These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3330#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1242 fasta sequence [CCGCACCATTCGGAGTGTATGAGTGGCGCGTGTGATACCAGAACAGAACCCCGAAATCGGACTACTTTGCGTAAACGCCCACGGTGTGCTGCTTGCTCCATAAAGGTCAAACAACGCTCGTGCAGTGATATAGTGCTAAACGGAGTGCATCTTATGTGTTTTATAAGTGTAATCTTCCAAAAAATTGCTCACACCATCAGAAAACGTCACCATCTTGCGTGAAGTTCCAATCACTCATATGTGTTTTGCGGTACAAATGTACCACATGCGGCAGTGTCGTCGTCGGAAGTGAAACGCGAATGGGACAGGGAGGACAAATCTCTTGCAGAAATCCCACACACGTCTCAATTAGCTGTAAGTGATTAGCGCTTTCCGTGTATTGCTACAATCGTTTCAACACAACCGAGCAAAACCAGCATCGTCACCATCATCATCAGCACCATCGAAATCGACACCAACCAACATGGTTTACGTCTCCACCCGTTCGACCACGCTATGGATGCTACTACTACTGCTGCAGAACCTTGTCACAATCAAATCATTCGAAGTGTACTGGAACATACCGACCTTCATGTGCAATCAGTTTGGCTTCGAGTTTAGCAGTGTCAACCGGACGTACTCGGTCGTGCAAAACCGAAACGATACCTTCCGTGGCAACGCCGTCTCGATACTGTACGATCCGGGCAAGTTCCCGGCCCTGCTCGAGAAACCGTCCACCAAAACGCTCTACAAGCGTAACGGTGGTGTGCCGCAGGAGGGCAACCTGACCGAGCATCTGGAGATATTCGAGCGCCATCTGGACGAGCTGATACCGGATCGCAATTTCAGCGGTATCGGCATCATCGACTTCGAGTCCTGGCGGCCCATCTACCGGCAGAACTTTGGCTCGCTCCAACCGTACAAGGATCTGTCGGTCAAGATCGAACGCGAACGACACCCGTACTGGTCGGGCAACCATCTCGAACGGGAGGCGACCCGTCGATTCGAAGCAACAGGGCGCGAGTTTATGGAGCAAACGCTACTGCTAGCGAAACAGCGACGACCCCAAGCGGCCTGGGGTTACTATGCCTTTCCCTACTGCTTCAACATGAACGGTGCGGCTAGCACTCGCTCGGAAAACTGTTCACCGGAAGTGCAGCGAGAAAACAACCGCATCATGTGGCTGTTCGATGGATCGGACATCATCTTCCCATCTGTCTATCTGCGGGAAAAGCTATCACCAAGCGAACGGGAGCAGCTAAT] [+] EMBL BM623662 [CCGCACCATTCGGAGTGTATGAGTGGCGCGTGTGATACCAGAACAGAACCCCGAAATCGGACTACTTTGCGTAAACGCCCACGGTGTGCTGCTTGCTCCATAAAGGTCAAACAACGCTCGTGCAGTGATATAGTGCTAAACGGAGTGCATCTTATGTGTTTTATAAGTGTAATCTTCCAAAAAATTGCTCACACCATCAGAAAACGTCACCATCTTGCGTGAAGTTCCAATCACTCATATGTGTTTTGCGGTACAAATGTACCACATGCGGCAGTGTCGTCGTCGGAAGTGAAACGCGAATGGGACAGGGAGGACAAATCTCTTGCAGAAATCCCACACACGTCTCAATTAGCTGTAAGTGATTAGCGCTTTCCGTGTATTGCTACAATCGTTTCAACACAACCGAGCAAAACCAGCATCGTCACCATCATCATCAGCACCATCGAAATCGACACCAACCAACATGGTTTACGTCTCCACCCGTTCGACCACGCTATGGATGCTACTACTACTGCTGCAGAACCTTGTCACAATCAAATCATTCGAAGTGTACTGGAACATACCGACCTTCATGTGCAATCAGTTTGGCTTCGAGTTTAGCAGTGTCAACCGGACGTACTCGGTCGTGCAAAACCGAAACGATACCTTCCGTGGCAACGCCGTCTCGATACTGTACGATCCGGGCAAGTTCCCGGCCC ] [+] EMBL BX628458 [ CTCGGTCGTGCAAAACCGAAACGATACCTTCCGTGGCAACGCCGTCTCGATACTGTACGATCCGGGCAAGTTCCCGGCCCTGCTCGAGAAACCGTCCACCAAAACGCTCTACAAGCGTAACGGTGGTGTGCCGCAGGAGGGCAACCTGACCGAGCATCTGGAGATATTCGAGCGCCATCTGGACGAGCTGATACCGGATCGCAATTTCAGCGGTATCGGCATCATCGACTTCGAGTCCTGGCGGCCCATCTACCGGCAGAACTTTGGCTCGCTCCAACCGTACAAGGATCTGTCGGTCAAGATCGAACGCGAACGACACCCGTACTGGTCGGGCAACCATCTCGAACGGGAGGCGACCCGTCGATTCGAAGCAACAGGGCGCGAGTTTATGGAGCAAACGCTACTGCTAGCGAAACAGCGACGACCCCAAGCGGCCTGGGGTTACTATGCCTTTCCCTACTGCTTCAACATGAACGGTGCGGCTAGCACTCGCTCGGAAAACTGTTCACCGGAAGTGCAGCGAGAAAACAACCGCATCATGTGGCTGTTCGATGGATCGGACATCATCTTCCCATCTGTCTATCTGCGGGAAAAGCTATCACCAAGCGAACGGGAGCAGCTAAT] consensusID : consensus_3330#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [AGGCCAAGAATCCCGCACGAGTGGTATCGTCACCATCATCATCAGCACCATCGAAATCGACACCAACCAACATGGTTTACGTCTCCACCCGTTCGACCACGCTATGGATGCTACTACTACGTGCTGCAGAACCTTGTCACAATCAAGATCATTCGAAGTGTACTGGAACATACCGACCTTCATGTGCAATCAGTTTGGCTTCGAGTTTAGCAGTGTCAACCGGACGTACTCGGTCGTGCAAGAACCGAAACGATACCTTCCGTGGCAACGCCGTCTCGGATACTGTACGATCCGGGCAAGATTCCCGGGCCCTGCNTCGAGAAACCGTCCAGCAAAACGCTCTACGAAGCGTAACGGTGGTGTGCCGCAGGAGGGCAACCTTGACCGA] [+] EMBL BX466612 [AGGCCAAGAATCCCGCACGAGTGGTATCGTCACCATCATCATCAGCACCATCGAAATCGACACCAACCAACATGGTTTACGTCTCCACCCGTTCGACCACGCTATGGATGCTACTACTACGTGCTGCAGAACCTTGTCACAATCAAGATCATTCGAAGTGTACTGGAACATACCGACCTTCATGTGCAATCAGTTTGGCTTCGAGTTTAGCAGTGTCAACCGGACGTACTCGGTCGTGCAAGAACCGAAACGATACCTTCCGTGGCAACGCCGTCTCGGATACTGTACGATCCGGGCAAGATTCCCGGGCCCTGCNTCGAGAAACCGTCCAGCAAAACGCTCTACGAAGCGTAACGGTGGTGTGCCGCAGGAGGGCAACCTTGACCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3330#0 CCGCACCATTCGGAGTGTATGAGTGGCGCGTGTGATACCAGAACAGAACCCCGAAATCGG 60 consensus_3330#1 ------------------------------------------------------------ consensus_3330#0 ACTACTTTGCGTAAACGCCCACGGTGTGCTGCTTGCTCCATAAAGGTCAAACAACGCTCG 120 consensus_3330#1 ------------------------------------------------------------ consensus_3330#0 TGCAGTGATATAGTGCTAAACGGAGTGCATCTTATGTGTTTTATAAGTGTAATCTTCCAA 180 consensus_3330#1 ------------------------------------------------------------ consensus_3330#0 AAAATTGCTCACACCATCAGAAAACGTCACCATCTTGCGTGAAGTTCCAATCACTCATAT 240 consensus_3330#1 ------------------------------------------------------------ consensus_3330#0 GTGTTTTGCGGTACAAATGTACCACATGCGGCAGTGTCGTCGTCGGAAGTGAAACGCGAA 300 consensus_3330#1 ------------------------------------------------------------ consensus_3330#0 TGGGACAGGGAGGACAAATCTCTTGCAGAAATCCCACACACGTCTCAATTAGCTGTAAGT 360 consensus_3330#1 ------------------------------------------------------------ consensus_3330#0 GATTAGCGCTTTCCGTGTATTGCTACAATCGTTTCAACACAACCGAGCAAAACCAGCATC 420 consensus_3330#1 ------------------------------AGGCCAAGA--ATCCCGCACGAGTGGTATC 28 *** * * * *** * * *** consensus_3330#0 GTCACCATCATCATCAGCACCATCGAAATCGACACCAACCAACATGGTTTACGTCTCCAC 480 consensus_3330#1 GTCACCATCATCATCAGCACCATCGAAATCGACACCAACCAACATGGTTTACGTCTCCAC 88 ************************************************************ consensus_3330#0 CCGTTCGACCACGCTATGGATGCTACTACTAC-TGCTGCAGAACCTTGTCACAATCAA-A 538 consensus_3330#1 CCGTTCGACCACGCTATGGATGCTACTACTACGTGCTGCAGAACCTTGTCACAATCAAGA 148 ******************************** ************************* * consensus_3330#0 TCATTCGAAGTGTACTGGAACATACCGACCTTCATGTGCAATCAGTTTGGCTTCGAGTTT 598 consensus_3330#1 TCATTCGAAGTGTACTGGAACATACCGACCTTCATGTGCAATCAGTTTGGCTTCGAGTTT 208 ************************************************************ consensus_3330#0 AGCAGTGTCAACCGGACGTACTCGGTCGTGCAA-AACCGAAACGATACCTTCCGTGGCAA 657 consensus_3330#1 AGCAGTGTCAACCGGACGTACTCGGTCGTGCAAGAACCGAAACGATACCTTCCGTGGCAA 268 ********************************* ************************** consensus_3330#0 CGCCGTCTCG-ATACTGTACGATCCGGGCAAGTTCCC--GGCCCTGCT-CGAGAAACCGT 713 consensus_3330#1 CGCCGTCTCGGATACTGTACGATCCGGGCAAGATTCCCGGGCCCTGCNTCGAGAAACCGT 328 ********** ********************* * ** ******** *********** consensus_3330#0 CCACCAAAACGCTCTAC-AAGCGTAACGGTGGTGTGCCGCAGGAGGGCAACCT-GACCGA 771 consensus_3330#1 CCAGCAAAACGCTCTACGAAGCGTAACGGTGGTGTGCCGCAGGAGGGCAACCTTGACCGA 388 *** ************* *********************************** ****** consensus_3330#0 GCATCTGGAGATATTCGAGCGCCATCTGGACGAGCTGATACCGGATCGCAATTTCAGCGG 831 consensus_3330#1 ------------------------------------------------------------ consensus_3330#0 TATCGGCATCATCGACTTCGAGTCCTGGCGGCCCATCTACCGGCAGAACTTTGGCTCGCT 891 consensus_3330#1 ------------------------------------------------------------ consensus_3330#0 CCAACCGTACAAGGATCTGTCGGTCAAGATCGAACGCGAACGACACCCGTACTGGTCGGG 951 consensus_3330#1 ------------------------------------------------------------ consensus_3330#0 CAACCATCTCGAACGGGAGGCGACCCGTCGATTCGAAGCAACAGGGCGCGAGTTTATGGA 1011 consensus_3330#1 ------------------------------------------------------------ consensus_3330#0 GCAAACGCTACTGCTAGCGAAACAGCGACGACCCCAAGCGGCCTGGGGTTACTATGCCTT 1071 consensus_3330#1 ------------------------------------------------------------ consensus_3330#0 TCCCTACTGCTTCAACATGAACGGTGCGGCTAGCACTCGCTCGGAAAACTGTTCACCGGA 1131 consensus_3330#1 ------------------------------------------------------------ consensus_3330#0 AGTGCAGCGAGAAAACAACCGCATCATGTGGCTGTTCGATGGATCGGACATCATCTTCCC 1191 consensus_3330#1 ------------------------------------------------------------ consensus_3330#0 ATCTGTCTATCTGCGGGAAAAGCTATCACCAAGCGAACGGGAGCAGCTAAT 1242 consensus_3330#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||