cluster # 3326

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Anopheles gambiae
cluster # 3326 cluster # 3326 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3326#0 length = 820 sequences # 2

consensus_3326#1 length = 706 sequences # 1

consensusID : consensus_3326#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 820
fasta sequence

                              [GAAATCCATTTTCTTTTGACTGATCGGATTCCAGGGTGTGCGTAAGTGTGTGTGTTCGTGTGCGTCCCGCGTTCTGTTTTCTCCACTGAATCGTAACCGCGTGTGTGTGTGTTCCGCCTATGTGTTTTGCCTTATTATTACAACTCCCCCCCCCTCCTCTTGCGCGATCGCGTGGTGCTCGTGAAAATGAAATGACAAATCGTCCTCGAAGTTTCGTCGCTATGTTTATTAATCATAATTTTTATGCGCTCATTTCTACCTTTACAACTATTCTCCTCTCTCGATGTTGTGTGATCGGACAAGTTTTGGGCGAATGCGTTCGCTTTTGTTTCAATTGGCGCTTTAGTATTGTATTATTGTATATATATACCTTTGTAAACCAAACTCATACGATATTCTCCAACTATTATTTGATTATTAACACGCAAATGCTAATCGCACGCCGTCGTTGTTTGTGAACCGTTATGATTTCGATACCTATTAACAACGCAAGCTGCCACCGCGCGTGAAGCG-TTTTCTAATGCTGTCGTGAACTCCTCCTTA-TTTGTGGAGCGACGATCGCCTCTATTACTCATGAAACTAACCTACTTTTTTGATATTCATTTGATACTAGTGTTATGTTACAACT--TTTTTTT-TATATGTATGCGCTTATTTCACTACCAAAATACCACAACCCACCCGTTGTTCCCGTTTTCCCCCAAACGCGCGAGATATCCCACGTTCTCACTGTCACGGTGAGCAGTGCGACGACCCCGTTATTCCTACGTTTTCAACGCATATATACAGATTTTACCTTTTTTATACCAAGCCAAAAAAAAAA]

[+] EMBL BX626001             [GAAATCCATTTTCTTTTGACTGATCGGATTCCAGGGTGTGCGTAAGTGTGTGTGTTCGTGTGCGTCCCGCGTTCTGTTTTCTCCACTGAATCGTAACCGCGTGTGTGTGTGTTCCGCCTATGTGTTTTGCCTTATTATTACAACTCCCCCCCCCTCCTCTTGCGCGATCGCGTGGTGCTCGTGAAAATGAAATGACAAATCGTCCTCGAAGTTTCGTCGCTATGTTTATTAATCATAATTTTTATGCGCTCATTTCTACCTTTACAACTATTCTCCTCTCTCGATGTTGTGTGATCGGACAAGTTTTGGGCGAATGCGTTCGCTTTTGTTTCAATTGGCGCTTTAGTATTGTATTATTGTATATATATACCTTTGTAAACCAAACTCATACGATATTCTCCAACTATTATTTGATTATTAACACGCAAATGCTAATCGCACGCCGTCGTTGTTTGTGAACCGTTATGATTTCGATACCTATTAACAACGCAAGCTGCCACCGCGCGTGAAGCG TTTTCTAATGCTGTCGTGAACTCCTCCTTA TTTGTGGAGCGACGATCGCCTCTATTACTCATGAAACTAACCTACTTTTTTGATATTCATTTGATACTAGTGTTATGTTACAACT  TTTTTTT TATATGTATGCGCTTATTTCACTACCAAAATACCACAACCCACCCGTTGTTCCCGTTTTCCCCCAAACGCGCGAGATATCCCACGTTCTCACTGTCACGGTGAGCAGTGCGACGACCCCGTTATTCCTACGTTTTCAACGCATATATACAGATTTTACCTTTTTTATA                 ]
[+] EMBL CF541565             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGTTACCGATTAACAACGCAAGCTGCCCCCGCGCGTGAAGCGTTTTTCTAAAGCTGTCGTG ACTCCTCCTTATTTTGTGAAGCGACGATCGCCTCTATTACTCATGAAACTAACCTACTTTTTTGATATTCCTTTGATACTAGTGTTATGTTACAACTTATTTTTTTATATATGTATGCGCTTATTTCACTACCAAAATACCACAACCCACCCGTTGTTCCCGTTTTCCCCCAAACGCGCGAGATATCCCACGTTCTCACTGTTACGGTGAGCAGTGCGACGACCCCGTTATTCCTACGTTTTCAACGCATATATACAGATTTTACCTTTTTTATACCAAGCCAAAAAAAAAA]




>consensus_3326#0
GAAATCCATTTTCTTTTGACTGATCGGATTCCAGGGTGTGCGTAAGTGTGTGTGTTCGTG
TGCGTCCCGCGTTCTGTTTTCTCCACTGAATCGTAACCGCGTGTGTGTGTGTTCCGCCTA
TGTGTTTTGCCTTATTATTACAACTCCCCCCCCCTCCTCTTGCGCGATCGCGTGGTGCTC
GTGAAAATGAAATGACAAATCGTCCTCGAAGTTTCGTCGCTATGTTTATTAATCATAATT
TTTATGCGCTCATTTCTACCTTTACAACTATTCTCCTCTCTCGATGTTGTGTGATCGGAC
AAGTTTTGGGCGAATGCGTTCGCTTTTGTTTCAATTGGCGCTTTAGTATTGTATTATTGT
ATATATATACCTTTGTAAACCAAACTCATACGATATTCTCCAACTATTATTTGATTATTA
ACACGCAAATGCTAATCGCACGCCGTCGTTGTTTGTGAACCGTTATGATTTCGATACCTA
TTAACAACGCAAGCTGCCACCGCGCGTGAAGCGTTTTCTAATGCTGTCGTGAACTCCTCC
TTATTTGTGGAGCGACGATCGCCTCTATTACTCATGAAACTAACCTACTTTTTTGATATT
CATTTGATACTAGTGTTATGTTACAACTTTTTTTTTATATGTATGCGCTTATTTCACTAC
CAAAATACCACAACCCACCCGTTGTTCCCGTTTTCCCCCAAACGCGCGAGATATCCCACG
TTCTCACTGTCACGGTGAGCAGTGCGACGACCCCGTTATTCCTACGTTTTCAACGCATAT
ATACAGATTTTACCTTTTTTATACCAAGCCAAAAAAAAAA

consensusID : consensus_3326#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence

                              [CCGCCCACGCGTCCGGATTCCAGGGTGTGCGTAAGTGTGTGTGTTCGTGTGCGTCCCGCGTTCTGTTTTCTCCACTGAATCGTAACCGCGTGTGTGTGTGTGTTCCGCCTATGTGTTTTGACTTATTATTACAACTCCCCCCCCCCCCCCTCCTCCTCTTGCGCGATCGCGTGGTGCTCGTGAAAATGAAATGACAAATCGTCCTCGAAGTTTCGTCGCTATGTTTATTAATCATAATTTTTATGCGCTCATTTCTACCTTTACAACTATTCTCCTCTCTCGATGTTGTGTGATCGGACAAGTTTTGGGCGAATGCGTTCGCTTTTGTTTCAATTGGCGCTTTAGTATTGTATTATTGTATATATATATATATATCTATGTAAACCAAACTCACACGATATTCTCCAACTATTATTTGATTATTAACACGCAAATGCTAATCGCACGCCGTCGTTGTTTGTGAACCGTTATGATTTCGTTACCGATTAACAACGCAAGCTGCCCCCGCGCGTGAAGCGTTTTTCTAAAGCTGTCGTGACTCCTCCTTATTTTGTGAAGCGACGATCGCCTCTATTACTCATGAAACTAACCTACTTTTTTGATATTCCTTTGATACTAGTGTTATGTTACAACTTATTTTTTTTATATGTATGCGCTTATTTCACTACCAAAATACCACAACCCCCCCCGTTGTTCCCCGGTTTCC]

[+] EMBL BM617977             [CCGCCCACGCGTCCGGATTCCAGGGTGTGCGTAAGTGTGTGTGTTCGTGTGCGTCCCGCGTTCTGTTTTCTCCACTGAATCGTAACCGCGTGTGTGTGTGTGTTCCGCCTATGTGTTTTGACTTATTATTACAACTCCCCCCCCCCCCCCTCCTCCTCTTGCGCGATCGCGTGGTGCTCGTGAAAATGAAATGACAAATCGTCCTCGAAGTTTCGTCGCTATGTTTATTAATCATAATTTTTATGCGCTCATTTCTACCTTTACAACTATTCTCCTCTCTCGATGTTGTGTGATCGGACAAGTTTTGGGCGAATGCGTTCGCTTTTGTTTCAATTGGCGCTTTAGTATTGTATTATTGTATATATATATATATATCTATGTAAACCAAACTCACACGATATTCTCCAACTATTATTTGATTATTAACACGCAAATGCTAATCGCACGCCGTCGTTGTTTGTGAACCGTTATGATTTCGTTACCGATTAACAACGCAAGCTGCCCCCGCGCGTGAAGCGTTTTTCTAAAGCTGTCGTGACTCCTCCTTATTTTGTGAAGCGACGATCGCCTCTATTACTCATGAAACTAACCTACTTTTTTGATATTCCTTTGATACTAGTGTTATGTTACAACTTATTTTTTTTATATGTATGCGCTTATTTCACTACCAAAATACCACAACCCCCCCCGTTGTTCCCCGGTTTCC]




>consensus_3326#1
CCGCCCACGCGTCCGGATTCCAGGGTGTGCGTAAGTGTGTGTGTTCGTGTGCGTCCCGCG
TTCTGTTTTCTCCACTGAATCGTAACCGCGTGTGTGTGTGTGTTCCGCCTATGTGTTTTG
ACTTATTATTACAACTCCCCCCCCCCCCCCTCCTCCTCTTGCGCGATCGCGTGGTGCTCG
TGAAAATGAAATGACAAATCGTCCTCGAAGTTTCGTCGCTATGTTTATTAATCATAATTT
TTATGCGCTCATTTCTACCTTTACAACTATTCTCCTCTCTCGATGTTGTGTGATCGGACA
AGTTTTGGGCGAATGCGTTCGCTTTTGTTTCAATTGGCGCTTTAGTATTGTATTATTGTA
TATATATATATATATCTATGTAAACCAAACTCACACGATATTCTCCAACTATTATTTGAT
TATTAACACGCAAATGCTAATCGCACGCCGTCGTTGTTTGTGAACCGTTATGATTTCGTT
ACCGATTAACAACGCAAGCTGCCCCCGCGCGTGAAGCGTTTTTCTAAAGCTGTCGTGACT
CCTCCTTATTTTGTGAAGCGACGATCGCCTCTATTACTCATGAAACTAACCTACTTTTTT
GATATTCCTTTGATACTAGTGTTATGTTACAACTTATTTTTTTTATATGTATGCGCTTAT
TTCACTACCAAAATACCACAACCCCCCCCGTTGTTCCCCGGTTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3326#0      GAAATCCATTTTCTTTTGACTGATCGGATTCCAGGGTGTGCGTAAGTGTGTGTGTTCGTG 60
consensus_3326#1      -----------CCGCCCACGCGTCCGGATTCCAGGGTGTGCGTAAGTGTGTGTGTTCGTG 49
                                  *        *  ************************************

consensus_3326#0      TGCGTCCCGCGTTCTGTTTTCTCCACTGAATCGTAACCGCGTGTGTGTGTGT--TCCGCC 118
consensus_3326#1      TGCGTCCCGCGTTCTGTTTTCTCCACTGAATCGTAACCGCGTGTGTGTGTGTGTTCCGCC 109
                      ****************************************************  ******

consensus_3326#0      TATGTGTTTTGCCTTATTATTACAACTCCCCCCCCC--------TCCTCTTGCGCGATCG 170
consensus_3326#1      TATGTGTTTTGACTTATTATTACAACTCCCCCCCCCCCCCCTCCTCCTCTTGCGCGATCG 169
                      *********** ************************        ****************

consensus_3326#0      CGTGGTGCTCGTGAAAATGAAATGACAAATCGTCCTCGAAGTTTCGTCGCTATGTTTATT 230
consensus_3326#1      CGTGGTGCTCGTGAAAATGAAATGACAAATCGTCCTCGAAGTTTCGTCGCTATGTTTATT 229
                      ************************************************************

consensus_3326#0      AATCATAATTTTTATGCGCTCATTTCTACCTTTACAACTATTCTCCTCTCTCGATGTTGT 290
consensus_3326#1      AATCATAATTTTTATGCGCTCATTTCTACCTTTACAACTATTCTCCTCTCTCGATGTTGT 289
                      ************************************************************

consensus_3326#0      GTGATCGGACAAGTTTTGGGCGAATGCGTTCGCTTTTGTTTCAATTGGCGCTTTAGTATT 350
consensus_3326#1      GTGATCGGACAAGTTTTGGGCGAATGCGTTCGCTTTTGTTTCAATTGGCGCTTTAGTATT 349
                      ************************************************************

consensus_3326#0      GTATTATTGTATATATATAC------CTTTGTAAACCAAACTCATACGATATTCTCCAAC 404
consensus_3326#1      GTATTATTGTATATATATATATATATCTATGTAAACCAAACTCACACGATATTCTCCAAC 409
                      *******************       ** *************** ***************

consensus_3326#0      TATTATTTGATTATTAACACGCAAATGCTAATCGCACGCCGTCGTTGTTTGTGAACCGTT 464
consensus_3326#1      TATTATTTGATTATTAACACGCAAATGCTAATCGCACGCCGTCGTTGTTTGTGAACCGTT 469
                      ************************************************************

consensus_3326#0      ATGATTTCGATACCTATTAACAACGCAAGCTGCCACCGCGCGTGAAGCGTTTT-CTAATG 523
consensus_3326#1      ATGATTTCGTTACCGATTAACAACGCAAGCTGCCCCCGCGCGTGAAGCGTTTTTCTAAAG 529
                      ********* **** ******************* ****************** **** *

consensus_3326#0      CTGTCGTGAACTCCTCCTTATTT-GTGGAGCGACGATCGCCTCTATTACTCATGAAACTA 582
consensus_3326#1      CTGTCGTGA-CTCCTCCTTATTTTGTGAAGCGACGATCGCCTCTATTACTCATGAAACTA 588
                      ********* ************* *** ********************************

consensus_3326#0      ACCTACTTTTTTGATATTCATTTGATACTAGTGTTATGTTACAACTT--TTTTTTTATAT 640
consensus_3326#1      ACCTACTTTTTTGATATTCCTTTGATACTAGTGTTATGTTACAACTTATTTTTTTTATAT 648
                      ******************* ***************************  ***********

consensus_3326#0      GTATGCGCTTATTTCACTACCAAAATACCACAACCCACCC-GTTGTTCCCGTTTTCCCCC 699
consensus_3326#1      GTATGCGCTTATTTCACTACCAAAATACCACAACCCCCCCCGTTGTTCCCCGGTTTCC-- 706
                      ************************************ *** *********   ** **  

consensus_3326#0      AAACGCGCGAGATATCCCACGTTCTCACTGTCACGGTGAGCAGTGCGACGACCCCGTTAT 759
consensus_3326#1      ------------------------------------------------------------
                                                                                  

consensus_3326#0      TCCTACGTTTTCAACGCATATATACAGATTTTACCTTTTTTATACCAAGCCAAAAAAAAA 819
consensus_3326#1      ------------------------------------------------------------
                                                                                  

consensus_3326#0      A 820
consensus_3326#1      -