cluster # 3336

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3336 cluster # 3336 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3336#0 length = 743 sequences # 1

consensus_3336#1 length = 352 sequences # 2

consensusID : consensus_3336#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 743
fasta sequence

                              [ACGGCCAAATTCAAACGCTGCGAATAGATTCCTCCAGCAATCACAATGTGAATAATCGACCGAAAAAGCCCGAATCGGTCAAACCACAGATTTACGCGTGTGAGGTGTGCGGCAAGACGTTCAAAACGAAATCCAACTACACCAACCACCGGAAAACGCACAACTGGAGTGAGGCTACTGTCGCGCCAAACAGCACGCCCGTCCAGCAGTCCATGTCCGAGCAGAAGCGTATTTATCTGTGCAACATCTGCGGCCATAACTGTGGCTCGTCCAGCAACTTGAGCGTCCATTTGCGACGCCACAACGGCCAAGCGTGTGCGAGTGTACGGTGTGCGGGAAAGGCTTTCCACGTCGGTCCGATCTCGTGATGCATATGCGCAAGCATACGGGTGAAAAACCGTACGTCTGCCCTACTTGTGGGCGTGGATTTTCACGGCTGGATAAGCTTCGCATCCACATTCGCACACACACGGGAGAGAAACCGTACCGGTGCCCCTGCGGACGGGGATATGCACAGAAAAACGATCTAAAAACACACCAAAAACGCAACATTTGCGGACAAAACTTTGACGTTGAAAAACTACTCGCGCCCCGGCCGACAACGATCTGCATCAAATCTCCGCCGCGTCAGTCGGCACAGTCCTCCGCTGCAGCGCCTTCCACAGCACAGCGCCAACGCCATCCATCACATACTCATCGTAGAGACGCTGCACTGANTTCGAGCACGAACGATGGANGACTTG]

[+] EMBL CF542095             [ACGGCCAAATTCAAACGCTGCGAATAGATTCCTCCAGCAATCACAATGTGAATAATCGACCGAAAAAGCCCGAATCGGTCAAACCACAGATTTACGCGTGTGAGGTGTGCGGCAAGACGTTCAAAACGAAATCCAACTACACCAACCACCGGAAAACGCACAACTGGAGTGAGGCTACTGTCGCGCCAAACAGCACGCCCGTCCAGCAGTCCATGTCCGAGCAGAAGCGTATTTATCTGTGCAACATCTGCGGCCATAACTGTGGCTCGTCCAGCAACTTGAGCGTCCATTTGCGACGCCACAACGGCCAAGCGTGTGCGAGTGTACGGTGTGCGGGAAAGGCTTTCCACGTCGGTCCGATCTCGTGATGCATATGCGCAAGCATACGGGTGAAAAACCGTACGTCTGCCCTACTTGTGGGCGTGGATTTTCACGGCTGGATAAGCTTCGCATCCACATTCGCACACACACGGGAGAGAAACCGTACCGGTGCCCCTGCGGACGGGGATATGCACAGAAAAACGATCTAAAAACACACCAAAAACGCAACATTTGCGGACAAAACTTTGACGTTGAAAAACTACTCGCGCCCCGGCCGACAACGATCTGCATCAAATCTCCGCCGCGTCAGTCGGCACAGTCCTCCGCTGCAGCGCCTTCCACAGCACAGCGCCAACGCCATCCATCACATACTCATCGTAGAGACGCTGCACTGANTTCGAGCACGAACGATGGANGACTTG]




>consensus_3336#0
ACGGCCAAATTCAAACGCTGCGAATAGATTCCTCCAGCAATCACAATGTGAATAATCGAC
CGAAAAAGCCCGAATCGGTCAAACCACAGATTTACGCGTGTGAGGTGTGCGGCAAGACGT
TCAAAACGAAATCCAACTACACCAACCACCGGAAAACGCACAACTGGAGTGAGGCTACTG
TCGCGCCAAACAGCACGCCCGTCCAGCAGTCCATGTCCGAGCAGAAGCGTATTTATCTGT
GCAACATCTGCGGCCATAACTGTGGCTCGTCCAGCAACTTGAGCGTCCATTTGCGACGCC
ACAACGGCCAAGCGTGTGCGAGTGTACGGTGTGCGGGAAAGGCTTTCCACGTCGGTCCGA
TCTCGTGATGCATATGCGCAAGCATACGGGTGAAAAACCGTACGTCTGCCCTACTTGTGG
GCGTGGATTTTCACGGCTGGATAAGCTTCGCATCCACATTCGCACACACACGGGAGAGAA
ACCGTACCGGTGCCCCTGCGGACGGGGATATGCACAGAAAAACGATCTAAAAACACACCA
AAAACGCAACATTTGCGGACAAAACTTTGACGTTGAAAAACTACTCGCGCCCCGGCCGAC
AACGATCTGCATCAAATCTCCGCCGCGTCAGTCGGCACAGTCCTCCGCTGCAGCGCCTTC
CACAGCACAGCGCCAACGCCATCCATCACATACTCATCGTAGAGACGCTGCACTGANTTC
GAGCACGAACGATGGANGACTTG

consensusID : consensus_3336#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 352
fasta sequence

                              [CTCCGCCGCGTCAGTCGGCACAGTCCTCCGCTGCAGCGCCTTCCCACAGCACAGCGCCAAACGCCATTCCATCAACATACTCCATCCGTAGAGACGCTGCACTGAATCTCGAGCACGAACCGATGGAGGACATGGTGTTCCCGGGCAGCTGGGCCAATTGCCACACGACGCCACACCATTTCCAACATCACGAAAGAGATGNNACGGATGGTTATGAGGACGGCAGCTCGTACACGCACCAGTCAAACTTACAGCGTGATAGGAAATGTGCGCGGAGCACAAACAAACAAAAACCTCCCAAAAGTGTGACCAAAACCCACAAAAACAAAGCCATGAGTAAGAGCAAAAAAAA]

[+] EMBL BX620728             [CTCCGCCGCGTCAGTCGGCACAGTCCTCCGCTGCAGCGCCTTCCCACAGCACAGCGCCAAACGCCATTCCATCAACATACTCCATCCGTAGAGACGCTGCACTGAATCTCGAGCACGAACCGATGGAGGACATGGTGTTCCCGGGCAGCTGGGCCAATTGCCACACGACGCCACACCATTTCCAACATCACGAAAGAGATGNNACGGATGGTTATGAGGACGGCAGCTCGTACACGCACC                                                                                                                ]
[-] EMBL CNS08XHK             [                                                                                                                                                                                      CAACATCACGAAAGAGATGCAACGGATGGTTATGAGGACGGCAGCTCGTACACGCACCAGTCAAACTTACAGCGTGATAGGAAATGTGCGCGGAGCACAAACAAACAAAAACCTCCCAAAAGTGTGACCAAAACCCACAAAAACAAAGCCATGAGTAAGAGCAAAAAAAA]




>consensus_3336#1
CTCCGCCGCGTCAGTCGGCACAGTCCTCCGCTGCAGCGCCTTCCCACAGCACAGCGCCAA
ACGCCATTCCATCAACATACTCCATCCGTAGAGACGCTGCACTGAATCTCGAGCACGAAC
CGATGGAGGACATGGTGTTCCCGGGCAGCTGGGCCAATTGCCACACGACGCCACACCATT
TCCAACATCACGAAAGAGATGNNACGGATGGTTATGAGGACGGCAGCTCGTACACGCACC
AGTCAAACTTACAGCGTGATAGGAAATGTGCGCGGAGCACAAACAAACAAAAACCTCCCA
AAAGTGTGACCAAAACCCACAAAAACAAAGCCATGAGTAAGAGCAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3336#0      ACGGCCAAATTCAAACGCTGCGAATAGATTCCTCCAGCAATCACAATGTGAATAATCGAC 60
consensus_3336#1      ------------------------------------------------------------
                                                                                  

consensus_3336#0      CGAAAAAGCCCGAATCGGTCAAACCACAGATTTACGCGTGTGAGGTGTGCGGCAAGACGT 120
consensus_3336#1      ------------------------------------------------------------
                                                                                  

consensus_3336#0      TCAAAACGAAATCCAACTACACCAACCACCGGAAAACGCACAACTGGAGTGAGGCTACTG 180
consensus_3336#1      ------------------------------------------------------------
                                                                                  

consensus_3336#0      TCGCGCCAAACAGCACGCCCGTCCAGCAGTCCATGTCCGAGCAGAAGCGTATTTAT-CTG 239
consensus_3336#1      ----------CTCCGC-CGCGTCAGTCGGCACAGTCCTCCGCTGCAGCGCCTTCCCACAG 49
                                *  * * * ****   * *  **   *   ** * ****  **    * *

consensus_3336#0      TGCAACATCTGCGGCCATAACTGTGGCTCGTCCAGCAACTTGAGCGTCCATTTGCGACGC 299
consensus_3336#1      CACAGCGCCAAACGCCAT------------TCCATCAACATAC---TCCATCCGTAGAGA 94
                        ** *  *    *****            **** **** *     *****  *    * 

consensus_3336#0      CACAACGGCCAAGCGTGTGCGAGTGTACGGTGTGCGGGAAAGGCTTTCCACGTCGGTCCG 359
consensus_3336#1      CGCTGCACTGAATCTCGAGCACGAAC-CGATG-GAGGACATGGTGTTCCCGGGCAGCTGG 152
                      * *  *    ** *  * **  *    ** ** * **  * **  ****  * * *   *

consensus_3336#0      ATCTCGTGATGCATATGCGCAAGCATACGGGTGAAAAACCGTACGTCTGCCCTACTTGTG 419
consensus_3336#1      GCCAATTGCCACACG-ACGCCACACCATTTCCAACATCACGAAAGAG-ATGNNACGGATG 210
                        *   **   **    *** *    *      * *   ** * *        **   **

consensus_3336#0      GGCGTGGATTTTCACGGCTGGATAAGCTTCGCATCCACATTCGCACACACACGGGAGAGA 479
consensus_3336#1      GTTATGAGGACG-GCAGCTCG-TACACGCACCAGTCAAACTTACA-----GCGTGATAGG 263
                      *   **        * *** * **  *    **  ** * *  **      ** ** ** 

consensus_3336#0      AACCGTAC-CGGTGCCCCTGCGGACGGGGATATGCACAGAAAAACGATCTAAAAACACAC 538
consensus_3336#1      AAATGTGCGCGGAGCACAAACAAACAAAAACCT-CCCAAAAGTGTGACCAAAACCCACAA 322
                      **  ** * *** ** *   *  **    *  * * ** **    ** * ***  **** 

consensus_3336#0      CAAAAACGCAACATTTGCGGACAAAACTTTGACGTTGAAAAACTACTCGCGCCCCGGCCG 598
consensus_3336#1      AAACAAAGCCATGAGTAAGAGCAAAAAAAA------------------------------ 352
                       ** ** ** *    *  *  *****                                  

consensus_3336#0      ACAACGATCTGCATCAAATCTCCGCCGCGTCAGTCGGCACAGTCCTCCGCTGCAGCGCCT 658
consensus_3336#1      ------------------------------------------------------------
                                                                                  

consensus_3336#0      TCCACAGCACAGCGCCAACGCCATCCATCACATACTCATCGTAGAGACGCTGCACTGANT 718
consensus_3336#1      ------------------------------------------------------------
                                                                                  

consensus_3336#0      TCGAGCACGAACGATGGANGACTTG 743
consensus_3336#1      -------------------------