cluster # 329

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Anopheles gambiae
cluster # 329 cluster # 329 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_329#0 length = 779 sequences # 1

consensus_329#1 length = 311 sequences # 1

consensusID : consensus_329#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 779
fasta sequence

                              [AGATCGACCGCCGGAACGGGCAACACCTGTTGCGTTATTTCGGAAACGCTATAAAACACTCGCGATCGCAGGTAACGCGCTGCAGTTCTGCAGGGAATAGCCGCTGTGTCGTGTAATCGGAACATCAGCTTCAGCCTGTTTTGGGTGTAATGGCGCGATTCGTGCAAGTGCTTGCCCTGGTGGCCTTCGCGGCGAGCGCTTTGGGACAGGACGCGTCCAGCGAAGCCAGCACCGTGTCTCCCCAAGCTATCTTCGATCTCTCCGAGGATGACTTCAAACTCTGGATCTCCGGACGGCAACCGAAGGCCTGGGAAGGAGAAGCTTCTTCAAGCGGCACTACAACAACCCCAGCAAGCACTCCGAGAACGACAACGCCCGCATCCGTTTTCCGAACGACATCCACCTCGACGACACCTGCTCCATCAAGCATCCTGACCACTACGACCTCCACCACCACTACCAGCCCCTTCGATAGTTTCCCTCCGTCCGATGGAAAGTCCTGGTTTGAGGAGGAGGAAGGCGACACGGCGACACCCCGCCCGGACGTGCTCGGCGAACAGTTCAAACCGGCCGGCGAAGACTTTGCCCAGTGGCTCGAGCGTCAGATGAACCGTGTGCAGGAGGTGACGTTCGTTCCACAGACGACCTTGACGGGGGATCAGCTGTCGGGAGCGGGGCTCGTCACCCGTTTGACAACCAACCGAAACCGGATTCCCGCTACCACCTTCCAGCCGGTGACGGACTACGTCCCAGTAACCACAACCCCACCACCACCACCA]

[+] EMBL BX613313             [AGATCGACCGCCGGAACGGGCAACACCTGTTGCGTTATTTCGGAAACGCTATAAAACACTCGCGATCGCAGGTAACGCGCTGCAGTTCTGCAGGGAATAGCCGCTGTGTCGTGTAATCGGAACATCAGCTTCAGCCTGTTTTGGGTGTAATGGCGCGATTCGTGCAAGTGCTTGCCCTGGTGGCCTTCGCGGCGAGCGCTTTGGGACAGGACGCGTCCAGCGAAGCCAGCACCGTGTCTCCCCAAGCTATCTTCGATCTCTCCGAGGATGACTTCAAACTCTGGATCTCCGGACGGCAACCGAAGGCCTGGGAAGGAGAAGCTTCTTCAAGCGGCACTACAACAACCCCAGCAAGCACTCCGAGAACGACAACGCCCGCATCCGTTTTCCGAACGACATCCACCTCGACGACACCTGCTCCATCAAGCATCCTGACCACTACGACCTCCACCACCACTACCAGCCCCTTCGATAGTTTCCCTCCGTCCGATGGAAAGTCCTGGTTTGAGGAGGAGGAAGGCGACACGGCGACACCCCGCCCGGACGTGCTCGGCGAACAGTTCAAACCGGCCGGCGAAGACTTTGCCCAGTGGCTCGAGCGTCAGATGAACCGTGTGCAGGAGGTGACGTTCGTTCCACAGACGACCTTGACGGGGGATCAGCTGTCGGGAGCGGGGCTCGTCACCCGTTTGACAACCAACCGAAACCGGATTCCCGCTACCACCTTCCAGCCGGTGACGGACTACGTCCCAGTAACCACAACCCCACCACCACCACCA]




>consensus_329#0
AGATCGACCGCCGGAACGGGCAACACCTGTTGCGTTATTTCGGAAACGCTATAAAACACT
CGCGATCGCAGGTAACGCGCTGCAGTTCTGCAGGGAATAGCCGCTGTGTCGTGTAATCGG
AACATCAGCTTCAGCCTGTTTTGGGTGTAATGGCGCGATTCGTGCAAGTGCTTGCCCTGG
TGGCCTTCGCGGCGAGCGCTTTGGGACAGGACGCGTCCAGCGAAGCCAGCACCGTGTCTC
CCCAAGCTATCTTCGATCTCTCCGAGGATGACTTCAAACTCTGGATCTCCGGACGGCAAC
CGAAGGCCTGGGAAGGAGAAGCTTCTTCAAGCGGCACTACAACAACCCCAGCAAGCACTC
CGAGAACGACAACGCCCGCATCCGTTTTCCGAACGACATCCACCTCGACGACACCTGCTC
CATCAAGCATCCTGACCACTACGACCTCCACCACCACTACCAGCCCCTTCGATAGTTTCC
CTCCGTCCGATGGAAAGTCCTGGTTTGAGGAGGAGGAAGGCGACACGGCGACACCCCGCC
CGGACGTGCTCGGCGAACAGTTCAAACCGGCCGGCGAAGACTTTGCCCAGTGGCTCGAGC
GTCAGATGAACCGTGTGCAGGAGGTGACGTTCGTTCCACAGACGACCTTGACGGGGGATC
AGCTGTCGGGAGCGGGGCTCGTCACCCGTTTGACAACCAACCGAAACCGGATTCCCGCTA
CCACCTTCCAGCCGGTGACGGACTACGTCCCAGTAACCACAACCCCACCACCACCACCA

consensusID : consensus_329#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [ATCCACTGTNCGTACGACACCTGCTCCACCATAGCTTCTCATANACCACCACAACCTCCACCACCGCCAGCCCCTTTGATACTTTCCCTCCGCCCGATGGAAAGTCCTGGTTTGAGGAGGAGGAATGCGACACGGCGACACCCCGCCCGGACGTGCTCGGTGAACAGTTCAAACCGGCCGGCGAAGACTTTGCCCAGTGGCTCGAGCGTCAGATGAACCGTGTGCAGGAGGTGACGTTCGTTCCGCAGACGACCTTGACGGGGGATCAGCTGCCGGGAGCAGGGCTCGTCACCCGTTTGACAACCAACCGA]

[+] EMBL BX619202             [ATCCACTGTNCGTACGACACCTGCTCCACCATAGCTTCTCATANACCACCACAACCTCCACCACCGCCAGCCCCTTTGATACTTTCCCTCCGCCCGATGGAAAGTCCTGGTTTGAGGAGGAGGAATGCGACACGGCGACACCCCGCCCGGACGTGCTCGGTGAACAGTTCAAACCGGCCGGCGAAGACTTTGCCCAGTGGCTCGAGCGTCAGATGAACCGTGTGCAGGAGGTGACGTTCGTTCCGCAGACGACCTTGACGGGGGATCAGCTGCCGGGAGCAGGGCTCGTCACCCGTTTGACAACCAACCGA]




>consensus_329#1
ATCCACTGTNCGTACGACACCTGCTCCACCATAGCTTCTCATANACCACCACAACCTCCA
CCACCGCCAGCCCCTTTGATACTTTCCCTCCGCCCGATGGAAAGTCCTGGTTTGAGGAGG
AGGAATGCGACACGGCGACACCCCGCCCGGACGTGCTCGGTGAACAGTTCAAACCGGCCG
GCGAAGACTTTGCCCAGTGGCTCGAGCGTCAGATGAACCGTGTGCAGGAGGTGACGTTCG
TTCCGCAGACGACCTTGACGGGGGATCAGCTGCCGGGAGCAGGGCTCGTCACCCGTTTGA
CAACCAACCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_329#0      AGATCGACCGCCGGAACGGGCAACACCTGTTGCGTTATTTCGGAAACGCTATAAAACACT 60
consensus_329#1      ------------------------------------------------------------
                                                                                 

consensus_329#0      CGCGATCGCAGGTAACGCGCTGCAGTTCTGCAGGGAATAGCCGCTGTGTCGTGTAATCGG 120
consensus_329#1      ------------------------------------------------------------
                                                                                 

consensus_329#0      AACATCAGCTTCAGCCTGTTTTGGGTGTAATGGCGCGATTCGTGCAAGTGCTTGCCCTGG 180
consensus_329#1      ------------------------------------------------------------
                                                                                 

consensus_329#0      TGGCCTTCGCGGCGAGCGCTTTGGGACAGGACGCGTCCAGCGAAGCCAGCACCGTGTCTC 240
consensus_329#1      ------------------------------------------------------------
                                                                                 

consensus_329#0      CCCAAGCTATCTTCGATCTCTCCGAGGATGACTTCAAACTCTGGATCTCCGGACGGCAAC 300
consensus_329#1      ------------------------------------------------------------
                                                                                 

consensus_329#0      CGAAGGCCTGGGAAGGAGAAGCTTCTTCAAGCGGCACTACAACAACCCCAGCAAGCACTC 360
consensus_329#1      ------------------------------------------------------------
                                                                                 

consensus_329#0      CGAGAACGACAACGCCCGCATCCGTTTTCCGAACGACATCCACCTCGACGACACCTGCTC 420
consensus_329#1      ----------------------------------ATCCACTGTNCGTACGACACCTGCTC 26
                                                         *  *       *************

consensus_329#0      CATCA-AGCATCCTGACCACTACGACCTCCACCACCACTACCAGCCCCTTCGATAGTTTC 479
consensus_329#1      CACCATAGCTTCTCATANACCACCACAACCTCCACCACCGCCAGCCCCTTTGATACTTTC 86
                     ** ** *** **      ** ** **  ** *******  ********** **** ****

consensus_329#0      CCTCCGTCCGATGGAAAGTCCTGGTTTGAGGAGGAGGAAGGCGACACGGCGACACCCCGC 539
consensus_329#1      CCTCCGCCCGATGGAAAGTCCTGGTTTGAGGAGGAGGAATGCGACACGGCGACACCCCGC 146
                     ****** ******************************** ********************

consensus_329#0      CCGGACGTGCTCGGCGAACAGTTCAAACCGGCCGGCGAAGACTTTGCCCAGTGGCTCGAG 599
consensus_329#1      CCGGACGTGCTCGGTGAACAGTTCAAACCGGCCGGCGAAGACTTTGCCCAGTGGCTCGAG 206
                     ************** *********************************************

consensus_329#0      CGTCAGATGAACCGTGTGCAGGAGGTGACGTTCGTTCCACAGACGACCTTGACGGGGGAT 659
consensus_329#1      CGTCAGATGAACCGTGTGCAGGAGGTGACGTTCGTTCCGCAGACGACCTTGACGGGGGAT 266
                     ************************************** *********************

consensus_329#0      CAGCTGTCGGGAGCGGGGCTCGTCACCCGTTTGACAACCAACCGAAACCGGATTCCCGCT 719
consensus_329#1      CAGCTGCCGGGAGCAGGGCTCGTCACCCGTTTGACAACCAACCGA--------------- 311
                     ****** ******* ******************************               

consensus_329#0      ACCACCTTCCAGCCGGTGACGGACTACGTCCCAGTAACCACAACCCCACCACCACCACCA 779
consensus_329#1      ------------------------------------------------------------