These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3306#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 867 fasta sequence [CCGCCGCGTACGACGTGCACACACACCGGGTCGAAGTTAACGGAAACGTCGGACTGGTCTCGCGCGCAAAAAAAAAGCCAGCCAGCCAGCCAGCATCACAAATATATTTTTTTCCGTTGCGTTCCCGAAAAGTCAGAGTAGCCCAGTCGTGGTAGTGTGTGCAAAACAACGGAGCACAAACACGCAAAACAGTGCGCGCGCGGAACAAAACCAAAAAAAAACAACGAAAATTGTGTCTAAGTGTCCGTTTTTTGTGCATGTGCGCGTGTGTGTGTGCGCGTAAATAATTCGCGTTGACACTAACAACCGGCGGCTGTTCCGGCGGTTGTACCGGCGGTTTACAGTTTCTGCAAAGGGCTTCGGAAGCTTCGACGTGAACGGTCTCCGCGGGCGGCCGGGTTTGGATCCCCGACGGGAAAATAAAACAGCGCCGCCAGTACCCGCGCAAGCAAAGGATGTGATCGTTTTCCGGCGAGGCGGAGCCGCATTCTCAACCCACTGACAGGCGGGAGTGTACATGTATCGCACGTTTCCTAGCAACCCAGTATACGGCATTTTTGCAACCACCAAACCACCAAAAACAAAACAAAAAATACGAGAGAGAAAATAATAATCAGAATATCTGACTCCTCCTCGCCTCCACCCCGAAAACGGCTCCCAATACTTGCGGAACAACGCTTTAATGTACGAATCGCTGTCTGGAGTCCGTTGAATGCAAGAGCAAAAAAAAAACTACCTACCTTTTATCAGCTCATTGCAACTGCAAGCGAACAACTTCTATTGCTAATTAACTACAACAACAACAACAACAACTACTACTACTACTAGCCTACTAATACCGCTACTACTACTACGGCGTGATACGAA] [+] EMBL BM624775 [CCGCCGCGTACGACGTGCACACACACCGGGTCGAAGTTAACGGAAACGTCGGACTGGTCTCGCGCGCAAAAAAAAAGCCAGCCAGCCAGCCAGCATCACAAATATATTTTTTTCCGTTGCGTTCCCGAAAAGTCAGAGTAGCCCAGTCGTGGTAGTGTGTGCAAAACAACGGAGCACAAACACGCAAAACAGTGCGCGCGCGGAACAAAACCAAAAAAAAACAACGAAAATTGTGTCTAAGTGTCCGTTTTTTGTGCATGTGCGCGTGTGTGTGTGCGCGTAAATAATTCGCGTTGACACTAACAACCGGCGGCTGTTCCGGCGGTTGTACCGGCGGTTTACAGTTTCTGCAAAGGGCTTCGGAAGCTTCGACGTGAACGGTCTCCGCGGGCGGCCGGGTTTGGATCCCCGACGGGAAAATAAAACAGCGCCGCCAGTACCCGCGCAAGCAAAGGATGTGATCGTTTTCCGGCGAGGCGGAGCCGCATTCTCAACCCACTGACAGGCGGGAGTGTACATGTATCGCACGTTTCCTAGCAACCCAGTATACGGCATTTTTGCAACCACCAAACCACCAAAAACAAAACAAAAAATACGAGAGAGAAAATAATAATCAGAATATCTGACTCCTCCTCGCCTCCACCCCGAAAACGGCTCCCAATACTTGCGGAACAACGCTTTAATGTACGAATCGCTGTCTGGAGTCC ] [+] EMBL BX628918 [ GGAACAAAACCAAAAAAAAACAACGAAAATTGTGTCTAAGTGTCCGTTTTTTGTGCATGTGCGCGTGTGTGTGTGCGCGTAAATAATTCGCGTTGACACTAACAACCGGCGGCTGTTCCGGCGGTTGTACCGGCGGNTTACAGTTTCTGCAAAGGGCTTCGGAAGCTTCGACGTGAACGGTCTCCGCGGGCGGCCGGGTTTGGATCCCCGACGGGAAAATAAAACAGCGCCGCCAGTACCCGCGCAAGCAAAGGATGTGATCGTTTTCCGGCGAGGCGGAGCCGCATTCTCAACCCACTGACAGGCGGGAGTGTACATGTATCGCACGTTTCCTAGCAACCCAGTATACGGCATTTTTGCAACCACCAAACCACCAAAAACAAAACAAAAAATACGAGAGAGAAAATAATAATCAGAATATCTGACTCCTCCTCGCCTCCACCCCGAAAACGGCTCCCAATACTTGCGGAACAACGCTTTAATGTACGAATCGCTGTCTGGAGTCCGTTGAATGCAAGAGCAAAAAAAAAACTACCTACCTTTTATCAGCTCATTGCAACTGCAAGCGAACAACTTCTATTGCTAATTAACTACAACAACAACAACAACAACTACTACTACTACTAGCCTACTAATACCGCTACTACTACTACGGCGTGATACGAA] consensusID : consensus_3306#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence [CCGCCGTGTACTGTTGTTCGTGTTGTTCGGTGCAACAATAAAAAAATATACAGAATCGCGCGCGCGTCCTCCCTTCGAACGTTCTGTTGTTTTTTTTTGGGACCGTGTTTGCCGTCGCCGCCCGCTTTCCGTTGCGTTCCCGAAAAGTCAGAGTAGCCCAGTCGTGGTAGTGTGTGCAAAACAACGGAGCACAAACACGCAAAACAGTGCGCGCGCGGAACAAAA] [+] EMBL BM624980 [CCGCCGTGTACTGTTGTTCGTGTTGTTCGGTGCAACAATAAAAAAATATACAGAATCGCGCGCGCGTCCTCCCTTCGAACGTTCTGTTGTTTTTTTTTGGGACCGTGTTTGCCGTCGCCGCCCGCTTTCCGTTGCGTTCCCGAAAAGTCAGAGTAGCCCAGTCGTGGTAGTGTGTGCAAAACAACGGAGCACAAACACGCAAAACAGTGCGCGCGCGGAACAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3306#0 CCGCCGCGTAC-GACGTGCACACACACCGGGTCGAAGTTAACGGAA-ACGTCGGACTGGT 58 consensus_3306#1 CCGCCGTGTACTGTTGTTCGTGTTGTTCGGTGCAACAATAAAAAAATATACAGAATCGCG 60 ****** **** * ** * *** * * *** ** * * * * consensus_3306#0 CTCGCGCGCAAAAAAAAAGCCAGCCAGCCAGCCAGCATCACAAATATATTT--------- 109 consensus_3306#1 CGCGCGTCCTCCCTTCGAAC-GTTCTGTTGTTTTTTTTTGGGACCGTGTTTGCCGTCGCC 119 * **** * * * * * * * * *** consensus_3306#0 -----TTTTCCGTTGCGTTCCCGAAAAGTCAGAGTAGCCCAGTCGTGGTAGTGTGTGCAA 164 consensus_3306#1 GCCCGCTTTCCGTTGCGTTCCCGAAAAGTCAGAGTAGCCCAGTCGTGGTAGTGTGTGCAA 179 ****************************************************** consensus_3306#0 AACAACGGAGCACAAACACGCAAAACAGTGCGCGCGCGGAACAAAACCAAAAAAAAACAA 224 consensus_3306#1 AACAACGGAGCACAAACACGCAAAACAGTGCGCGCGCGGAACAAAA-------------- 225 ********************************************** consensus_3306#0 CGAAAATTGTGTCTAAGTGTCCGTTTTTTGTGCATGTGCGCGTGTGTGTGTGCGCGTAAA 284 consensus_3306#1 ------------------------------------------------------------ consensus_3306#0 TAATTCGCGTTGACACTAACAACCGGCGGCTGTTCCGGCGGTTGTACCGGCGGTTTACAG 344 consensus_3306#1 ------------------------------------------------------------ consensus_3306#0 TTTCTGCAAAGGGCTTCGGAAGCTTCGACGTGAACGGTCTCCGCGGGCGGCCGGGTTTGG 404 consensus_3306#1 ------------------------------------------------------------ consensus_3306#0 ATCCCCGACGGGAAAATAAAACAGCGCCGCCAGTACCCGCGCAAGCAAAGGATGTGATCG 464 consensus_3306#1 ------------------------------------------------------------ consensus_3306#0 TTTTCCGGCGAGGCGGAGCCGCATTCTCAACCCACTGACAGGCGGGAGTGTACATGTATC 524 consensus_3306#1 ------------------------------------------------------------ consensus_3306#0 GCACGTTTCCTAGCAACCCAGTATACGGCATTTTTGCAACCACCAAACCACCAAAAACAA 584 consensus_3306#1 ------------------------------------------------------------ consensus_3306#0 AACAAAAAATACGAGAGAGAAAATAATAATCAGAATATCTGACTCCTCCTCGCCTCCACC 644 consensus_3306#1 ------------------------------------------------------------ consensus_3306#0 CCGAAAACGGCTCCCAATACTTGCGGAACAACGCTTTAATGTACGAATCGCTGTCTGGAG 704 consensus_3306#1 ------------------------------------------------------------ consensus_3306#0 TCCGTTGAATGCAAGAGCAAAAAAAAAACTACCTACCTTTTATCAGCTCATTGCAACTGC 764 consensus_3306#1 ------------------------------------------------------------ consensus_3306#0 AAGCGAACAACTTCTATTGCTAATTAACTACAACAACAACAACAACAACTACTACTACTA 824 consensus_3306#1 ------------------------------------------------------------ consensus_3306#0 CTAGCCTACTAATACCGCTACTACTACTACGGCGTGATACGAA 867 consensus_3306#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||