cluster # 3345

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3345 cluster # 3345 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3345#0 length = 627 sequences # 2

consensus_3345#1 length = 294 sequences # 1

consensusID : consensus_3345#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 627
fasta sequence

                              [GTAACACACGGTGAAAACAGTGCAGCAAAACCGATAATATTCACTTAATTATACAGGCACAGGCGTAGCCAACAATATTTTAAAGTTGTTAAGTAACGTAGGAAAGCAGTATGGCACCTTATTTGTGTGGAAGGATGTTTTTTAAACTATGCAGTACTTTACTTTATTCCTCCACATTAAGAGATATGCGAAGGATATCAGAATGGATAGAATAAACTGATGACAGCAACATCCATTGTAGATTATAAGAATATGTGCTCATGGCTACAATATTATACTGGAGACTATTGATTCACAGATCACTCAATTTTTACCTCTATACAAACCATATTAATGAATATAACAACCACTCACTTACATTTAATGTGTATCTTTTCAATATCTAAGCCCCTTTGAAAGTTCATTGAATGTTAAAAATCCTCCAACGTAGCGGGTGAAAGCCCTTAGCGCAGGAGTGAACAAACAGCCGAGAACAAAAACAGAAAACAAACAATACACATTTACATATTATACTTTCACAAGCCAAAAAAGTATATCACATCCAACCTTGNACATTTAGCCTATATAGTACATGTATTACACAGCAGTTGTTGATTGGATTCGTTCTGAAAGCGAGATAAAAACTGA]

[+] EMBL AGA281767            [GTAACACACGGTGAAAACAGTGCAGCAAAACCGATAATATTCACTTAATTATACAGGCACAGGCGTAGCCAACAATATTTTAAAGTTGTTAAGTAACGTAGGAAAGCAGTATGGCACCTTATTTGTGTGGAAGGATGTTTTTTAAACTATGCAGTACTTTACTTTATTCCTCCACATTAAGAGATATGCGAAGGATATCAGAATGGATAGAATAAACTGATGACAGCAACATCCATTGTAGATTATAAGAATATGTGCTCATGGCTACAATATTATACTGGAGACTATTGATTCACAGATCACTCAATTTTTACCTCTATACAAACCATATTAATGAATATAACAACCACTCACTTACATTTAATGTGTATCTTTTCAATATCTAAGCCCCTTTGAAAGTTCATTGAATGTTAAAAATCCTCCAACGTAGCGGGT                                                                                                                                                                                                ]
[+] EMBL BX619179             [                                                                                                                                                                                                                                                                                                  ntnCACAGATCACTCAATTTTTACCTCTATACAAACCATATTAATGAATATAACAACCACTCACTTACATTTAATGTGTATTTTTTCAATATCTAAGCCCCTTTGAAAGTTCATTGAATGTTGGAAATCCTTCAACGTAGCGGGTGAAAGCCCTTAGCGCAGGAGTGAACAAACAGCCGAGAACAAAAACAGAAAACAAACAATACACATTTACATATTATACTTTCACAAGCCAAAAAAGTATATCACATCCAACCTTGNACATTTAGCCTATATAGTACATGTATTACACAGCAGTTGTTGATTGGATTCGTTCTGAAAGCGAGATAAAAACTGA]




>consensus_3345#0
GTAACACACGGTGAAAACAGTGCAGCAAAACCGATAATATTCACTTAATTATACAGGCAC
AGGCGTAGCCAACAATATTTTAAAGTTGTTAAGTAACGTAGGAAAGCAGTATGGCACCTT
ATTTGTGTGGAAGGATGTTTTTTAAACTATGCAGTACTTTACTTTATTCCTCCACATTAA
GAGATATGCGAAGGATATCAGAATGGATAGAATAAACTGATGACAGCAACATCCATTGTA
GATTATAAGAATATGTGCTCATGGCTACAATATTATACTGGAGACTATTGATTCACAGAT
CACTCAATTTTTACCTCTATACAAACCATATTAATGAATATAACAACCACTCACTTACAT
TTAATGTGTATCTTTTCAATATCTAAGCCCCTTTGAAAGTTCATTGAATGTTAAAAATCC
TCCAACGTAGCGGGTGAAAGCCCTTAGCGCAGGAGTGAACAAACAGCCGAGAACAAAAAC
AGAAAACAAACAATACACATTTACATATTATACTTTCACAAGCCAAAAAAGTATATCACA
TCCAACCTTGNACATTTAGCCTATATAGTACATGTATTACACAGCAGTTGTTGATTGGAT
TCGTTCTGAAAGCGAGATAAAAACTGA

consensusID : consensus_3345#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [TTTTTTTTGGGCGTCTTAACTCAAAATCTATTCCTTTATTCGCTTTGAATTTTTCTTTTCTTGACTTGCATTTTTCTTCAATTACACATACTGTGGTTGGAAGAGTCTTTATAATGGGGGTAGCTTTAAACGTTTCTTAAACTGTATGTTCTTTGCAGTGAGCTACAGGTAAGTATGTGTATTGTAAGGATGTGGTGAATAATTGCTTCTACGCGCCTGTCTATGCTGGGATTTTTCTCTCTTTTTGGTTCTCCTTCAGTTTTTATCTCGCTTTCAGAACAAATCCAATCAACA]

[+] EMBL AGA280070            [TTTTTTTTGGGCGTCTTAACTCAAAATCTATTCCTTTATTCGCTTTGAATTTTTCTTTTCTTGACTTGCATTTTTCTTCAATTACACATACTGTGGTTGGAAGAGTCTTTATAATGGGGGTAGCTTTAAACGTTTCTTAAACTGTATGTTCTTTGCAGTGAGCTACAGGTAAGTATGTGTATTGTAAGGATGTGGTGAATAATTGCTTCTACGCGCCTGTCTATGCTGGGATTTTTCTCTCTTTTTGGTTCTCCTTCAGTTTTTATCTCGCTTTCAGAACAAATCCAATCAACA]




>consensus_3345#1
TTTTTTTTGGGCGTCTTAACTCAAAATCTATTCCTTTATTCGCTTTGAATTTTTCTTTTC
TTGACTTGCATTTTTCTTCAATTACACATACTGTGGTTGGAAGAGTCTTTATAATGGGGG
TAGCTTTAAACGTTTCTTAAACTGTATGTTCTTTGCAGTGAGCTACAGGTAAGTATGTGT
ATTGTAAGGATGTGGTGAATAATTGCTTCTACGCGCCTGTCTATGCTGGGATTTTTCTCT
CTTTTTGGTTCTCCTTCAGTTTTTATCTCGCTTTCAGAACAAATCCAATCAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3345#0      GTAACACACGGTGAAAACAGTGCAGCAAAACCGATAATATTCACTTAATTATACAGGCAC 60
consensus_3345#1      ------------------------------------------------------------
                                                                                  

consensus_3345#0      AGGCGTAGCCAACAATATTTTAAAGTTGTTAAGTAACGTAGGAAAGCAGTATGGCACCTT 120
consensus_3345#1      ----------------------------------------------------------TT 2
                                                                                **

consensus_3345#0      ATTTGTGTGGAAGGATGTTTTTTAAACTATGCAGTACTTTACTTTATTCCTCCACATTAA 180
consensus_3345#1      TTTTTTG-GGCGTCTTAACTCAAAATCTATTCCTTTATTCGCTTTGAATTTTT-CTTTTC 60
                       *** ** **     *   *   ** **** *  *  **  ****     *   * **  

consensus_3345#0      GAGATATGCGAAGGATATCAGAATGGATAGAATAAACTGATGACAGCAACATCCATTGTA 240
consensus_3345#1      TTGACTTGCATTTTTCTTCA------ATTACACATACTG-TGGTTGGAAGAGTCTTTATA 113
                        **  ***        ***      **   * * **** **   * ** *  * ** **

consensus_3345#0      GATTATAAGAATATGTGCTCATGGCTACAATATTATACTGGAGACTATTGATTCACAGAT 300
consensus_3345#1      ----ATGGGGGTA-GCTTTAAACGTTTC----TTAAACTGTATGTTCTT--TGCAGTGAG 162
                          **  *  ** *   * *  * * *    *** **** *   * **  * **  ** 

consensus_3345#0      CACTCAATTTTTACCTCTATACAAACCATATTAATGAATA-TAACAACCACTCACTTACA 359
consensus_3345#1      CTACAGGTAAGTATGTGTATTGTAAGGATGT-GGTGAATAATTGCTTCTACGCGCCTGTC 221
                      *      *   **  * ***   **  ** *   ****** *  *  * ** * * *   

consensus_3345#0      TTTAATGTGTATCTTTTCAATATCTAAGCCCCTTTGAAAGTTCATTGAATGTTAAAAATC 419
consensus_3345#1      TATGCTGGGATTTTTCTCTCTTTTTGGTTCTCCTTCAGTTTTTATCTCGCTTTCAGAACA 281
                      * *  ** *  * ** **  * * *    * * ** *   ** **      ** * **  

consensus_3345#0      CTCCAACGTAGCGGGTGAAAGCCCTTAGCGCAGGAGTGAACAAACAGCCGAGAACAAAAA 479
consensus_3345#1      AATCCAATCAACA----------------------------------------------- 294
                         * *   * *                                                

consensus_3345#0      CAGAAAACAAACAATACACATTTACATATTATACTTTCACAAGCCAAAAAAGTATATCAC 539
consensus_3345#1      ------------------------------------------------------------
                                                                                  

consensus_3345#0      ATCCAACCTTGNACATTTAGCCTATATAGTACATGTATTACACAGCAGTTGTTGATTGGA 599
consensus_3345#1      ------------------------------------------------------------
                                                                                  

consensus_3345#0      TTCGTTCTGAAAGCGAGATAAAAACTGA 627
consensus_3345#1      ----------------------------