATGAAAGTGCGT
GGTGTACCAGCACGCTTTTACTCAGAAGCCGGAAGTGGTGTCGTTTTGTGCATTTCGAAA
AAAAGAGTGTACACTGCAGTGACGTGATACGATCAACAGAAAAACATGATTAGAAAATCG
CCCACAACTGTGTATGGTGGTGCGAATCTTTATCGAAATCTCACCGCGCTTTCCACCAGC
AACGGCACCCAGCAGAGGCGCGAGTGAAAGCAAACAACTAGAAGAGCTTGGCCGAGCCAT
TTCTCCGTGTGAATTCCAGAGCCCCCTCCCTCCCCATTTCCAATTGAATTAAGGCCCAGC
GGGTCAAAAATTTATCACATTATACACATCGAAGTAAGCGCAACTTTTCGTGTATTTTCG
ACGCGTTGCTGCCATTTCTTCTAAAGCCCCCGGGTAGTACGGCTCTGCTTGGCTGTGAAG
TAAAAGGTGATAAAAATGGAAGGAATGCGATTTTGCTACGGATCGGCCGTCCGGTGGCGT
GGAACAATGAGGATTCTAGCCAGCGTACTGCTGGTGGTGGTGGCGGTTTTAGATAAAGCA
GCAACTCAGAAACCGGAAGACGGTCCATACCGGAGGAAATACATTGGCAAATTTAACTCC
TATCACCATCAAGCATCGGGTGACGTATACGCCGTTGATGA

consensusID : consensus_3270#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 542
fasta sequence

                              [CGACCCACGCGTCCGACGGCACCCAGCAGAGGCGCGAGTGAAAGCAAACAACTAGAAGAGCTTGGCCGAGCCATTTCTCCGTGTGAATTCCAGAGCCCCCTCCCTCCCCATTTCCAATTGAATTAAGGCCCAGCGGGTCAAAAATTTATCACATTATACACATCGAAGTAAGCGCAACTTTTCGTGTATTTTCGACGCGTTGCTGCCATTTCTTCTAAAGCCCCCGGGTAGTAGGGCTCTGCTTGGCTGTGAAGTAAAAGGTGATAAAAATGGAAGGAATGCGATTTTGCTACGGATCGGCCGTCCGGTGGCGTGGAACAATGAGGATTCTAGCCAGCGTACTGCTGGTGGTGGTGGCGGTTTTAGATAAAGCAGCAACTCAGAAACCGGAAGACGGTCCATACCGGGGGAAATACATTGGCAAATTTAACTCCTATCACCATCAAGCATCGGGGTGACGTATACGCCGTTGATGAATACACATTCCTGCTAACCGGCTTCAACTACGACGGCAATGGAATCGACACGTTCTTCTGGTCCGG]

[+] EMBL BM626592             [CGACCCACGCGTCCGACGGCACCCAGCAGAGGCGCGAGTGAAAGCAAACAACTAGAAGAGCTTGGCCGAGCCATTTCTCCGTGTGAATTCCAGAGCCCCCTCCCTCCCCATTTCCAATTGAATTAAGGCCCAGCGGGTCAAAAATTTATCACATTATACACATCGAAGTAAGCGCAACTTTTCGTGTATTTTCGACGCGTTGCTGCCATTTCTTCTAAAGCCCCCGGGTAGTAGGGCTCTGCTTGGCTGTGAAGTAAAAGGTGATAAAAATGGAAGGAATGCGATTTTGCTACGGATCGGCCGTCCGGTGGCGTGGAACAATGAGGATTCTAGCCAGCGTACTGCTGGTGGTGGTGGCGGTTTTAGATAAAGCAGCAACTCAGAAACCGGAAGACGGTCCATACCGGGGGAAATACATTGGCAAATTTAACTCCTATCACCATCAAGCATCGGGGTGACGTATACGCCGTTGATGAATACACATTCCTGCTAACCGGCTTCAACTACGACGGCAATGGAATCGACACGTTCTTCTGGTCCGG]




>consensus_3270#1
CGACCCACGCGTCCGACGGCACCCAGCAGAGGCGCGAGTGAAAGCAAACAACTAGAAGAG
CTTGGCCGAGCCATTTCTCCGTGTGAATTCCAGAGCCCCCTCCCTCCCCATTTCCAATTG
AATTAAGGCCCAGCGGGTCAAAAATTTATCACATTATACACATCGAAGTAAGCGCAACTT
TTCGTGTATTTTCGACGCGTTGCTGCCATTTCTTCTAAAGCCCCCGGGTAGTAGGGCTCT
GCTTGGCTGTGAAGTAAAAGGTGATAAAAATGGAAGGAATGCGATTTTGCTACGGATCGG
CCGTCCGGTGGCGTGGAACAATGAGGATTCTAGCCAGCGTACTGCTGGTGGTGGTGGCGG
TTTTAGATAAAGCAGCAACTCAGAAACCGGAAGACGGTCCATACCGGGGGAAATACATTG
GCAAATTTAACTCCTATCACCATCAAGCATCGGGGTGACGTATACGCCGTTGATGAATAC
ACATTCCTGCTAACCGGCTTCAACTACGACGGCAATGGAATCGACACGTTCTTCTGGTCC
GG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3270#0      CCGGTCGATGGTTGCCTCGATCGCCGCTGCTGGTAAAGTGTGTGAAAGGCGGCAACCGAA 60
consensus_3270#1      ------------------------------------------------------------
                                                                                  

consensus_3270#0      GTGTGTATACGGCGGCTGCTGCTACGTGTACGTTGCCGTCATTCGCTGTGTGTGCCGTGA 120
consensus_3270#1      ------------------------------------------------------------
                                                                                  

consensus_3270#0      ACACCACCTGAGCCAGTTGGACAAGTCTTCTCTGTCCCTTTTTGGTGCATGAAAGTGCGT 180
consensus_3270#1      ------------------------------------------------------------
                                                                                  

consensus_3270#0      GGTGTACCAGCACGCTTTTACTCAGAAGCCGGAAGTGGTGTCGTTTTGTGCATTTCGAAA 240
consensus_3270#1      ------------------------------------------------------------
                                                                                  

consensus_3270#0      AAAAGAGTGTACACTGCAGTGACGTGATACGATCAACAGAAAAACATGATTAGAAAATCG 300
consensus_3270#1      ------------------------------------------------------------
                                                                                  

consensus_3270#0      CCCACAACTGTGTATGGTGGTGCGAATCTTTATCGAAATCTCACCGCGCTTTCCACCAGC 360
consensus_3270#1      ----------------------------------------------CGACCCACGCGTCC 14
                                                                    **     * *   *

consensus_3270#0      AACGGCACCCAGCAGAGGCGCGAGTGAAAGCAAACAACTAGAAGAGCTTGGCCGAGCCAT 420
consensus_3270#1      GACGGCACCCAGCAGAGGCGCGAGTGAAAGCAAACAACTAGAAGAGCTTGGCCGAGCCAT 74
                       ***********************************************************

consensus_3270#0      TTCTCCGTGTGAATTCCAGAGCCCCCTCCCTCCCCATTTCCAATTGAATTAAGGCCCAGC 480
consensus_3270#1      TTCTCCGTGTGAATTCCAGAGCCCCCTCCCTCCCCATTTCCAATTGAATTAAGGCCCAGC 134
                      ************************************************************

consensus_3270#0      GGGTCAAAAATTTATCACATTATACACATCGAAGTAAGCGCAACTTTTCGTGTATTTTCG 540
consensus_3270#1      GGGTCAAAAATTTATCACATTATACACATCGAAGTAAGCGCAACTTTTCGTGTATTTTCG 194
                      ************************************************************

consensus_3270#0      ACGCGTTGCTGCCATTTCTTCTAAAGCCCCCGGGTAGTACGGCTCTGCTTGGCTGTGAAG 600
consensus_3270#1      ACGCGTTGCTGCCATTTCTTCTAAAGCCCCCGGGTAGTAGGGCTCTGCTTGGCTGTGAAG 254
                      *************************************** ********************

consensus_3270#0      TAAAAGGTGATAAAAATGGAAGGAATGCGATTTTGCTACGGATCGGCCGTCCGGTGGCGT 660
consensus_3270#1      TAAAAGGTGATAAAAATGGAAGGAATGCGATTTTGCTACGGATCGGCCGTCCGGTGGCGT 314
                      ************************************************************

consensus_3270#0      GGAACAATGAGGATTCTAGCCAGCGTACTGCTGGTGGTGGTGGCGGTTTTAGATAAAGCA 720
consensus_3270#1      GGAACAATGAGGATTCTAGCCAGCGTACTGCTGGTGGTGGTGGCGGTTTTAGATAAAGCA 374
                      ************************************************************

consensus_3270#0      GCAACTCAGAAACCGGAAGACGGTCCATACCGGAGGAAATACATTGGCAAATTTAACTCC 780
consensus_3270#1      GCAACTCAGAAACCGGAAGACGGTCCATACCGGGGGAAATACATTGGCAAATTTAACTCC 434
                      ********************************* **************************

consensus_3270#0      TATCACCATCAAGCATCGGG-TGACGTATACGCCGTTGATGA------------------ 821
consensus_3270#1      TATCACCATCAAGCATCGGGGTGACGTATACGCCGTTGATGAATACACATTCCTGCTAAC 494
                      ******************** *********************                  

consensus_3270#0      ------------------------------------------------
consensus_3270#1      CGGCTTCAACTACGACGGCAATGGAATCGACACGTTCTTCTGGTCCGG 542