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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3302#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 832 fasta sequence
[TTGTCACCAAACATCGAGGATATTTGCTGCAAACACTCGGTGACAAGGAAGTGCATGACTGGTTGTATGCAATCAATCCCCTGCTGGCCGGGCAAATTAGGTCTCGATTGGCCAGGAAAAACATTTCCAGCATAAGCAGCACTGGAAGTGGTGCAGGCGATCAGCAACAGGCGACGACGGGAGCGTCCGCACTGGCTGTAGCGGCCGCCCAGGGCAACGGAGGTGGCAGCAGTTCTGGAGGCAAATGAGATACAATAACGATGGAGTCCGTTCTAGTATACTAAACTACTGCGCAACGGCTACTCCTATACTGTCGCAGAATGTAGAGCGACCATAAACCATTACCACCATTATTCCTAGAAAGGATGATCCAAGTTTGACGTGATGCAATCGCCACCACCAAGAAAACCAAAATCAAACCAAAATAATTAGTAGTACTCGTTGTCGTTAACTCCTCCTCCCTCCTTCCCTCTCTCCACTTAGTTGTGTTGGTAGGTTTCGGTTTCGAGTTAAGAAATTCAACATCACAAATAAGGAAGAAGAAAACACGCAGCCAGACAAACTATGTCACGGTATGTGTCAAGAACATGTGAAGTTAGTTAGAAGAAGCGAGAACGGCATGAGTGTACGTCAGATGATGATGATGTTTTGGAGTGCGTGGCAGTTTGGCTTGAGATGATGATGGCGAGAAGGAAACGGCATGTGTGTGTGTGTGGGCCAAGAGCAATCGAAATATGATAGTGGGAGCGATGTGCAAGGCAGAGGACACCTACATAATACTTTCCGTTGGGCGAATCCTAAAAGAAAACATGGGAAAGATATTAATCAATTG]
[+] EMBL BX607960 [TTGTCACCAAACATCGAGGATATTTGCTGCAAACACTCGGTGACAAGGAAGTGCATGACTGGTTGTATGCAATCAATCCCCTGCTGGCCGGGCAAATTAGGTCTCGATTGGCCAGGAAAAACATTTCCAGCATAAGCAGCACTGGAAGTGGTGCAGGCGATCAGCAACAGGCGACGACGGGAGCGTCCGCACTGGCTGTAGCGGCCGCCCAGGGCAACGGAGGTGGCAGCAGTTCTGGAGGCAAATGAGATACAATAACGATGGAGTCCGTTCTAGTATACTAAACTACTGCGCAACGGCTACTCCTATACTGTCGCAGAATGTAGAGCGACCATAAACCATTACCACCATTATTCCTAGAAAGGATGATCCAAGTTTGACGTGATGCAATCGCCACCACCAAGAAAACC ]
[+] EMBL BM633134 [ ccgctAGTTCTGGAGGCAAATGAGATACAATAACGATGGAGTCCGTTCTAGTATACTAAACTACTGCGCAACGGCTACTCCTATACTGTCGCAGAATGTAGAGCGACCATAAACCATGACCACCATTATTCCTAGAAAGGATGATCCAAGTTTGACGTGATGCAATCGCCACCACCAAGAATACCAAAATCAAACCAAAATAATTAGTAGTACTCGTTGTCGTTAACTCCTCCTCCCTCCTTCCCTCTCTCCACTTAGTTGTGTTGGTAGGTTTCGGTTTCGAGTTAAGAAATTCAACATCACAAATAAGGAAGAAGAAAACACGCAGCCAGACAAACTATGTCACGGTATGTGTCAAGAACATGTGAAGTTAGTTAGAAGAAGCGAGAACGGCATGAGTGTACGTCAGATGATGATGATGTTTTGGAGTGCGTGGCAGTTTGGCTTGAGATGATGATGGCGAGAAGGAAACGGCATGTGTGTGTGTGTGGGCCAAGAGCAATCGAAATATGATAGTGGGAGCGATGTGCAAGGCAGAGGACACCTACATAATACTTTCCGTTGGGCGAATCCTAAAAGAAAACATGGGAAAGATATTAATCAATTG]
consensusID : consensus_3302#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[CCGCACAAATAAGGAAGAAGAAAACACGCAGCCAGACAAACTATGTCACGGTATGTGTCAAGAACATGTGAAGTTAGTTAGAAGAAGCGAGAACGGCATGAGTGTACGTCAGATGATGATGATGTTTTGGAGTGCGTGGCAGGTTAGTTGATTATAGTTTCCTTTAGCACTTCTCATTAGTTGATAGTTTAATTTGTGAACGGTTCTTTTAAGAGCCGGCGTAATTTTACTTTATCGAAAAAGGATACTGCTTAACGCTACATGTAAGATAGCATGTTTTGTATATATACAAAAGAAAAGGAAAACTATTTTTATCGCACATAAAGCTAGAGGATCATTTTATCCGCGTGTTCAGTTGCCTGTTTTGGAGCAAAGTTTATTTATCGTTTCACATGTGATCGGTATGTGTATCACGAACGATACGGAGGGGGTTTATGGTTAGATCGCACTCAGGCAGGGTCTGGTGCTGTTTGCCGATTTTTTTTTTATTCTACAGAATTTTCTCTAGAGAGACTGCAATAAGGCTTACAAACTAGAAAGATAGAACGGGCAATGGGGAGGAGCAGCGAAGCTGTAACCTAACGCATTGCCCTAGCGAAACCGCAAGAACCGACCACTTGGCTGTCGTGCTTGCGTAACGTTGTGGTACGAATTGTTGCTACATTTAAATATCTGATTTACT]
[+] EMBL BM624941 [CCGCACAAATAAGGAAGAAGAAAACACGCAGCCAGACAAACTATGTCACGGTATGTGTCAAGAACATGTGAAGTTAGTTAGAAGAAGCGAGAACGGCATGAGTGTACGTCAGATGATGATGATGTTTTGGAGTGCGTGGCAGGTTAGTTGATTATAGTTTCCTTTAGCACTTCTCATTAGTTGATAGTTTAATTTGTGAACGGTTCTTTTAAGAGCCGGCGTAATTTTACTTTATCGAAAAAGGATACTGCTTAACGCTACATGTAAGATAGCATGTTTTGTATATATACAAAAGAAAAGGAAAACTATTTTTATCGCACATAAAGCTAGAGGATCATTTTATCCGCGTGTTCAGTTGCCTGTTTTGGAGCAAAGTTTATTTATCGTTTCACATGTGATCGGTATGTGTATCACGAACGATACGGAGGGGGTTTATGGTTAGATCGCACTCAGGCAGGGTCTGGTGCTGTTTGCCGATTTTTTTTTTATTCTACAGAATTTTCTCTAGAGAGACTGCAATAAGGCTTACAAACTAGAAAGATAGAACGGGCAATGGGGAGGAGCAGCGAAGCTGTAACCTAACGCATTGCCCTAGCGAAACCGCAAGAACCGACCACTTGGCTGTCGTGCTTGCGTAACGTTGTGGTACGAATTGTTGCTACATTTAAATATCTGATTTACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3302#0 TTGTCACCAAACATCGAGGATATTTGCTGCAAACACTCGGTGACAAGGAAGTGCATGACT 60
consensus_3302#1 ------------------------------------------------------------
consensus_3302#0 GGTTGTATGCAATCAATCCCCTGCTGGCCGGGCAAATTAGGTCTCGATTGGCCAGGAAAA 120
consensus_3302#1 ------------------CCGCACAAATAAGGAAGAAGAAAACACG--CAGCCAGACAAA 40
** * ** * * * * ** ***** ***
consensus_3302#0 ACATTTCCAGCATAAGCAGCACTGGAAGTGGTGCAGGCGATCAGCAACAGGCGACGACGG 180
consensus_3302#1 CTATGTCACG-GTATGTGTCA--AGAACATGTGAAGTTAGTTAG-AAGAAGCGAGAACGG 96
** ** * ** * ** *** *** ** * ** ** * **** ****
consensus_3302#0 GA-GCGTCCGCACTGGCTGTAGCGGCCGCCCAGGGCAACGGAGGTGGCAGCAGTTCTGGA 239
consensus_3302#1 CATGAGTGTACGTCAGATGATGATGATGTTTTGGA----GTGCGTGGCAG----GTTAGT 148
* * ** * * ** * * * ** * ******* * *
consensus_3302#0 GGCAAATGAGATACAATAACGATGGAGTCCGTTCTAGTATACTAAACTACTGCGCAACGG 299
consensus_3302#1 TGATTATAGTTTCCTTTAGC-----ACTTCTCATTAGT-TGATAGTTTAATTTGTGAACG 202
* ** * * ** * * * * **** * ** ** * * * *
consensus_3302#0 CTACTCCTATACTGTCGCAGAATGTAGAGCGACCATAAACCATTACCACCATTATTCCTA 359
consensus_3302#1 GTTCTTTTAAGAGCCGGCGTAATTTTACTTTATCGAAAAAGGATACTGC--TTAACGCTA 260
* ** ** ** *** * * * *** *** * *** ***
consensus_3302#0 GAAAGGATGATCCAAGTTTGACGTG-ATGCAATCGCCACCACCAAGAAAACCAAAATCAA 418
consensus_3302#1 CATGTAAGATAGCATGTTTTGTATATATACAAAAGAAA-----AGGAAAACTATTTTTAT 315
* * ** **** * ** *** * * * ****** * * *
consensus_3302#0 ACCAAAATAATTAGTAGTACTCGTTGTCGTTAACTCCTCCTCCCTCCTTCCCTCTCTCCA 478
consensus_3302#1 CGCACATAAAGCTAGAGGA-TCATT----TTATCCGCGTGTTCAGTTGCCTGTTTTGGAG 370
** * ** ** * ** ** *** * * * * * * *
consensus_3302#0 CTTAGTTGTGTTGGTAGGTTTCGGTTTCGAGTTAAGAAATTCAACATCACAAATAAGGAA 538
consensus_3302#1 CAAAGTT-TATTTATCG-TTTCACATGTGA-TCGGTATGT---GTATCACGAACGAT-AC 423
* **** * ** * * **** * ** * * * ***** ** * *
consensus_3302#0 GAAGAAAACACGCAGCCAGA-CAAACTATGTCACGGTATGTGTCAAGAACATGTGAAGTT 597
consensus_3302#1 GGAGGGGGTTTATGGTTAGATCGCACTCAGGCAGGGTCTG-GTGCTGTTTGC-CGATTTT 481
* ** * *** * *** * ** *** ** ** * ** **
consensus_3302#0 AGTTAGAAGAAGCGAGAACGGCATGAGTGTACGTCAGATGATGATGATGTTTTGGAGTGC 657
consensus_3302#1 TTTTTTATTCTACAGAATTTTCTCTAGAG------AGACTGCAATAAGGCTTACAAAC-- 533
** * * * * ** * *** ** * * ** *
consensus_3302#0 GTGGCAGTTTGGCTTGAGATGATGATGGCGAGAAGGAAACGGCATGTGTGTGTGTGTGGG 717
consensus_3302#1 -TAGAAAGATAGAACG-GGCAATGGGGAGGAGCAGCGAA-GCTGTAACCTAACGCATTGC 590
* * * * * * * *** * *** ** ** * * * * *
consensus_3302#0 CCAAGAGCAATCGAAATATGATAGTGGGAGCGATGTGCAAGGCAGAGGACACCTACATAA 777
consensus_3302#1 CCTAGCGAAACCGCAA----------GAACCGAC-CACTTGGCTGTCG-TGCTTGCGTAA 638
** ** * ** ** ** * * *** * *** * * * * * ***
consensus_3302#0 TACTTTCCGTTGGGCGAATCCTAAAAGAAAACATGGGAAAGATATTAATCAATTG 832
consensus_3302#1 CGTTGTGGTACGAATTGTTGCTACATTTAAATATCTGATTTACT----------- 682
* * * * *** * *** ** ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||