cluster # 3353

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Anopheles gambiae
cluster # 3353 cluster # 3353 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3353#0 length = 383 sequences # 2

consensus_3353#1 length = 330 sequences # 1

consensusID : consensus_3353#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 383
fasta sequence

                              [CCGGTCAAGATTTGTACGCGAAAAATTCCTATTTTAAACAGCATCTACATGATGGCGATTCGGCTGATTTGATTGAATGCAAACAAATGGATGTATTCTTGTTAGGAGCGCAGGAAGTGAATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAA-TTTTTTTCGGCTGTATTATAACGATAAATTTGATTGCAATAATGAATATGGAATCATTTCTACATCATGCAATGCTTAGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGCTTAGTTTTATCTCAACGTTTTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCTGAATTAATACAAATAAAGAACATTCTTTTAGTCGTAAAAAAAA]

[+] EMBL BM622415             [CCGGTCAAGATTTGTACGCGAAAAATTCCTATTTTAAACAGCATCTACATGATGGCGATTCGGCTGATTTGATTGAATGCAAACAAATGGATGTATTCTTGTTAGGAGCGCAGGAAGTGAATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAA TTTTTTTCGGCTGTATTATAACGATAAATTTGATTGCAATAATGAATATGGAATCATTTCTACATCATGCAATGCTTAGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGCTTAGTTTTATCTCAACGTTTTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCTGAATTAATACAAATAAAGAACATTCTTTTAGTCGT        ]
[-] EMBL AGA280144            [                                                                         TGAATGCAAACAAATGGATGTATTCTTGTTAGGAGCGCAGGGAGTGAATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAATTTTTTTTCGGCTGTATTATAACGATAAATTTGATTGCAATAATGAATATGGAATCATTTCTACATCATGCAATGCTTAGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGCTTAGTTTTATCTCAACGTTTTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCTGAATTAATACAAATAAAGAACATTCTTTTAGTTGTAAAAAAAA]




>consensus_3353#0
CCGGTCAAGATTTGTACGCGAAAAATTCCTATTTTAAACAGCATCTACATGATGGCGATT
CGGCTGATTTGATTGAATGCAAACAAATGGATGTATTCTTGTTAGGAGCGCAGGAAGTGA
ATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAATTTTTTTCGGCTGTATT
ATAACGATAAATTTGATTGCAATAATGAATATGGAATCATTTCTACATCATGCAATGCTT
AGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGCTTAGTTTTATCTCAACGTT
TTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCTGAATTAATACAAATAAAGAA
CATTCTTTTAGTCGTAAAAAAAA

consensusID : consensus_3353#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [CCGCCCACGCGTCCGTTCGGCTGATTTGATTGAATGCAAACAAATGGATGTATTCTTGTTAGGAGCGCAGGGAGTGAATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAATTTTTTTTTCGGCTGTATTATAACGATAAATTTGATTGCAATAATGAATATGGAATCATTTCTACATCATGCAATGCTTAGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGCTTAGTTTTATCTCAACGTCATTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCTGAATTAATACAAATAAAGAACATTCTTTTA]

[+] EMBL BM586487             [CCGCCCACGCGTCCGTTCGGCTGATTTGATTGAATGCAAACAAATGGATGTATTCTTGTTAGGAGCGCAGGGAGTGAATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAATTTTTTTTTCGGCTGTATTATAACGATAAATTTGATTGCAATAATGAATATGGAATCATTTCTACATCATGCAATGCTTAGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGCTTAGTTTTATCTCAACGTCATTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCTGAATTAATACAAATAAAGAACATTCTTTTA]




>consensus_3353#1
CCGCCCACGCGTCCGTTCGGCTGATTTGATTGAATGCAAACAAATGGATGTATTCTTGTT
AGGAGCGCAGGGAGTGAATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAA
TTTTTTTTTCGGCTGTATTATAACGATAAATTTGATTGCAATAATGAATATGGAATCATT
TCTACATCATGCAATGCTTAGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGC
TTAGTTTTATCTCAACGTCATTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCT
GAATTAATACAAATAAAGAACATTCTTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3353#0      CCGGTCAAGATTTGTACGCGAAAAATTCCTATTTTAAACAGCATCTACATGATGGCGATT 60
consensus_3353#1      ----------------------------------------CCGCCCACGC---GTCCGTT 17
                                                               *  * **     * *  **

consensus_3353#0      CGGCTGATTTGATTGAATGCAAACAAATGGATGTATTCTTGTTAGGAGCGCAGGAAGTGA 120
consensus_3353#1      CGGCTGATTTGATTGAATGCAAACAAATGGATGTATTCTTGTTAGGAGCGCAGGGAGTGA 77
                      ****************************************************** *****

consensus_3353#0      ATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAATTTTTTT--CGGCTGTA 178
consensus_3353#1      ATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAATTTTTTTTTCGGCTGTA 137
                      **************************************************  ********

consensus_3353#0      TTATAACGATAAATTTGATTGCAATAATGAATATGGAATCATTTCTACATCATGCAATGC 238
consensus_3353#1      TTATAACGATAAATTTGATTGCAATAATGAATATGGAATCATTTCTACATCATGCAATGC 197
                      ************************************************************

consensus_3353#0      TTAGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGCTTAGTTTTATCTCAACG 298
consensus_3353#1      TTAGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGCTTAGTTTTATCTCAACG 257
                      ************************************************************

consensus_3353#0      TT-TTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCTGAATTAATACAAATAAA 357
consensus_3353#1      TCATTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCTGAATTAATACAAATAAA 317
                      *  *********************************************************

consensus_3353#0      GAACATTCTTTTAGTCGTAAAAAAAA 383
consensus_3353#1      GAACATTCTTTTA------------- 330
                      *************