cluster # 3305

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Anopheles gambiae
cluster # 3305 cluster # 3305 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3305#0 length = 837 sequences # 2

consensus_3305#1 length = 464 sequences # 1

consensusID : consensus_3305#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 837
fasta sequence

                              [GGTGCATTGTTTTCCTGCCCGAAAAATAGCGCAACAACAGTGAAACGGCCCCGCTAACCGTGCGCTTTCCCTCCCCAACAGATGGCTGATAAGGCTAAGAGTGCCCTGCAGGCAGTGAAAAAGCCGGCCGTTGCCAAACCGGCGGCCCCGAAGATGCGAAGCGAAGGAGGCCGGCGCGAAGAAGGTGAAGCGGCTGCCCGTGGTGCCGGAATCGTGGCTGAAGATTGCCAAGTGCAAGCGCGGCTGCAAACCGAATGTGCTGCTCCAGCGCCGCAAGCTGCGCGCCGTGCGGCTGCTGCGCCGCAAGCAGAACCTGCTCCGCGCCATGAACTACGAGAAGAAGTATCTGAAGACGGAGCGTGCCGTCGTGGAGCAGGCCCGCATTGCCAAGGAGAAGGGCAACATCTACATCCCGGCCGAGCCGAA-GTGGCGTTTGTCATCCGTATCCGTGGTATCAACAAGGTTGCCCC-GAAGTGCGCAAGGTGCTGCAGCTGTTCCGTCTGCGCCAGATCAACAACGGCACGTTCATCAAGCTGAACACGCCGACCGGGGCCTGGCGCAAGAAGAACAACCACTACGTCGAGGGCGGCGACTTCGGCAACCGCGAGGACAAGATCAACGAGCTGATCCAGCGTATGGTTTAAGTTTTCCCCGTAAAACACACTGCGCGTCCATCCTGGTTTGTCCGTGCCTGGCGGCGAACAGCGGCCGCCTCACCGGGTGTGGGTAGGGGCAGATTTGTGGAAAGTTTTTTTTTAGGTTGGTGTGTGTGTGTCCATCGAGATAAGTGGAATAAAAGTGAAGAGAAAAGCCTCGAGGTGAAAAATCCAAAAAAAA]

[+] EMBL CNS09NDE             [GGTGCATTGTTTTCCTGCCCGAAAAATAGCGCAACAACAGTGAAACGGCCCCGCTAACCGTGCGCTTTCCCTCCCCAACAGATGGCTGATAAGGCTAAGAGTGCCCTGCAGGCAGTGAAAAAGCCGGCCGTTGCCAAACCGGCGGCCCCGAAGATGCGAAGCGAAGGAGGCCGGCGCGAAGAAGGTGAAGCGGCTGCCCGTGGTGCCGGAATCGTGGCTGAAGATTGCCAAGTGCAAGCGCGGCTGCAAACCGAATGTGCTGCTCCAGCGCCGCAAGCTGCGCGCCGTGCGGCTGCTGCGCCGCAAGCAGAACCTGCTCCGCGCCATGAACTACGAGAAGAAGTATCTGAAGACGGAGCGTGCCGTCGTGGAGCAGGCCCGCATTGCCAAGGAGAAGGGCAACATCTACATCCCGGCCGAGCCGAA GTGGCGTTTGTCATCCGTATCCGTGGTATCAACAAGGTTGCCCC GAAGTGCGCAAGGTGCTGCAGCTGTTCCGTCTGCGCCAGATCAACAACGGCACGTTCATCAAGCTGAACACGCCGACCGGGGCCTGGCGCAAGAAGAACAACCACTACGTCGAGGGCGGCGACTTCGGCAACCGCGAGGACAAGATCAACGAGCTGATCCAGCGTATGGTTTAAGTTTTCCCCGTAAAACACACTGCGCGTCCATCCTGGTTTGTCCGTGCCTGGCGGCGAACAGCGGCCGCCTCACCGGGTGTGGGTAGGGGCAGATTTGTGGAAAGTTTTTTTTTAGGTTGGTGTGTGTGTGTCCATCGAGATAAGTGGAATAAAAGTGAAGAGAAAAGCCTCGAGGTGAAAAATCCAAAAAAAA]
[-] EMBL CNS09NDF             [                                                                                                                                                                                                                                                                                               TGCGGCTG TGCGCCGCAAGCAGGACCT CTCCGCGCCATGAACTACGAGAAGAAGTATCTGAAGACGGAGCGTGCCGTCGTGGGGGAGGCCCGCATTGCCAAGGAGAAGGGCAACATCTACATCCCGGCCGAGCCGAAGGTGGCGTTTGTCATCCGTATCCGTGGTATCAACAAGGTTGCCCCGGAGGTGCGCAAGGTGCTGCAGCTGTTCCGTCTGCGCCAGGTCAACAACGGCACGTTCATCAAGCTGGACACGCCGACCGGCG GTGGCGCAAGAAGAACAACCACTACGTCGAGGGCGGCGACTTCGGCAACCGCGAGGACAAGATCAACGAGCTGATCCAGCGTATGGTTTAAGTTTTCCCCGTAAAACACACTGCGCGTCCATCCTGGTCTGTCCGT CCTGGCGGCGAACAGCGGCCGCCTCACCGGGTGTGGGTAGGGGCAGATTTGTGGAAAGTTTTTTTTTAGGTTGGTGTGTGTGTGTGCATCGAGATAAGTGGAATAAACGTGAAGAGc                              ]




>consensus_3305#0
GGTGCATTGTTTTCCTGCCCGAAAAATAGCGCAACAACAGTGAAACGGCCCCGCTAACCG
TGCGCTTTCCCTCCCCAACAGATGGCTGATAAGGCTAAGAGTGCCCTGCAGGCAGTGAAA
AAGCCGGCCGTTGCCAAACCGGCGGCCCCGAAGATGCGAAGCGAAGGAGGCCGGCGCGAA
GAAGGTGAAGCGGCTGCCCGTGGTGCCGGAATCGTGGCTGAAGATTGCCAAGTGCAAGCG
CGGCTGCAAACCGAATGTGCTGCTCCAGCGCCGCAAGCTGCGCGCCGTGCGGCTGCTGCG
CCGCAAGCAGAACCTGCTCCGCGCCATGAACTACGAGAAGAAGTATCTGAAGACGGAGCG
TGCCGTCGTGGAGCAGGCCCGCATTGCCAAGGAGAAGGGCAACATCTACATCCCGGCCGA
GCCGAAGTGGCGTTTGTCATCCGTATCCGTGGTATCAACAAGGTTGCCCCGAAGTGCGCA
AGGTGCTGCAGCTGTTCCGTCTGCGCCAGATCAACAACGGCACGTTCATCAAGCTGAACA
CGCCGACCGGGGCCTGGCGCAAGAAGAACAACCACTACGTCGAGGGCGGCGACTTCGGCA
ACCGCGAGGACAAGATCAACGAGCTGATCCAGCGTATGGTTTAAGTTTTCCCCGTAAAAC
ACACTGCGCGTCCATCCTGGTTTGTCCGTGCCTGGCGGCGAACAGCGGCCGCCTCACCGG
GTGTGGGTAGGGGCAGATTTGTGGAAAGTTTTTTTTTAGGTTGGTGTGTGTGTGTCCATC
GAGATAAGTGGAATAAAAGTGAAGAGAAAAGCCTCGAGGTGAAAAATCCAAAAAAAA

consensusID : consensus_3305#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [CCGCCCACGCGTCCGAGCAAATCAGACACTCAAAAGCAAGGCATGGCACGCGGGGCGGTATGATGATTTGATTTTTTTATTGGACAGAGAAGAGTTTCACACGCACACACCAACACACACACAATACAGTCCTGCAAATTGGGACTGCACTGTGGGACCCCACATCCAACCACAGACGCAGGCTCCCTTTTTCGCATGGCCCCCGACAACAACACCACCCCAGTGTGTGCTAATTAATTTACCCACATAATAAGGGATGACGATTATAGGAAAAAGAAAAGAAAAGAAAAACAAACGTGTGCGTGGGGTTAAGTTAACGTTTTCTTCTTCATCTTCTGATGGGATGGCTATAAGTTGGAATTTACAATTACAGCAAATAGAGAAGAATCCGACGCCACGACGCCGCCGCCGCTGTGCTTAAACTAACGGCGGGGCTCTAACGTCGCGAAACAAAAACTCTATAT]

[+] EMBL BM609064             [CCGCCCACGCGTCCGAGCAAATCAGACACTCAAAAGCAAGGCATGGCACGCGGGGCGGTATGATGATTTGATTTTTTTATTGGACAGAGAAGAGTTTCACACGCACACACCAACACACACACAATACAGTCCTGCAAATTGGGACTGCACTGTGGGACCCCACATCCAACCACAGACGCAGGCTCCCTTTTTCGCATGGCCCCCGACAACAACACCACCCCAGTGTGTGCTAATTAATTTACCCACATAATAAGGGATGACGATTATAGGAAAAAGAAAAGAAAAGAAAAACAAACGTGTGCGTGGGGTTAAGTTAACGTTTTCTTCTTCATCTTCTGATGGGATGGCTATAAGTTGGAATTTACAATTACAGCAAATAGAGAAGAATCCGACGCCACGACGCCGCCGCCGCTGTGCTTAAACTAACGGCGGGGCTCTAACGTCGCGAAACAAAAACTCTATAT]




>consensus_3305#1
CCGCCCACGCGTCCGAGCAAATCAGACACTCAAAAGCAAGGCATGGCACGCGGGGCGGTA
TGATGATTTGATTTTTTTATTGGACAGAGAAGAGTTTCACACGCACACACCAACACACAC
ACAATACAGTCCTGCAAATTGGGACTGCACTGTGGGACCCCACATCCAACCACAGACGCA
GGCTCCCTTTTTCGCATGGCCCCCGACAACAACACCACCCCAGTGTGTGCTAATTAATTT
ACCCACATAATAAGGGATGACGATTATAGGAAAAAGAAAAGAAAAGAAAAACAAACGTGT
GCGTGGGGTTAAGTTAACGTTTTCTTCTTCATCTTCTGATGGGATGGCTATAAGTTGGAA
TTTACAATTACAGCAAATAGAGAAGAATCCGACGCCACGACGCCGCCGCCGCTGTGCTTA
AACTAACGGCGGGGCTCTAACGTCGCGAAACAAAAACTCTATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3305#0      GGTGCATTGTTTTCCTGCCCGAAAAATAGCGCAACAACAGTGAAACGGCCCCGCTAACCG 60
consensus_3305#1      ------------------------------------------------------------
                                                                                  

consensus_3305#0      TGCGCTTTCCCTCCCCAACAGATGGCTGATAAGGCTAAGAGTGCCCTGCAGGCAGTGAAA 120
consensus_3305#1      ----------------------CCGCCCACGCGTCCGAGCAAATC----AGACACTCAAA 34
                                              **  *   * *  **     *    ** ** * ***

consensus_3305#0      AAGCCGGCCGTTGCCAAACCGGCGGCCCCGAAGATGCGAAGCGAAGGAGGCCGGCGCGAA 180
consensus_3305#1      AGCAAGGC--ATGGCACGCGGGGCGGTATGATGATTTGATTTTTTTA----TTGGACAGA 88
                      *    ***   ** **  * **  *    ** ***  **              *  *  *

consensus_3305#0      GAAGGTGAAGCGGCTGCCCGTGGTGCCGGAATCGTGGCTGAAGATTGCCAAGTGCAAGCG 240
consensus_3305#1      GAAGA-GTTTCACACGCACACACCAACACACACACAATACAGTCCTGCAAATTGGGACTG 147
                      ****  *   *    ** *       *  *  *       *    *** ** **  *  *

consensus_3305#0      CGGCTGCAAACCGAATGTGCTGCTCCAGCGCCGCAAGCTGCGCGCCGTGCGGCTGCTGCG 300
consensus_3305#1      CACTGTGGGACCCCACATCCAACCACAG--ACGCAGGCTCCCTTTTTCGCA--TG----G 199
                      *        ***  *  * *  *  ***   **** *** *       **   **    *

consensus_3305#0      CCGCAAGCAGAACCTGCTCCGCGCCATGAACTACGAGAAGAAGTATCTGAAGACGGAGCG 360
consensus_3305#1      CCCCCGACAACAACACCACCCCAGTGTGTGCTAATTAATTTACCCACATAATAAGGGATG 259
                      ** *   **  * *  * ** *    **  ***    *   *    *  ** * **   *

consensus_3305#0      TGCCGTCGTGGAGCAGGCCCGCATTGCCAAGGAGAAGGGCAACATCTACATCCCGGCCGA 420
consensus_3305#1      -ACGATTATAGGAAAAA---GAAAAGAAAAGAAAAACA--AACGTGTGCGTGG-GGTTAA 312
                        *  *  * *   *     * *  *  *** * **    *** * * * *   **   *

consensus_3305#0      GCCGAAGTGGCGTTTGTCATCCGTATCCGTGGTATCAACAAGGTTGCCCCGAAGTGCGCA 480
consensus_3305#1      GTTAACGTTTTCTTCTTCATCTTCTGATGGGATGGCTATAAGTT------GGAATTTACA 366
                      *   * **    **  *****       * * *  * * *** *      * * *   **

consensus_3305#0      AGGTGCTGCAGCTGTTCCGTCTGCGCCAGAT-CAACAACGGCACGTTCATCAAGCTGAAC 539
consensus_3305#1      A----TTACAGCAAATAGAGAAGAATCCGACGCCACGACGCCGCCGCCGCTGTGCTTAAA 422
                      *     * ****   *      *   * **  * ** *** * *   *     *** ** 

consensus_3305#0      ACGCCGACCGGGGCCTGGCG-CAAGAAGAACAACCACTACGTCGAGGGCGGCGACTTCGG 598
consensus_3305#1      CTAACGGCGGGGCTCTAACGTCGCGAAACAAAAACTCTATAT------------------ 464
                          ** * ***  **  ** *  ***  * ** * ***  *                  

consensus_3305#0      CAACCGCGAGGACAAGATCAACGAGCTGATCCAGCGTATGGTTTAAGTTTTCCCCGTAAA 658
consensus_3305#1      ------------------------------------------------------------
                                                                                  

consensus_3305#0      ACACACTGCGCGTCCATCCTGGTTTGTCCGTGCCTGGCGGCGAACAGCGGCCGCCTCACC 718
consensus_3305#1      ------------------------------------------------------------
                                                                                  

consensus_3305#0      GGGTGTGGGTAGGGGCAGATTTGTGGAAAGTTTTTTTTTAGGTTGGTGTGTGTGTGTCCA 778
consensus_3305#1      ------------------------------------------------------------
                                                                                  

consensus_3305#0      TCGAGATAAGTGGAATAAAAGTGAAGAGAAAAGCCTCGAGGTGAAAAATCCAAAAAAAA 837
consensus_3305#1      -----------------------------------------------------------