These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [GGCAGAATCGCCACGAGNTGATCAAGTACGAAGCGGGCATCCTCTCACTGTATCGACTTTGAGACCCAAACCTTCGTGGACAAGCTTCAGGATGTGTTGATCAACGAAAGGTATCAGGAAAATGTGAACAAACTGCACCGATTGCTTAACGACCAGCCGCAAACGGCGCTGGAGCGTGCCGTCTGGTGGATCGAGTATGTGGCACGCAACGGCGGCACCAGACCGCTACACGTGCGCCATCTGTCCTGGTTCGAGTACCTGATGCTGGACGTGCTGATTGTGGTTGGTGTCTTGGCTAGTCTCGCGTGTGCGCTGATTGCATACGCTATTGTTCGAGCAGTTCGCTACTCGAGAAGCTTACCGATGGAGATGGTGACGCGCGGTAGCCGGAAGTGCAAGATGATGTAAAAAAGCGGACGTTCTCTAACGGCTCGCCAAAGATTGGACGCGAGAGTTACAGTGCTATAGCGATTGTATATTTGCTATGCAAAAGAACATTACAAAGAAGGTGGTTATTGTGCAGATTTAAAATCAAATCTCCCGAACTTAAGCGTCAGCAAGGCATAAGATGATTAATTTTAAGAGCAGAAAAAAAACCTTTACGACAGGGTTGTAATCTGCGAGCAAAGATTTCAAATAGGTTACTACATCAGGTNACAGTCATAGGACTAGATTAGAATTGTAATCAAACGGTATCNGGTATACGGNCTAGTNAAGTTAGATGGCATTAAGAAACGGAAATGCCTCAAAACACATTTACGAAAAGTCTGAAA] [+] EMBL BX467304 [GGCAGAATCGCCACGAGNTGATCAAGTACGAAGCGGGCATCCTCTCACTGTATCGACTTTGAGACCCAAACCTTCGTGGACAAGCTTCAGGATGTGTTGATCAACGAAAGGTATCAGGAAAATGTGAACAAACTGCACCGATTGCTTAACGACCAGCCGCAAACGGCGCTGGAGCGTGCCGTCTGGTGGATCGAGTATGTGGCACGCAACGGCGGCACCAGACCGCTACACGTGCGCCATCTGTCCTGGTTCGAGTACCTGATGCTGGACGTGCTGATTGTGGTTGGTGTCTTGGCTAGTCTCGCGTGTGCGCTGATTGCATACGCTATTGTTCGAGCAGTTCGCTACTCGAGAAGCTTACCGATGGAGATGGTGACGCGCGGTAGCCGGAAGTGCAAGATGATGTAAAAAAGCGGACGTTCTCTAACGGCTCGCCAAAGATTGGACGCGAGAGTTACAGTGCTATAGCGATTGTATATTTGCTATGCAAAAGAACATTACAAAGAAGGTGGTTATTGTGCAGATTTAAAATCAAATCTCCCGAACTTAAGCGTCAGCAAGGCATAAGATGATTAATTTTAAGAGCAGAAAAAAAACCTTTACGACAGGGTTGTAATCTGCGAGCAAAGATTTCAAATAGGTTACTACATCAGGTNACAGTCATAGGACTAGATTAGAATTGTAATCAAACGGTATCNGGTATACGGNCTAGTNAAGTTAGATGGCATTAAGAAACGGAAATGCCTCAAAACACATTTACGAAAAGTCTGAAA] consensusID : consensus_333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [CATTCCTCACGGACGGTGGCCAAATCAACGTCGAGGATGCCATCCAGCACAAGGTGCCCGTCGTCGGCATCAGCTACTCAACCTCGTACGACCACTATCTGCGCCAAATCGTCAAGTACGAAGCGGGCATCATCTCACTGATCGACTTTGAGACGCAAACCTTCGTGGACAAGCTTCAGGATGTGTTGATCAACGAAAGGTATCAGGAAAATGTGAACAAACTGCACCGATTGCTTAACGACCAGCCGCAAACGGCGCTGGAGCGTGCCGTCTGGTGGATCGAGTATGTGGCACGCAACGGCGGCACCAAACCGCTACACGTGCGCCATCTGTCCTGGTTCGAGTACCTGATGCTGGACGTGCTGATTGTGGTTGGTGTCTTGGCTAGTCTCGCGTGTGCGCTGATTGCATACGCTATTGTTCGAGCAGTTCGCTACTCGAGAAGCTTACCGATGGAGATGGTGACGCGCGGTAGCCGGAAGTGCAAGATGATGTAAAAAGCGGACGTTCTCTAACGGCTCGTCAAAGATTGGACGCGAGAGTTATAGTGCTATA] [+] EMBL BX604806 [CATTCCTCACGGACGGTGGCCAAATCAACGTCGAGGATGCCATCCAGCACAAGGTGCCCGTCGTCGGCATCAGCTACTCAACCTCGTACGACCACTATCTGCGCCAAATCGTCAAGTACGAAGCGGGCATCATCTCACTGATCGACTTTGAGACGCAAACCTTCGTGGACAAGCTTCAGGATGTGTTGATCAACGAAAGGTATCAGGAAAATGTGAACAAACTGCACCGATTGCTTAACGACCAGCCGCAAACGGCGCTGGAGCGTGCCGTCTGGTGGATCGAGTATGTGGCACGCAACGGCGGCACCAAACCGCTACACGTGCGCCATCTGTCCTGGTTCGAGTACCTGATGCTGGACGTGCTGATTGTGGTTGGTGTCTTGGCTAGTCTCGCGTGTGCGCTGATTGCATACGCTATTGTTCGAGCAGTTCGCTACTCGAGAAGCTTACCGATGGAGATGGTGACGCGCGGTAGCCGGAAGTGCAAGATGATGTAAAAAGCGGACGTTCTCTAACGGCTCGTCAAAGATTGGACGCGAGAGTTATAGTGCTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_333#0 ------------------------------------------------------------ consensus_333#1 CATTCCTCACGGACGGTGGCCAAATCAACGTCGAGGATGCCATCCAGCACAAGGTGCCCG 60 consensus_333#0 ------------------------------GGCAGAATCGCCACGAGNTGATCAAGTACG 30 consensus_333#1 TCGTCGGCATCAGCTACTCAACCTCGTACGACCACTATCTGCGCCAAATCGTCAAGTACG 120 ** *** * * * * ********* consensus_333#0 AAGCGGGCATCCTCTCACTGTATCGACTTTGAGACCCAAACCTTCGTGGACAAGCTTCAG 90 consensus_333#1 AAGCGGGCATCATCTCACTG-ATCGACTTTGAGACGCAAACCTTCGTGGACAAGCTTCAG 179 *********** ******** ************** ************************ consensus_333#0 GATGTGTTGATCAACGAAAGGTATCAGGAAAATGTGAACAAACTGCACCGATTGCTTAAC 150 consensus_333#1 GATGTGTTGATCAACGAAAGGTATCAGGAAAATGTGAACAAACTGCACCGATTGCTTAAC 239 ************************************************************ consensus_333#0 GACCAGCCGCAAACGGCGCTGGAGCGTGCCGTCTGGTGGATCGAGTATGTGGCACGCAAC 210 consensus_333#1 GACCAGCCGCAAACGGCGCTGGAGCGTGCCGTCTGGTGGATCGAGTATGTGGCACGCAAC 299 ************************************************************ consensus_333#0 GGCGGCACCAGACCGCTACACGTGCGCCATCTGTCCTGGTTCGAGTACCTGATGCTGGAC 270 consensus_333#1 GGCGGCACCAAACCGCTACACGTGCGCCATCTGTCCTGGTTCGAGTACCTGATGCTGGAC 359 ********** ************************************************* consensus_333#0 GTGCTGATTGTGGTTGGTGTCTTGGCTAGTCTCGCGTGTGCGCTGATTGCATACGCTATT 330 consensus_333#1 GTGCTGATTGTGGTTGGTGTCTTGGCTAGTCTCGCGTGTGCGCTGATTGCATACGCTATT 419 ************************************************************ consensus_333#0 GTTCGAGCAGTTCGCTACTCGAGAAGCTTACCGATGGAGATGGTGACGCGCGGTAGCCGG 390 consensus_333#1 GTTCGAGCAGTTCGCTACTCGAGAAGCTTACCGATGGAGATGGTGACGCGCGGTAGCCGG 479 ************************************************************ consensus_333#0 AAGTGCAAGATGATGTAAAAAAGCGGACGTTCTCTAACGGCTCGCCAAAGATTGGACGCG 450 consensus_333#1 AAGTGCAAGATGATGTAAAAA-GCGGACGTTCTCTAACGGCTCGTCAAAGATTGGACGCG 538 ********************* ********************** *************** consensus_333#0 AGAGTTACAGTGCTATAGCGATTGTATATTTGCTATGCAAAAGAACATTACAAAGAAGGT 510 consensus_333#1 AGAGTTATAGTGCTATA------------------------------------------- 555 ******* ********* consensus_333#0 GGTTATTGTGCAGATTTAAAATCAAATCTCCCGAACTTAAGCGTCAGCAAGGCATAAGAT 570 consensus_333#1 ------------------------------------------------------------ consensus_333#0 GATTAATTTTAAGAGCAGAAAAAAAACCTTTACGACAGGGTTGTAATCTGCGAGCAAAGA 630 consensus_333#1 ------------------------------------------------------------ consensus_333#0 TTTCAAATAGGTTACTACATCAGGTNACAGTCATAGGACTAGATTAGAATTGTAATCAAA 690 consensus_333#1 ------------------------------------------------------------ consensus_333#0 CGGTATCNGGTATACGGNCTAGTNAAGTTAGATGGCATTAAGAAACGGAAATGCCTCAAA 750 consensus_333#1 ------------------------------------------------------------ consensus_333#0 ACACATTTACGAAAAGTCTGAAA 773 consensus_333#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||