cluster # 330

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Anopheles gambiae
cluster # 330 cluster # 330 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_330#0 length = 787 sequences # 1

consensus_330#1 length = 673 sequences # 1

consensusID : consensus_330#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 787
fasta sequence

                              [AAATTACACACACACATAAATAAAAAAAACGATATACGCTTGAAGAAGAATGCCACACTATTTGTCGCGCGGTGCATTCATTCTAAAAACCCAAAAGTTAAATAACGAACAAGAAAAAAAAAAACAAAACAAAACAAACAAAAAGAATGCATAATTAAAGGTCAAAACAAAGAGGAGCGAAAATAAATACAACAACAAAACAAAACAAAACATATAACATCACGTAGCAAGTAAGCAACATGATCAATGTTAGTCCTATGAGGTAAAGGGGAGAGGATAGTAAAAGTAACACACAAACACACACACAAAAAAGAAAGACAAGACAGCAAATCAGCAAACCTTAGAGCAGCGAAGCAACCGAGAATAGAAATGGGACGGGGTACGATGGGAGTGTAGAACCCATCAATTAACGATTGTATGGCGCACTATGTATGGACAGTGTTCTATTGCTTGTGTGACGTGTTTGCGTGATGCTACCCGGTTTTGAGTTTTTTTCCTCTAGAACGAGAACAGAAAAAAAACGAAACGAACGTAACGTTGTGTTCCTGCTTCACTGTTCGGGGTGAATAATACACCGCTTTGCCCTCTCCTCCCATATTTCTTGTGCCGTTAGCGTTGAACAGAAGGGTGGAAGTATGACTAGTTTAGCTGCCATTTATTCTATTTCCGAATTGGGATTGTTCGTGATCTGTTGAAGAGCGTTCGCTTCCGATAGAGGGAANGGACAAACAAATAATGGAAGCAACNGGGAAAGTTTGTTTGATTGGTACATTTCGAGTTCGCAACC]

[+] EMBL BX621095             [AAATTACACACACACATAAATAAAAAAAACGATATACGCTTGAAGAAGAATGCCACACTATTTGTCGCGCGGTGCATTCATTCTAAAAACCCAAAAGTTAAATAACGAACAAGAAAAAAAAAAACAAAACAAAACAAACAAAAAGAATGCATAATTAAAGGTCAAAACAAAGAGGAGCGAAAATAAATACAACAACAAAACAAAACAAAACATATAACATCACGTAGCAAGTAAGCAACATGATCAATGTTAGTCCTATGAGGTAAAGGGGAGAGGATAGTAAAAGTAACACACAAACACACACACAAAAAAGAAAGACAAGACAGCAAATCAGCAAACCTTAGAGCAGCGAAGCAACCGAGAATAGAAATGGGACGGGGTACGATGGGAGTGTAGAACCCATCAATTAACGATTGTATGGCGCACTATGTATGGACAGTGTTCTATTGCTTGTGTGACGTGTTTGCGTGATGCTACCCGGTTTTGAGTTTTTTTCCTCTAGAACGAGAACAGAAAAAAAACGAAACGAACGTAACGTTGTGTTCCTGCTTCACTGTTCGGGGTGAATAATACACCGCTTTGCCCTCTCCTCCCATATTTCTTGTGCCGTTAGCGTTGAACAGAAGGGTGGAAGTATGACTAGTTTAGCTGCCATTTATTCTATTTCCGAATTGGGATTGTTCGTGATCTGTTGAAGAGCGTTCGCTTCCGATAGAGGGAANGGACAAACAAATAATGGAAGCAACNGGGAAAGTTTGTTTGATTGGTACATTTCGAGTTCGCAACC]




>consensus_330#0
AAATTACACACACACATAAATAAAAAAAACGATATACGCTTGAAGAAGAATGCCACACTA
TTTGTCGCGCGGTGCATTCATTCTAAAAACCCAAAAGTTAAATAACGAACAAGAAAAAAA
AAAACAAAACAAAACAAACAAAAAGAATGCATAATTAAAGGTCAAAACAAAGAGGAGCGA
AAATAAATACAACAACAAAACAAAACAAAACATATAACATCACGTAGCAAGTAAGCAACA
TGATCAATGTTAGTCCTATGAGGTAAAGGGGAGAGGATAGTAAAAGTAACACACAAACAC
ACACACAAAAAAGAAAGACAAGACAGCAAATCAGCAAACCTTAGAGCAGCGAAGCAACCG
AGAATAGAAATGGGACGGGGTACGATGGGAGTGTAGAACCCATCAATTAACGATTGTATG
GCGCACTATGTATGGACAGTGTTCTATTGCTTGTGTGACGTGTTTGCGTGATGCTACCCG
GTTTTGAGTTTTTTTCCTCTAGAACGAGAACAGAAAAAAAACGAAACGAACGTAACGTTG
TGTTCCTGCTTCACTGTTCGGGGTGAATAATACACCGCTTTGCCCTCTCCTCCCATATTT
CTTGTGCCGTTAGCGTTGAACAGAAGGGTGGAAGTATGACTAGTTTAGCTGCCATTTATT
CTATTTCCGAATTGGGATTGTTCGTGATCTGTTGAAGAGCGTTCGCTTCCGATAGAGGGA
ANGGACAAACAAATAATGGAAGCAACNGGGAAAGTTTGTTTGATTGGTACATTTCGAGTT
CGCAACC

consensusID : consensus_330#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGACGTGTTTGCGTGATGCTACCCGGTTTTGAGTTTTTTTCCTCTAGAACGAGAACAGAAAAAAAACGAAACGAACGTAACGTTGTGTTCCTGCTTCACTGTTCGGGGTGAATAATACACCGCTTTGCCCTCTCCTCCCATATTTCTTGTGCCGTTAGCGTTGAAAAGAAGCGTGGAGGTATGACTAGTTTTGCTGCCATTTATTCTATTTCCGAATTGGGATTGTTCGTTATCTGTTGAAGAGCGTTCGCTTCCGATAGAGGGAAGGGACAAACAAATAATGGAAGCAACGGGGAAAGTTTGTTTGATTGTTACATTTCGAGTTCGCAACCACTACCATTAAAGTCTAACGTTAAGGTGTTGAAGTTAAGATTAATAATAGGATCGAATCGACAAAAAAAAAAAAAAACAAAGATAACAAACTAAATAAAAGCAACATAAAAGTAACACAATAGCGAAGAAAGAACTTAAGCGTTGCGTTAGGGTGGATTATAAAGGAATGAAAGGATAAGCAGAATGATGGGAAGCAACAAAAAACACAGAAAGAAAAACAAAACAGAATGGAAATGAGAAGAAAGCGCTGAGAAGTTGTTGCATTGGTTGGTAGTTTTTTTTGAAGCGCA]

[+] EMBL BM625741             [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGACGTGTTTGCGTGATGCTACCCGGTTTTGAGTTTTTTTCCTCTAGAACGAGAACAGAAAAAAAACGAAACGAACGTAACGTTGTGTTCCTGCTTCACTGTTCGGGGTGAATAATACACCGCTTTGCCCTCTCCTCCCATATTTCTTGTGCCGTTAGCGTTGAAAAGAAGCGTGGAGGTATGACTAGTTTTGCTGCCATTTATTCTATTTCCGAATTGGGATTGTTCGTTATCTGTTGAAGAGCGTTCGCTTCCGATAGAGGGAAGGGACAAACAAATAATGGAAGCAACGGGGAAAGTTTGTTTGATTGTTACATTTCGAGTTCGCAACCACTACCATTAAAGTCTAACGTTAAGGTGTTGAAGTTAAGATTAATAATAGGATCGAATCGACAAAAAAAAAAAAAAACAAAGATAACAAACTAAATAAAAGCAACATAAAAGTAACACAATAGCGAAGAAAGAACTTAAGCGTTGCGTTAGGGTGGATTATAAAGGAATGAAAGGATAAGCAGAATGATGGGAAGCAACAAAAAACACAGAAAGAAAAACAAAACAGAATGGAAATGAGAAGAAAGCGCTGAGAAGTTGTTGCATTGGTTGGTAGTTTTTTTTGAAGCGCA]




>consensus_330#1
CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGACGTGTTT
GCGTGATGCTACCCGGTTTTGAGTTTTTTTCCTCTAGAACGAGAACAGAAAAAAAACGAA
ACGAACGTAACGTTGTGTTCCTGCTTCACTGTTCGGGGTGAATAATACACCGCTTTGCCC
TCTCCTCCCATATTTCTTGTGCCGTTAGCGTTGAAAAGAAGCGTGGAGGTATGACTAGTT
TTGCTGCCATTTATTCTATTTCCGAATTGGGATTGTTCGTTATCTGTTGAAGAGCGTTCG
CTTCCGATAGAGGGAAGGGACAAACAAATAATGGAAGCAACGGGGAAAGTTTGTTTGATT
GTTACATTTCGAGTTCGCAACCACTACCATTAAAGTCTAACGTTAAGGTGTTGAAGTTAA
GATTAATAATAGGATCGAATCGACAAAAAAAAAAAAAAACAAAGATAACAAACTAAATAA
AAGCAACATAAAAGTAACACAATAGCGAAGAAAGAACTTAAGCGTTGCGTTAGGGTGGAT
TATAAAGGAATGAAAGGATAAGCAGAATGATGGGAAGCAACAAAAAACACAGAAAGAAAA
ACAAAACAGAATGGAAATGAGAAGAAAGCGCTGAGAAGTTGTTGCATTGGTTGGTAGTTT
TTTTTGAAGCGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_330#0      AAATTACACACACACATAAATAAAAAAAACGATATACGCTTGAAGAAGAATGCCACACTA 60
consensus_330#1      ------------------------------------------------------------
                                                                                 

consensus_330#0      TTTGTCGCGCGGTGCATTCATTCTAAAAACCCAAAAGTTAAATAACGAACAAGAAAAAAA 120
consensus_330#1      ------------------------------------------------------------
                                                                                 

consensus_330#0      AAAACAAAACAAAACAAACAAAAAGAATGCATAATTAAAGGTCAAAACAAAGAGGAGCGA 180
consensus_330#1      ------------------------------------------------------------
                                                                                 

consensus_330#0      AAATAAATACAACAACAAAACAAAACAAAACATATAACATCACGTAGCAAGTAAGCAACA 240
consensus_330#1      ------------------------------------------------------------
                                                                                 

consensus_330#0      TGATCAATGTTAGTCCTATGAGGTAAAGGGGAGAGGATAGTAAAAGTAACACACAAACAC 300
consensus_330#1      ------------------------------------------------------------
                                                                                 

consensus_330#0      ACACACAAAAAAGAAAGACAAGACAGCAAATCAGCAAACCTTAGAGCAGCGAAGCAACCG 360
consensus_330#1      ------------------------------------------------------------
                                                                                 

consensus_330#0      AGAATAGAAATGGGACGGGGTACGATGGGAGTGTAGAACCCATCAATTAACGATTGTATG 420
consensus_330#1      -----------------------------------------------CCGCGGACGCGTG 13
                                                                       **   *  **

consensus_330#0      G-CGCAC-TATGTATGGACA-GTGTTCTATTGCTTGTGTGACGTGTTTGCGTGATGCTAC 477
consensus_330#1      GGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTG-GGGACGTGTTTGCGTGATGCTAC 72
                     * ** **   **   ****  ***  *    ** ** * *********************

consensus_330#0      CCGGTTTTGAGTTTTTTTCCTCTAGAACGAGAACAGAAAAAAAACGAAACGAACGTAACG 537
consensus_330#1      CCGGTTTTGAGTTTTTTTCCTCTAGAACGAGAACAGAAAAAAAACGAAACGAACGTAACG 132
                     ************************************************************

consensus_330#0      TTGTGTTCCTGCTTCACTGTTCGGGGTGAATAATACACCGCTTTGCCCTCTCCTCCCATA 597
consensus_330#1      TTGTGTTCCTGCTTCACTGTTCGGGGTGAATAATACACCGCTTTGCCCTCTCCTCCCATA 192
                     ************************************************************

consensus_330#0      TTTCTTGTGCCGTTAGCGTTGAACAGAAGGGTGGAAGTATGACTAGTTTAGCTGCCATTT 657
consensus_330#1      TTTCTTGTGCCGTTAGCGTTGAAAAGAAGCGTGGAGGTATGACTAGTTTTGCTGCCATTT 252
                     *********************** ***** ***** ************* **********

consensus_330#0      ATTCTATTTCCGAATTGGGATTGTTCGTGATCTGTTGAAGAGCGTTCGCTTCCGATAGAG 717
consensus_330#1      ATTCTATTTCCGAATTGGGATTGTTCGTTATCTGTTGAAGAGCGTTCGCTTCCGATAGAG 312
                     **************************** *******************************

consensus_330#0      GGAANGGACAAACAAATAATGGAAGCAACNGGGAAAGTTTGTTTGATTGGTACATTTCGA 777
consensus_330#1      GGAAGGGACAAACAAATAATGGAAGCAACGGGGAAAGTTTGTTTGATTGTTACATTTCGA 372
                     **** ************************ ******************* **********

consensus_330#0      GTTCGCAACC-------------------------------------------------- 787
consensus_330#1      GTTCGCAACCACTACCATTAAAGTCTAACGTTAAGGTGTTGAAGTTAAGATTAATAATAG 432
                     **********                                                  

consensus_330#0      ------------------------------------------------------------
consensus_330#1      GATCGAATCGACAAAAAAAAAAAAAAACAAAGATAACAAACTAAATAAAAGCAACATAAA 492
                                                                                 

consensus_330#0      ------------------------------------------------------------
consensus_330#1      AGTAACACAATAGCGAAGAAAGAACTTAAGCGTTGCGTTAGGGTGGATTATAAAGGAATG 552
                                                                                 

consensus_330#0      ------------------------------------------------------------
consensus_330#1      AAAGGATAAGCAGAATGATGGGAAGCAACAAAAAACACAGAAAGAAAAACAAAACAGAAT 612
                                                                                 

consensus_330#0      ------------------------------------------------------------
consensus_330#1      GGAAATGAGAAGAAAGCGCTGAGAAGTTGTTGCATTGGTTGGTAGTTTTTTTTGAAGCGC 672
                                                                                 

consensus_330#0      -
consensus_330#1      A 673