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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence
[CCCCGAGGTTAAATTCAATGTCGGCAGTAGGTTTAATTAAACAAAAAATCCCCATACCCGGATAAATGCTGCTCATTATTGAATACATTTTAAGCAATAATACCATTGCGTATCATTTTTCTACAGCCGGACCGGAGGCAATTTTCCCATTAACATCATCATTCGGTAGAGATCACCGTCGCTNTGCTGCACGATTGTTAATTATCCTCGCTGCTCGTTATGGAGTTACGGAACCATTNNTAATCTGTTTACTTGCGTTTGCTTTTGCGTCTCCATGTTACCTACCCGAATGCAGGATCGTACCTTTAATGACATCGGAATGAGCAAGGTGCATCGGCATTTTATATCACCTCCCCCGTGTGCAGGGGACCGGAAGTTGAATGGGCAAGTGTACGTATATATATGNNTTATNTATATCGCNTCGTCTCACCCACCATGTTCGATTCCTTTTGTCTGTACGCCGAGACCGAATTATCGGCGCTCGTTCGCTCGC]
[+] EMBL AL694429 [CCCCGAGGTTAAATTCAATGTCGGCAGTAGGTTTAATTAAACAAAAAATCCCCATACCCGGATAAATGCTGCTCATTATTGAATACATTTTAAGCAATAATACCATTGCGTATCATTTTTCTACAGCCGGACCGGAGGCAATTTTCCCATTAACATCATCATTCGGTAGAGATCACCGTCGCTNTGCTGCACGATTGTTAATTATCCTCGCTGCTCGTTATGGAGTTACGGAACCATTNNTAATCTGTTTACTTGCGTTTGCTTTTGCGTCTCCATGTTACCTACCCGAATGCAGGATCGTACCTTTAATGACATCGGAATGAGCAAGGTGCATCGGCATTTTATATCACCTCCCCCGTGTGCAGGGGACCGGAAGTTGAATGGGCAAGTGTACGTATATATATGNNTTATNTATATCGCNTCGTCTCACCCACCATGTTCGATTCCTTTTGTCTGTACGCCGAGACCGAATTATCGGCGCTCGTTCGCTCGC]
consensusID : consensus_3342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[GTTTGCTTTTGCGTCTCCATGTTCCTCCCGAATGCGGATCGTCCTTTAATGACATCGGAATGAGCAAGGTGCATCGGCATTTTTTCACCTCCCCCGTGTGCGGGGCCGGAAGTTGAATGGGAAGTGTTCGTTATTTTTTTTTTCGCTCGTCTCCCCACCATGTTCGATTCCTTTTGTCTGTACGCCGAGACCGAATTATCGGCGCTCGTTCGCTCGCTCTTTGTCCCGCACACGCTCCTGTGCGCTGATAAATAAATAATGCTCTCCCCCCGTTAGGTTCGTAAAATTAATCT]
[+] EMBL CNS08V54 [GTTTGCTTTTGCGTCTCCATGTTCCTCCCGAATGCGGATCGTCCTTTAATGACATCGGAATGAGCAAGGTGCATCGGCATTTTTTCACCTCCCCCGTGTGCGGGGCCGGAAGTTGAATGGGAAGTGTTCGTTATTTTTTTTTTCGCTCGTCTCCCCACCATGTTCGATTCCTTTTGTCTGTACGCCGAGACCGAATTATCGGCGCTCGTTCGCTCGCTCTTTGTCCCGCACACGCTCCTGTGCGCTGATAAATAAATAATGCTCTCCCCCCGTTAGGTTCGTAAAATTAATCT]
consensusID : consensus_3342#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence
[ACATCGGAATGAGCAAGGTGCATCGGCATTTTTTCACCTCCCCCTTGTGCTGGGCCGGAAGTTGAATGGGAAGTGTTCGTTTTTTTTGCGCTCGTCTCCCCACCATGTTGGATTCCTTTTGTCTGTACAGCGAGACCGAATTATCAGCGCTCGTTCGCTCGCTCTTTGTCCCGCACACGCTCCTGTGCAGTGATAAATAAATAATGCTCTCCCCCCCACCCGTTAGGGTCGTAAATTTTTAAAAAAAA]
[-] EMBL AGA280029 [ACATCGGAATGAGCAAGGTGCATCGGCATTTTTTCACCTCCCCCTTGTGCTGGGCCGGAAGTTGAATGGGAAGTGTTCGTTTTTTTTGCGCTCGTCTCCCCACCATGTTGGATTCCTTTTGTCTGTACAGCGAGACCGAATTATCAGCGCTCGTTCGCTCGCTCTTTGTCCCGCACACGCTCCTGTGCAGTGATAAATAAATAATGCTCTCCCCCCCACCCGTTAGGGTCGTAAATTTTTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3342#1 ------------------------------------------------------------
consensus_3342#2 ------------------------------------------------------------
consensus_3342#0 CCCCGAGGTTAAATTCAATGTCGGCAGTAGGTTTAATTAAACAAAAAATCCCCATACCCG 60
consensus_3342#1 ------------------------------------------------------------
consensus_3342#2 ------------------------------------------------------------
consensus_3342#0 GATAAATGCTGCTCATTATTGAATACATTTTAAGCAATAATACCATTGCGTATCATTTTT 120
consensus_3342#1 ------------------------------------------------------------
consensus_3342#2 ------------------------------------------------------------
consensus_3342#0 CTACAGCCGGACCGGAGGCAATTTTCCCATTAACATCATCATTCGGTAGAGATCACCGTC 180
consensus_3342#1 ------------------------------------------------------------
consensus_3342#2 ------------------------------------------------------------
consensus_3342#0 GCTNTGCTGCACGATTGTTAATTATCCTCGCTGCTCGTTATGGAGTTACGGAACCATTNN 240
consensus_3342#1 ----------------GTTTGCTTTTGCGTCTCCATGTTCCTCCCGAATGCGGATCGTC- 43
consensus_3342#2 ------------------------------------------------------------
consensus_3342#0 TAATCTGTTTACTTGCGTTTGCTTTTGCGTCTCCATGTTACCTACCCGAATGCAGGATCG 300
consensus_3342#1 ---CTTTAATGACATCGGAATGAGCAAGGTGCATCGGCATTTTTT--CACCTCCCCCGTG 98
consensus_3342#2 -----------ACATCGGAATGAGCAAGGTGCATCGGCATTTTTT--CACCTCCCCCTTG 47
consensus_3342#0 TACCTTTAATGACATCGGAATGAGCAAGGTGCATCGGCATTTTATATCACCTCCCCCGTG 360
******************************** * ********** **
consensus_3342#1 TGCGGGG--CCGGAAGTTGAATGGG-AAGTGTTCGT---------TATTTTTTTTTTCGC 146
consensus_3342#2 TGCTGGG--CCGGAAGTTGAATGGG-AAGTGTTCGT---------T----TTTTTTGCGC 91
consensus_3342#0 TGCAGGGGACCGGAAGTTGAATGGGCAAGTGTACGTATATATATGNNTTATNTATATCGC 420
*** *** **************** ****** *** * * * ***
consensus_3342#1 T-CGTCTC-CCCACCATGTTCGATTCCTTTTGTCTGTACGCCGAGACCGAATTATCGGCG 204
consensus_3342#2 T-CGTCTC-CCCACCATGTTGGATTCCTTTTGTCTGTACAGCGAGACCGAATTATCAGCG 149
consensus_3342#0 NTCGTCTCACCCACCATGTTCGATTCCTTTTGTCTGTACGCCGAGACCGAATTATCGGCG 480
****** *********** ****************** *************** ***
consensus_3342#1 CTCGTTCGCTCGCTCTTTGTCCCGCACACGCTCCTGTGCGCTGATAAATAAATAATGCTC 264
consensus_3342#2 CTCGTTCGCTCGCTCTTTGTCCCGCACACGCTCCTGTGCAGTGATAAATAAATAATGCTC 209
consensus_3342#0 CTCGTTCGCTCGC----------------------------------------------- 493
*************
consensus_3342#1 TCCCCCC-----GTTAGGTTCGTAAAATTAATCT----- 293
consensus_3342#2 TCCCCCCCACCCGTTAGGGTCGTAAATTTTTAAAAAAAA 248
consensus_3342#0 ---------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||