These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 698 fasta sequence [CCGCGCACCCGGAACTATGGAAGCTCGCGGTCGCGCTCGCGATCGCGTAGCGACCGACGGCGGTCGCGGTCGGGCAGTTTCCGGCGCCGGTTCAGCCGATCGCGGTCCCGTTCGTTTAGCCGATCGCGCTCCGGCAGCTACTCGCGCAGCCGGTCCCGATCGCGCAGCTTCGAACGGCGCCGCTTCGATCGGCGATTCTATCGCGGTGGCCGCGGGGGAGGAGGCGGCGGCGGCGGCGGTGGCGGCGGATACGGTGGCGACCGGATGGGACCGTTCGGGGGCAATCGGTTCAACAATTCGCGCGGCCACTTACCGGCGCGGTGGATTCCGCGATTTCAGGGACAACCGGTTCGTGGGAGGTCCGCGCGGCGGTGGCGGCGGTATTGGGGTGGTGGTCGCGATAGGCCACCGTTCCGGCCGCGGTATCGCGGACGTTTCCAGCGCTCGTACAGTCGCAGCATGAGCAAATCGCCCGATCGGCGCCCGATCAGCCCGGGCGATGACCGTTCCCGCCACTACCAAGCGGCGCGGGGATAGCCGGGACAGGGGTACGGCCGGGCAGCGGGGGGACAGTCGGGAGCGCTCTTCGCCGCCGA-CCGCCGCAGCCGGGCGGACAGTCGCGATAATCAGCGCGATCGGGAGGACAGCCGCGACCGTGACCATCGTCATCGGCGCTCGGAGGACCGTGACTCGTCCAA] [+] EMBL BM634061 [CCGCGCACCCGGAACTATGGAAGCTCGCGGTCGCGCTCGCGATCGCGTAGCGACCGACGGCGGTCGCGGTCGGGCAGTTTCCGGCGCCGGTTCAGCCGATCGCGGTCCCGTTCGTTTAGCCGATCGCGCTCCGGCAGCTACTCGCGCAGCCGGTCCCGATCGCGCAGCTTCGAACGGCGCCGCTTCGATCGGCGATTCTATCGCGGTGGCCGCGGGGGAGGAGGCGGCGGCGGCGGCGGTGGCGGCGGATACGGTGGCGACCGGATGGGACCGTTCGGGGGCAATCGGTTCAACAATTCGCGCGGCCACTTACCGGCGCGGTGGATTCCGCGATTTCAGGGACAACCGGTTCGTGGGAGGTCCGCGCGGCGGTGGCGGCGGTATTGGGGTGGTGGTCGCGATAGGCCACCGTTCCGGCCGCGGTATCGCGGACGTTTCCAGCGCTCGTACAGTCGCAGCATGAGCAAATCGCCCGATCGGCGCCCGATCAGCCCGGGCGATGACCGTTCCCGCCACTACCAAGCGGCGCGGGGATAGCCGGGACAGGGGTACGGCCGGGCAGCGGGGGGACAGTCGGGAGCGCTCTTCGCCGCCGA CCGCCGCAGCCGGGCGGACAGTCGCGATAATCAGC ] [+] EMBL BM624542 [ ccgcccaCGCGTCCGCGATCGCGTAGCGACCGACGGCGGTCGCGGTCGGGCGGTTTCCGGCGCCGGTTCAGCCGATCGCGGTCCCGTTCGTTTAGCCGATCGCGCTCCGGCAGCTACTCGCGCAGCCGGTCCCGATCGCGCAGCTTCGAACGGCGCCGCTTCGATCGGCGATTCTATCGCGGTGGCCGCGGGGGAGGAGGCGGCGGCGGCGGCGGTGGCGGCGGATACGGTGGCGACCGGATGGGACCGTTCGGGGGCAATCGGTTCAACAATTCGCGCGGCCAC TACCGGCGCGGTGGATTCCGCGATTTCAGGGACAACCGGTTCGTGGGAGGTCCGCGCGGCGGTGGCGGCGGTAT GGGTGGTGGTCGCGATAGGCCACCGTTCCGGCCGCGGTATCGCGGACGTTTCCAGCGCTCGTACAGTCGCAGCATGAGCAAATCGCCCGATCGGCGCCCGATCAGCCCGGGCGATGACCGTTCCCGCCACTACC AGCGGCGCGGGGATAGCCGGGACAGGGGTACGGCCGGGCAGCGGGGGGACAGTCGGGAGCGCTCTTCGCCGCCGACCCGCCGCAGCCGGGCGGACAGTCGCGATAATCAGCGCGATCGGGAGGACAGCCGCGACCGTGACCATCGTCATCGGCGCTCGGAGGACCGTGACTCGTCCAA] consensusID : consensus_3311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [CCGCCCACGCTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGGGGGGACAGTCGGGAGCGCTCTTCGCCGCCGACCCGCCGCAGCCGGGCGGACAGTCGCGATAATCAGCGCGATCGGGAGGACAGCCGCGACCGTGACCATCGTCATCGGCGCTCGGAGGACCGTGACTCGTCCAAGCGATCGAAGGACGATCACGCGGGCACGGCTGGCGGCGGCACCGGTGGTGGTGGTGCCGCTACCTCGGCCAGCGAGCGGCGGGACAGTTCGCCGGATTCCCCGCGCGCTGAAAAGTCGTCGCGCCAGCAGCGTCGCTCCTCTTCCGCCGGCAGCCAGCGGTCCAGCGGGTCGACTAAAATCCCGCACGACATTGAAGGGCGCTGGGCCGACGATACCGACGCGAAGGAGAGTGAGCAGAAGAGGCAGCGCCACGATAACGCAGAATCGGGCGGATCGCATTCCAATAGCGGTGGTGGTGGTGGAGGAGGTAGCGCTATCCCG] [+] EMBL BM624615 [CCGCCCACGCTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGGGGGGACAGTCGGGAGCGCTCTTCGCCGCCGACCCGCCGCAGCCGGGCGGACAGTCGCGATAATCAGCGCGATCGGGAGGACAGCCGCGACCGTGACCATCGTCATCGGCGCTCGGAGGACCGTGACTCGTCCAAGCGATCGAAGGACGATCACGCGGGCACGGCTGGCGGCGGCACCGGTGGTGGTGGTGCCGCTACCTCGGCCAGCGAGCGGCGGGACAGTTCGCCGGATTCCCCGCGCGCTGAAAAGTCGTCGCGCCAGCAGCGTCGCTCCTCTTCCGCCGGCAGCCAGCGGTCCAGCGGGTCGACTAAAATCCCGCACGACATTGAAGGGCGCTGGGCCGACGATACCGACGCGAAGGAGAGTGAGCAGAAGAGGCAGCGCCACGATAACGCAGAATCGGGCGGATCGCATTCCAATAGCGGTGGTGGTGGTGGAGGAGGTAGCGCTATCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3311#0 CCGCGCACCCGGAACTATGGAAGCTCGCGGTCGCGCTCGCGATCGCGTAGCGACCGACGG 60 consensus_3311#1 ------------------------------------------------------------ consensus_3311#0 CGGTCGCGGTCGGGCAGTTTCCGGCGCCGGTTCAGCCGATCGCGGTCCCGTTCGTTTAGC 120 consensus_3311#1 --------------------------------CCGCCCACGCTCCGCCCACGCGTCCGCC 28 * *** * *** *** * consensus_3311#0 CGATCGCGCTCCGGCAGCTACTCGCGCAGCCGGTCCCGATCGCGCAGCTTCGAACGGCGC 180 consensus_3311#1 CACGCGTCCGCCCACGCGTCCGCGGGGGGACAGTCGGGAGCGCTCTTCGCCG--CCGACC 86 * ** * ** * * * ** * * * *** ** *** * * ** * * * consensus_3311#0 CGCTTCGATCGGCGATTCTATCGCGGTGGCCGCGGGGGAGGAGGCGGCGGCGGCGGCGGT 240 consensus_3311#1 CGCCGCAGCCGGGCGGACAGTCGCGATAATCAGCGCGATCGGGAGGACAGCCGCGACCGT 146 *** * *** * ***** * * * * * * * * ** *** * ** consensus_3311#0 GGCGGCGGATACGGTGGCGACCGGATGGGACCGTT-CGGGGGCAATCGGTTCAACAAT-- 297 consensus_3311#1 GACCATCGTCAT--CGGCGCTCGGA--GGACCGTGACTCGTCCAAGCGATCGAAGGACGA 202 * * * * **** **** ******* * * *** ** * ** * consensus_3311#0 TCGCGCGGCCACTTACCGGCGCGGTGGATTCCGCGATTTCAGGGACAACCGGTTCGTGGG 357 consensus_3311#1 TCACGCGGGCACG-GCTGGCG--GCGGCACCGGTGGT----GGTGGTGCCGCTACCTCG- 254 ** ***** *** * **** * ** * * * * ** *** * * * * consensus_3311#0 AGGTCCGCGCGGCGGTGGCGGCGGTATTGGGGTGGTGGTCGCGATAGGCCACCGTTCCGG 417 consensus_3311#1 --GCCAGCG-AGCGGCGGGACAGTTCGCCGGATTCCCCGCGCGCTGAAAAGTCGTCGCGC 311 * * *** **** ** * * ** * **** * *** ** consensus_3311#0 CCGCGGTATCGCGGACGTTTCCAGCGCTCGTACAGTCGCAGCATGAGCAAATCGCCCGAT 477 consensus_3311#1 CAGCAGCGTCGCTC-CTCTTCCGCCG-----GCAGCCAGCGGTCCAGCGGGTCGACTAA- 364 * ** * **** * **** ** *** * * *** *** * * consensus_3311#0 CGGCGCCCGATCAGCCCGGGCGATGACCGTTCCCGCCACTACCAAGCGGCGCGGGGATAG 537 consensus_3311#1 --AATCCCGCACGACATTGAAGGGCGCTGGGCCGACGATACCGACGCGAAGGAGAGTGAG 422 **** * * * * * * ** * * * * *** * * * ** consensus_3311#0 CCGGGACAGGGGTACGGCCGGGCAGCGGGGGGACAGTCGGGAGCGCTCTTCGCCGCCGAC 597 consensus_3311#1 C--AGAAGAGGCAGCGCCACGATAACGCAGAATCGGGCGG-ATCGCATTCCAATAGCGGT 479 * ** ** ** * * * ** * * * *** * *** * * ** consensus_3311#0 CGCCGCAGCCGGGCGGACAGTCGCGATAATCAGCGCGATCGGGAGGACAGCCGCGACCGT 657 consensus_3311#1 GGTGGTGGTGGAGGAGGTAG---CGCTATCCCG--------------------------- 509 * * * * * * ** ** ** * * consensus_3311#0 GACCATCGTCATCGGCGCTCGGAGGACCGTGACTCGTCCAA 698 consensus_3311#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||