cluster # 3335

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Anopheles gambiae
cluster # 3335 cluster # 3335 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3335#0 length = 1045 sequences # 2

consensus_3335#1 length = 314 sequences # 1

consensusID : consensus_3335#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1045
fasta sequence

                              [AACCTTGAAGACAACCACTCTCTGGTGGATGGGTCCGACGTTCCTCCAGAGAGCCGATTACGACGTAGAGATTCCGGAAGATCTTCCTGACGAAATCGTTCCAGAATTGAGAGCGTCACCCGTCGTTGCAGCGCTGGTTGTCAATCAAGACAAACTACCCGTGTTCTTGAAGTTTAGCTCTTTTCGAAAACTGCAACGAGTGATTGCTCTAGTTCAACGCTTCATCCTGAATTGTCGACAAAGAGACGTTTCAAAGCGTGTAACCTGCCAACATTGTACCATCACCGAACTTCGAAGCGCTTTAAACGTCATTGTAAAGGTCATTCAACATGAGGCTCTTTCTGACGAAATCCACCGAGTGAAGGCTAATGAGCCGTGTAAGCGGATTCAAGCTCTGCATCCGTTCATCATCGACGAGATTCTGCGAGTCGGAGGAAGACTCCAGAATTCCAAATCTACCACTGTCCAGTAAACATCAAATCTTGCTACCAAAGCATCCCATCACCGATCTCATCATCTTGACGTTTCACCAAGAGCTCATGCATGCGGGTCCCTCCGGTCTCCTAGCGGCGCTTCGATTGAAG-TTTGGCTGCTAGATGGACGATCATCAGTCCGTAAGATCACCCCGATCCTGTGTCCGNTGTTTTCCGATCGAAGCCTCGAAGTT-CAGCCAGNTGATGGGCATCCTGCCGTCATGTCAAGTGACTCAAGCCCATCCGTTCGAGAAAACAGGAATAGACTACGCTGGTCCGGTATGGGTCAAGGAGGGCCGATACAAACCTCGCCTTGTGAAGGCTTACATTGCTGTCTTTGTCTGCATGGCAACGAAGGCGGTACACTTGGAGTTAGTCTCGGACATGTCGAGCGAGACTTTCCTTGCTGCATTTCATCGATTTACTAGTCGACGCGGCTTGAGCAAGGAAATCTTTTCGGACAATGGATGTAATTTCAAGGGGGCTAGTTCGGAACTACATGAGCTGTACCAACTATTTCAAACCCGAACGACCGTCGACGAGATCGAGAAATATTGTCAGCCAAAGGAGAT]

[+] EMBL BX627121             [AACCTTGAAGACAACCACTCTCTGGTGGATGGGTCCGACGTTCCTCCAGAGAGCCGATTACGACGTAGAGATTCCGGAAGATCTTCCTGACGAAATCGTTCCAGAATTGAGAGCGTCACCCGTCGTTGCAGCGCTGGTTGTCAATCAAGACAAACTACCCGTGTTCTTGAAGTTTAGCTCTTTTCGAAAACTGCAACGAGTGATTGCTCTAGTTCAACGCTTCATCCTGAATTGTCGACAAAGAGACGTTTCAAAGCGTGTAACCTGCCAACATTGTACCATCACCGAACTTCGAAGCGCTTTAAACGTCATTGTAAAGGTCATTCAACATGAGGCTCTTTCTGACGAAATCCACCGAGTGAAGGCTAATGAGCCGTGTAAGCGGATTCAAGCTCTGCATCCGTTCATCATCGACGAGATTCTGCGAGTCGGAGGAAGACTCCAGAATTCCAAATCTACCACTGTCCAGTAAACATCAAATCTTGCTACCAAAGCATCCCATCACCGATCTCATCATCTTGACGTTTCACCAAGAGCTCATGCATGCGGGTCCCTCCGGTCTCCTAGCGGCGCTTCGATTGAAG TTTGGCTGCTAGATGGACGATCATCAGTCCGTAAGATCACCCCGATCCTGTGTCCGNTGTTTTCCGATCGAAGCCTCGAAGTT CAGCCAGNTGATGGGCATCCTGCCGTCAT                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM623069             [                                                                                                                                                                                                                                                                                                                                                                                                                                              ccgGGAAGACTCCAGAATTCC AATCTACCACTGTCCAGTAAACATCAAATCTTGCTACCAAAGCATCCCATCACCGATCTCATCATCTTGACGTTTCACCAAGAGCTCATGCATGCGGGTCCCTCCGGTCTCCTAGCGGCGCTTCGATTGAAGTTTTGGCTGCTAGATGGACGATCATCAGTCCGTAAGATCA CCCGATCCTGTGTCCGTTG TTTCCGATCGAAGCCTCGAAGTTCCAGCCAGTTGATGGGCATCCTGCCGTCATGTCAAGTGACTCAAGCCCATCCGTTCGAGAAAACAGGAATAGACTACGCTGGTCCGGTATGGGTCAAGGAGGGCCGATACAAACCTCGCCTTGTGAAGGCTTACATTGCTGTCTTTGTCTGCATGGCAACGAAGGCGGTACACTTGGAGTTAGTCTCGGACATGTCGAGCGAGACTTTCCTTGCTGCATTTCATCGATTTACTAGTCGACGCGGCTTGAGCAAGGAAATCTTTTCGGACAATGGATGTAATTTCAAGGGGGCTAGTTCGGAACTACATGAGCTGTACCAACTATTTCAAACCCGAACGACCGTCGACGAGATCGAGAAATATTGTCAGCCAAAGGAGAT]




>consensus_3335#0
AACCTTGAAGACAACCACTCTCTGGTGGATGGGTCCGACGTTCCTCCAGAGAGCCGATTA
CGACGTAGAGATTCCGGAAGATCTTCCTGACGAAATCGTTCCAGAATTGAGAGCGTCACC
CGTCGTTGCAGCGCTGGTTGTCAATCAAGACAAACTACCCGTGTTCTTGAAGTTTAGCTC
TTTTCGAAAACTGCAACGAGTGATTGCTCTAGTTCAACGCTTCATCCTGAATTGTCGACA
AAGAGACGTTTCAAAGCGTGTAACCTGCCAACATTGTACCATCACCGAACTTCGAAGCGC
TTTAAACGTCATTGTAAAGGTCATTCAACATGAGGCTCTTTCTGACGAAATCCACCGAGT
GAAGGCTAATGAGCCGTGTAAGCGGATTCAAGCTCTGCATCCGTTCATCATCGACGAGAT
TCTGCGAGTCGGAGGAAGACTCCAGAATTCCAAATCTACCACTGTCCAGTAAACATCAAA
TCTTGCTACCAAAGCATCCCATCACCGATCTCATCATCTTGACGTTTCACCAAGAGCTCA
TGCATGCGGGTCCCTCCGGTCTCCTAGCGGCGCTTCGATTGAAGTTTGGCTGCTAGATGG
ACGATCATCAGTCCGTAAGATCACCCCGATCCTGTGTCCGNTGTTTTCCGATCGAAGCCT
CGAAGTTCAGCCAGNTGATGGGCATCCTGCCGTCATGTCAAGTGACTCAAGCCCATCCGT
TCGAGAAAACAGGAATAGACTACGCTGGTCCGGTATGGGTCAAGGAGGGCCGATACAAAC
CTCGCCTTGTGAAGGCTTACATTGCTGTCTTTGTCTGCATGGCAACGAAGGCGGTACACT
TGGAGTTAGTCTCGGACATGTCGAGCGAGACTTTCCTTGCTGCATTTCATCGATTTACTA
GTCGACGCGGCTTGAGCAAGGAAATCTTTTCGGACAATGGATGTAATTTCAAGGGGGCTA
GTTCGGAACTACATGAGCTGTACCAACTATTTCAAACCCGAACGACCGTCGACGAGATCG
AGAAATATTGTCAGCCAAAGGAGAT

consensusID : consensus_3335#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGAGCCTATCTTCTCGCAAGGTTGATCTCCAAGGTTGCTGGGTCCATCGATCTTCACCTCCGCAACATCATACTCTGGACTGACAGCCAGATTGTCCTTGCTTGGCTGAAGAAACCACTTGCAACCCTGCAAGTGTTTGTGCGAAATCGAAGTGAAAAAATTCGCAACCTTACCGAACCGCTGGACGTACAATGGAAGTACATTTCAACGAAGGAAAATCCAGCTGACATCGTGTCTCGAGGTCTTCTGCCAGAAACCTTGAAGACAACCACTCTCTGGTGGATGGG]

[+] EMBL BM632766             [CCGCCCACGCGTCCGCCCACGCGTCCGGGAGCCTATCTTCTCGCAAGGTTGATCTCCAAGGTTGCTGGGTCCATCGATCTTCACCTCCGCAACATCATACTCTGGACTGACAGCCAGATTGTCCTTGCTTGGCTGAAGAAACCACTTGCAACCCTGCAAGTGTTTGTGCGAAATCGAAGTGAAAAAATTCGCAACCTTACCGAACCGCTGGACGTACAATGGAAGTACATTTCAACGAAGGAAAATCCAGCTGACATCGTGTCTCGAGGTCTTCTGCCAGAAACCTTGAAGACAACCACTCTCTGGTGGATGGG]




>consensus_3335#1
CCGCCCACGCGTCCGCCCACGCGTCCGGGAGCCTATCTTCTCGCAAGGTTGATCTCCAAG
GTTGCTGGGTCCATCGATCTTCACCTCCGCAACATCATACTCTGGACTGACAGCCAGATT
GTCCTTGCTTGGCTGAAGAAACCACTTGCAACCCTGCAAGTGTTTGTGCGAAATCGAAGT
GAAAAAATTCGCAACCTTACCGAACCGCTGGACGTACAATGGAAGTACATTTCAACGAAG
GAAAATCCAGCTGACATCGTGTCTCGAGGTCTTCTGCCAGAAACCTTGAAGACAACCACT
CTCTGGTGGATGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3335#0      AACCTTGAAGACAACCACTCTCTGGTGGATGGGTCCGACGTTCCTCCAGAGAGCCGATTA 60
consensus_3335#1      ------------------------------------------------------------
                                                                                  

consensus_3335#0      CGACGTAGAGATTCCGGAAGATCTTCCTGACGAAATCGTTCCAGAATTGAGAGCGTCACC 120
consensus_3335#1      ------------------------------------------------------------
                                                                                  

consensus_3335#0      CGTCGTTGCAGCGCTGGTTGTCAATCAAGACAAACTACCCGTGTTCTTGAAGTTTAGCTC 180
consensus_3335#1      ------------------------------------------------------------
                                                                                  

consensus_3335#0      TTTTCGAAAACTGCAACGAGTGATTGCTCTAGTTCAACGCTTCATCCTGAATTGTCGACA 240
consensus_3335#1      ------------------------------------------------------------
                                                                                  

consensus_3335#0      AAGAGACGTTTCAAAGCGTGTAACCTGCCAACATTGTACCATCACCGAACTTCGAAGCGC 300
consensus_3335#1      ------------------------------------------------------------
                                                                                  

consensus_3335#0      TTTAAACGTCATTGTAAAGGTCATTCAACATGAGGCTCTTTCTGACGAAATCCACCGAGT 360
consensus_3335#1      ------------------------------------------------------------
                                                                                  

consensus_3335#0      GAAGGCTAATGAGCCGTGTAAGCGGATTCAAGCTCTGCATCCGTTCATCATCGACGAGAT 420
consensus_3335#1      ---------------------------------------------------------CCG 3
                                                                                  

consensus_3335#0      TCTGCGAGTCGGAGGAAGACTCCAGAATTCCAAATCTACCACTGTCCAGTAAACATCAAA 480
consensus_3335#1      CCCACGCGTCCGCCCACGCGTCCGGGAGCCT--ATCTTCT--CGCAAGGTTGATCTCCAA 59
                       *  ** *** *   * *  *** * *  *   **** *    *    **  *  ** **

consensus_3335#0      TCTTGCTA---CCAAAGCATCCCATCACCGATCTCATCATCTTGACGTTTCACCAAGAGC 537
consensus_3335#1      GGTTGCTGGGTCCATCGATCTTCACCTCCG-CAACATCATACTCTGGACTGACAGCCAGA 118
                        *****    ***  *     ** * ***    ******  *   *  * **    ** 

consensus_3335#0      TCATGCATGCGGGTCCCTCCGGTCTCCTAGCGGCGCTTCGATTGAAGTTTGGCTGCTAGA 597
consensus_3335#1      TTGTCCTTGCTTGGCTGAAGAAACCACTTGCAACCCTGCAAGTG---TTTG--TGCGAAA 173
                      *  * * ***  * *        *  ** **  * ** * * **   ****  *** * *

consensus_3335#0      TGGACGATCATCAGTCCGTAAGATCACCCCGATCCTGTGTCCGNTGTTTTCCGATCGAAG 657
consensus_3335#1      TCGAAGTGAAAAAATTCGCAACCTTACC--GAACCGCTGGACGTA------CAATGGAAG 225
                      * ** *   *  * * ** **  * ***  ** **  **  **        * ** ****

consensus_3335#0      CCTCGAAGTTCAGCCAGNTGATGGGCATCCTGCCGTCATGTCAAGTGACTCAAGCCCATC 717
consensus_3335#1      TAC---ATTTCAACGAAG----GAAAATCCAGCTGACAT----CGTGTCTCGAGGTCTTC 274
                            * **** * *      *   **** ** * ***     *** *** **  * **

consensus_3335#0      CGTTCGAGAAAACAGGAATAGACTACGCTGGTCCGGTATGGGTCAAGGAGGGCCGATACA 777
consensus_3335#1      TGCCAGAAACCTTGAAGACA-ACCACTCTCTGGTGG-ATGGG------------------ 314
                       *   ** *        * * ** ** **     ** *****                  

consensus_3335#0      AACCTCGCCTTGTGAAGGCTTACATTGCTGTCTTTGTCTGCATGGCAACGAAGGCGGTAC 837
consensus_3335#1      ------------------------------------------------------------
                                                                                  

consensus_3335#0      ACTTGGAGTTAGTCTCGGACATGTCGAGCGAGACTTTCCTTGCTGCATTTCATCGATTTA 897
consensus_3335#1      ------------------------------------------------------------
                                                                                  

consensus_3335#0      CTAGTCGACGCGGCTTGAGCAAGGAAATCTTTTCGGACAATGGATGTAATTTCAAGGGGG 957
consensus_3335#1      ------------------------------------------------------------
                                                                                  

consensus_3335#0      CTAGTTCGGAACTACATGAGCTGTACCAACTATTTCAAACCCGAACGACCGTCGACGAGA 1017
consensus_3335#1      ------------------------------------------------------------
                                                                                  

consensus_3335#0      TCGAGAAATATTGTCAGCCAAAGGAGAT 1045
consensus_3335#1      ----------------------------