cluster # 3325

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Anopheles gambiae
cluster # 3325 cluster # 3325 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3325#0 length = 770 sequences # 2

consensus_3325#1 length = 562 sequences # 1

consensusID : consensus_3325#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 770
fasta sequence

                              [TACTAACGGTCGATCAATACCTACGAACGAATGAATGAACATGCGCGAGAGCGAGGAGTGTGTGTCTGCATTAAGCGTGAAGTGTGATTGTTGTGAGCAATAATTTATAGACTCGATATTATGTTAAGAGAGATGATGCAAGCGAGGGAAGGAATATGAATGACAAATGTTCAAAAAACAAACAAAAAAAGCTATACAATAATAGATAGATTGTGTGTTAAGCCCTTTTTTACAAGTCAATATTCAAAACAATGCTCGTAAAACGGTTCTCACCTTTCGTGGAGCCATTCATACCAGGGTGTAGTATGCGAGTGTTAGTTCTTTTCCTATCCTGGACTGTGTTCCACCTAACAGAAGAAACTGCCTGCGTTTTATACATTCCGAGCGCAAAATGATCCAACATTTGTGTAAAAAGCACACCGTTTATAAACACTACCACTTAATACTCAGCAACGTAGAACAATTTAGTACAGCCTAAATGAGCTAAATGAGGAGATCGTCCCAACATCCACTGCCGCTACAACAGAGAGCGTGGATGGCCAATCCAGCGCCGCTGCCCAACAATGCCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTGCCTGCACACCCGCAGTGAAGCCTTTCCTCGCAGAGGANGTGTAGGATATTTATTTAATTACTAGCGTTGTACAACTTACGCACCAGCCAGTGTAAGCCAATAGGCGGCAACGAAACAAACACGAGTATACACACTGCCACATGTTTCGCCAATCACGAATCAAAAGCAAT]

[+] EMBL BX627256             [TACTAACGGTCGATCAATACCTACGAACGAATGAATGAACATGCGCGAGAGCGAGGAGTGTGTGTCTGCATTAAGCGTGAAGTGTGATTGTTGTGAGCAATAATTTATAGACTCGATATTATGTTAAGAGAGATGATGCAAGCGAGGGAAGGAATATGAATGACAAATGTTCAAAAAACAAACAAAAAAAGCTATACAATAATAGATAGATTGTGTGTTAAGCCCTTTTTTACAAGTCAATATTCAAAACAATGCTCGTAAAACGGTTCTCACCTTTCGTGGAGCCATTCATACCAGGGTGTAGTATGCGAGTGTTAGTTCTTTTCCTATCCTGGACTGTGTTCCACCTAACAGAAGAAACTGCCTGCGTTTTATACATTCCGAGCGCAAAATGATCCAACATTTGTGTAAAAAGCACACCGTTTATAAACACTACCACTTAATACTCAGCAACGTAGAACAATTTAGTACAGCCTAAATGAGCTAAATGAGGAGATCGTCCCAACATCCACTGCCGCTACAACAGAGAGCGTGGATGGCCAATCCAGCGCCGCTGCCCAACAATGCCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTGCCTGCACACCCGCAGTGAAGCCTTTCCTCGCAGAGGANGTGTAGGATATTTATTTAATTACTAGCGTTGTACAACTTACGCACCAGCCAGTGTAAGCCAATAGGCGGCAACGAAACAAACACGAGTATACACACTGCCACATGTTT                        ]
[+] EMBL BX628652             [                                                                                                                                                                                  CAAACAAAAAAAGCTATACAATAATAGATAGATTGTGTGTTAAGCCCTTTTTTACAAGTCAATATTCAAAACAATGCTCGTAAAACGGTTCTCACCTTTCGTGGAGCCATTCATACCAGGGTGTAGTATGCGAGTGTTAGTTCTTTTCCTATCCTGGACTGTGTTCCACCTAACAGAAGAAACTGCCTGCGTTTTATACATTCCGAGCGCAAAATGATCCAACATTTGTGTAAAAAGCACACCGTTTATAAACACTACCACTTAATACTCAGCAACGTAGAACAATTTAGTACAGCCTAAATGAGCTAAATGAGGAGATCGTCCCAACATCCACTGCCGCTACAACAGAGAGCGTGGATGGCCAATCCAGCGCCGCTGCCCAACACTGCCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTGCCTGCACACCCGCAGTGAAGCCTTTCCTCGCAGAGGAGGTGTAGGATATTTATTTAATTACTAGCGTTGTACAACTTACGCACCAGCCAGTGTAAGCCAATAGGCGGCAACGAAACAAACACGAGTATACACACTGCCACATGTTTCGCCAATCACGAATCAAAAGCAAT]




>consensus_3325#0
TACTAACGGTCGATCAATACCTACGAACGAATGAATGAACATGCGCGAGAGCGAGGAGTG
TGTGTCTGCATTAAGCGTGAAGTGTGATTGTTGTGAGCAATAATTTATAGACTCGATATT
ATGTTAAGAGAGATGATGCAAGCGAGGGAAGGAATATGAATGACAAATGTTCAAAAAACA
AACAAAAAAAGCTATACAATAATAGATAGATTGTGTGTTAAGCCCTTTTTTACAAGTCAA
TATTCAAAACAATGCTCGTAAAACGGTTCTCACCTTTCGTGGAGCCATTCATACCAGGGT
GTAGTATGCGAGTGTTAGTTCTTTTCCTATCCTGGACTGTGTTCCACCTAACAGAAGAAA
CTGCCTGCGTTTTATACATTCCGAGCGCAAAATGATCCAACATTTGTGTAAAAAGCACAC
CGTTTATAAACACTACCACTTAATACTCAGCAACGTAGAACAATTTAGTACAGCCTAAAT
GAGCTAAATGAGGAGATCGTCCCAACATCCACTGCCGCTACAACAGAGAGCGTGGATGGC
CAATCCAGCGCCGCTGCCCAACAATGCCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTG
CCTGCACACCCGCAGTGAAGCCTTTCCTCGCAGAGGANGTGTAGGATATTTATTTAATTA
CTAGCGTTGTACAACTTACGCACCAGCCAGTGTAAGCCAATAGGCGGCAACGAAACAAAC
ACGAGTATACACACTGCCACATGTTTCGCCAATCACGAATCAAAAGCAAT

consensusID : consensus_3325#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 562
fasta sequence

                              [CCGCGGACGCGTGGGTGGAGCCATTCATACCAGGGTGTAGTATGCGAGTGTTAGTTCTTTTCCTATCCCGGACTGTGTTCCACCTAACAGAAGAAACTGCCTGCGTTTTATACATTCCGAGCTCAAAATGATCCAACATTTGTGTAAAGCACACCGTTTATAAACACTACCACTTAATACTCAGCAACGTAGAACAATTTAGTACAGCCTAAATGAGCTAAATGAGGAGATCGTCCCCACATCCACTGCCGCTACAACAGAGAGCGTGGATGGTCAACCCAGCGCCGCTGTCCAACACTGCCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTGCCTGCACACCCGCAGTGAAGCCTTTGCTCGCAGAGGAGGTGTAGGATATTTATTTAATTACTAGCGTTGTACAACTTACGCACCAGCCAGTGTAAGCCAATACGCGGCAACGAAACAGACACGAGCAAACACACTGCCACATGTTTCGCCAAACACGAATCAAAAGCAATGTGCGGTTGCGTTCAAAAATTAAGCGATTTCTTTGTAAATACGTACACAAACAATACG]

[+] EMBL BM624080             [CCGCGGACGCGTGGGTGGAGCCATTCATACCAGGGTGTAGTATGCGAGTGTTAGTTCTTTTCCTATCCCGGACTGTGTTCCACCTAACAGAAGAAACTGCCTGCGTTTTATACATTCCGAGCTCAAAATGATCCAACATTTGTGTAAAGCACACCGTTTATAAACACTACCACTTAATACTCAGCAACGTAGAACAATTTAGTACAGCCTAAATGAGCTAAATGAGGAGATCGTCCCCACATCCACTGCCGCTACAACAGAGAGCGTGGATGGTCAACCCAGCGCCGCTGTCCAACACTGCCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTGCCTGCACACCCGCAGTGAAGCCTTTGCTCGCAGAGGAGGTGTAGGATATTTATTTAATTACTAGCGTTGTACAACTTACGCACCAGCCAGTGTAAGCCAATACGCGGCAACGAAACAGACACGAGCAAACACACTGCCACATGTTTCGCCAAACACGAATCAAAAGCAATGTGCGGTTGCGTTCAAAAATTAAGCGATTTCTTTGTAAATACGTACACAAACAATACG]




>consensus_3325#1
CCGCGGACGCGTGGGTGGAGCCATTCATACCAGGGTGTAGTATGCGAGTGTTAGTTCTTT
TCCTATCCCGGACTGTGTTCCACCTAACAGAAGAAACTGCCTGCGTTTTATACATTCCGA
GCTCAAAATGATCCAACATTTGTGTAAAGCACACCGTTTATAAACACTACCACTTAATAC
TCAGCAACGTAGAACAATTTAGTACAGCCTAAATGAGCTAAATGAGGAGATCGTCCCCAC
ATCCACTGCCGCTACAACAGAGAGCGTGGATGGTCAACCCAGCGCCGCTGTCCAACACTG
CCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTGCCTGCACACCCGCAGTGAAGCCTTTG
CTCGCAGAGGAGGTGTAGGATATTTATTTAATTACTAGCGTTGTACAACTTACGCACCAG
CCAGTGTAAGCCAATACGCGGCAACGAAACAGACACGAGCAAACACACTGCCACATGTTT
CGCCAAACACGAATCAAAAGCAATGTGCGGTTGCGTTCAAAAATTAAGCGATTTCTTTGT
AAATACGTACACAAACAATACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3325#0      TACTAACGGTCGATCAATACCTACGAACGAATGAATGAACATGCGCGAGAGCGAGGAGTG 60
consensus_3325#1      ------------------------------------------------------------
                                                                                  

consensus_3325#0      TGTGTCTGCATTAAGCGTGAAGTGTGATTGTTGTGAGCAATAATTTATAGACTCGATATT 120
consensus_3325#1      ------------------------------------------------------------
                                                                                  

consensus_3325#0      ATGTTAAGAGAGATGATGCAAGCGAGGGAAGGAATATGAATGACAAATGTTCAAAAAACA 180
consensus_3325#1      ------------------------------------------------------------
                                                                                  

consensus_3325#0      AACAAAAAAAGCTATACAATAATAGATAGATTGTGTGTTAAGCCCTTTTTTACAAGTCAA 240
consensus_3325#1      ------------------------------------------------------------
                                                                                  

consensus_3325#0      TATTCAAAACAATGCTCGTAAAACGGTTCTCACCTTTCGTGGAGCCATTCATACCAGGGT 300
consensus_3325#1      -----------------------CCGCGGACGCGTGG-GTGGAGCCATTCATACCAGGGT 36
                                             * *    * * *   **********************

consensus_3325#0      GTAGTATGCGAGTGTTAGTTCTTTTCCTATCCTGGACTGTGTTCCACCTAACAGAAGAAA 360
consensus_3325#1      GTAGTATGCGAGTGTTAGTTCTTTTCCTATCCCGGACTGTGTTCCACCTAACAGAAGAAA 96
                      ******************************** ***************************

consensus_3325#0      CTGCCTGCGTTTTATACATTCCGAGCGCAAAATGATCCAACATTTGTGTAAAAAGCACAC 420
consensus_3325#1      CTGCCTGCGTTTTATACATTCCGAGCTCAAAATGATCCAACATTTGTGTAAA--GCACAC 154
                      ************************** *************************  ******

consensus_3325#0      CGTTTATAAACACTACCACTTAATACTCAGCAACGTAGAACAATTTAGTACAGCCTAAAT 480
consensus_3325#1      CGTTTATAAACACTACCACTTAATACTCAGCAACGTAGAACAATTTAGTACAGCCTAAAT 214
                      ************************************************************

consensus_3325#0      GAGCTAAATGAGGAGATCGTCCCAACATCCACTGCCGCTACAACAGAGAGCGTGGATGGC 540
consensus_3325#1      GAGCTAAATGAGGAGATCGTCCCCACATCCACTGCCGCTACAACAGAGAGCGTGGATGGT 274
                      *********************** *********************************** 

consensus_3325#0      CAATCCAGCGCCGCTGCCCAACAATGCCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTG 600
consensus_3325#1      CAACCCAGCGCCGCTGTCCAACACTGCCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTG 334
                      *** ************ ****** ************************************

consensus_3325#0      CCTGCACACCCGCAGTGAAGCCTTTCCTCGCAGAGGANGTGTAGGATATTTATTTAATTA 660
consensus_3325#1      CCTGCACACCCGCAGTGAAGCCTTTGCTCGCAGAGGAGGTGTAGGATATTTATTTAATTA 394
                      ************************* *********** **********************

consensus_3325#0      CTAGCGTTGTACAACTTACGCACCAGCCAGTGTAAGCCAATAGGCGGCAACGAAACAAAC 720
consensus_3325#1      CTAGCGTTGTACAACTTACGCACCAGCCAGTGTAAGCCAATACGCGGCAACGAAACAGAC 454
                      ****************************************** ************** **

consensus_3325#0      ACGAGTATACACACTGCCACATGTTTCGCCAATCACGAATCAAAAGCAAT---------- 770
consensus_3325#1      ACGAGCAAACACACTGCCACATGTTTCGCCAAACACGAATCAAAAGCAATGTGCGGTTGC 514
                      ***** * ************************ *****************          

consensus_3325#0      ------------------------------------------------
consensus_3325#1      GTTCAAAAATTAAGCGATTTCTTTGTAAATACGTACACAAACAATACG 562