cluster # 3356

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3356 cluster # 3356 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3356#0 length = 674 sequences # 1

consensus_3356#1 length = 613 sequences # 1
consensus_3356#2 length = 265 sequences # 1

consensusID : consensus_3356#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence

                              [GCTCAGCAGAATCCCGNGGTTAGTATGTGTATCTGGACTTCTGTTGCTGCTATTTGTACGACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCAAACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGATTTCGTAACGAACTCTTACGTTCGGTGACGCCGGATCTGATCGAAAATGGGGCCCTTGGAATCATGTGCCCTGATCTATAAAAATTGGGGACTCCCAGGGTTAACNTTATAAGGTACCCGTGGCACAGGGCCNAAGGAATCTGTTACGGCCGAANGGCATTTGCACATACATGGTATCCCCGCGGGATTCGCGTTACAACACCTGGAAGCCGGCTGATTCGGNAGCAAGGACCAAGTCTCATATGGTGACGTCGACCATACAATNCCTGGAGAACGATAACCAGNAACCACCACACATGGGTCGCATNATACCCCAGGCAGACCCGGTACNATTAANTTGGCCACTGGGGGATAATAAATGGGTAGAACATACAGCTATAGAAATCAACCANCAAACGCTGAAAGGAGACGACAACANACCACAAATATAANAGAGAAATGCAGAAGAGCCAANAATCAACGCGAAATGTAANGGGNAATTATNGAACNACANCGACNCAT]

[+] EMBL AL696111             [GCTCAGCAGAATCCCGNGGTTAGTATGTGTATCTGGACTTCTGTTGCTGCTATTTGTACGACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCAAACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGATTTCGTAACGAACTCTTACGTTCGGTGACGCCGGATCTGATCGAAAATGGGGCCCTTGGAATCATGTGCCCTGATCTATAAAAATTGGGGACTCCCAGGGTTAACNTTATAAGGTACCCGTGGCACAGGGCCNAAGGAATCTGTTACGGCCGAANGGCATTTGCACATACATGGTATCCCCGCGGGATTCGCGTTACAACACCTGGAAGCCGGCTGATTCGGNAGCAAGGACCAAGTCTCATATGGTGACGTCGACCATACAATNCCTGGAGAACGATAACCAGNAACCACCACACATGGGTCGCATNATACCCCAGGCAGACCCGGTACNATTAANTTGGCCACTGGGGGATAATAAATGGGTAGAACATACAGCTATAGAAATCAACCANCAAACGCTGAAAGGAGACGACAACANACCACAAATATAANAGAGAAATGCAGAAGAGCCAANAATCAACGCGAAATGTAANGGGNAATTATNGAACNACANCGACNCAT]




>consensus_3356#0
GCTCAGCAGAATCCCGNGGTTAGTATGTGTATCTGGACTTCTGTTGCTGCTATTTGTACG
ACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCAA
ACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGATTTCGTA
ACGAACTCTTACGTTCGGTGACGCCGGATCTGATCGAAAATGGGGCCCTTGGAATCATGT
GCCCTGATCTATAAAAATTGGGGACTCCCAGGGTTAACNTTATAAGGTACCCGTGGCACA
GGGCCNAAGGAATCTGTTACGGCCGAANGGCATTTGCACATACATGGTATCCCCGCGGGA
TTCGCGTTACAACACCTGGAAGCCGGCTGATTCGGNAGCAAGGACCAAGTCTCATATGGT
GACGTCGACCATACAATNCCTGGAGAACGATAACCAGNAACCACCACACATGGGTCGCAT
NATACCCCAGGCAGACCCGGTACNATTAANTTGGCCACTGGGGGATAATAAATGGGTAGA
ACATACAGCTATAGAAATCAACCANCAAACGCTGAAAGGAGACGACAACANACCACAAAT
ATAANAGAGAAATGCAGAAGAGCCAANAATCAACGCGAAATGTAANGGGNAATTATNGAA
CNACANCGACNCAT

consensusID : consensus_3356#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [CCGCGGACGCGTGGGTTGTTATTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATAAAACGAAAAATTAACTGTGAATCGACTTAGTCTGGAGCCGCGCGGATTAAAAGCTTATTCTGTACAGTCTCGGAAGGTTAATTGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCTGCCTGCTCAATCATTGTTCTAGTTACAACTGCACTAGAACCAACATCGACGAGTAAACGTAATACATCCATTGCGACAAGCCAAGGCGGAACAGCGAAAGACATGCAAATGTTTGGCATCGATAGTAGAAAAGCCACAACCTTCCCGGCGTATGTGGTATCTGGACTTCTGTTGCTGCTATTTGTACGACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCAAACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGACTTTTGTAACGAACTCTTACGTTCGGCTGACGCCGGATCTGCAATCGAAGAATGGCGCCATTTGGAATCATGTGCCCTGCACATCTATAAATTGGGAGCTCCAGGTTAACTTTAAGGTACACGGCAAGGGCAAGGA]

[+] EMBL BM588158             [CCGCGGACGCGTGGGTTGTTATTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATAAAACGAAAAATTAACTGTGAATCGACTTAGTCTGGAGCCGCGCGGATTAAAAGCTTATTCTGTACAGTCTCGGAAGGTTAATTGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCTGCCTGCTCAATCATTGTTCTAGTTACAACTGCACTAGAACCAACATCGACGAGTAAACGTAATACATCCATTGCGACAAGCCAAGGCGGAACAGCGAAAGACATGCAAATGTTTGGCATCGATAGTAGAAAAGCCACAACCTTCCCGGCGTATGTGGTATCTGGACTTCTGTTGCTGCTATTTGTACGACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCAAACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGACTTTTGTAACGAACTCTTACGTTCGGCTGACGCCGGATCTGCAATCGAAGAATGGCGCCATTTGGAATCATGTGCCCTGCACATCTATAAATTGGGAGCTCCAGGTTAACTTTAAGGTACACGGCAAGGGCAAGGA]




>consensus_3356#1
CCGCGGACGCGTGGGTTGTTATTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATA
AAACGAAAAATTAACTGTGAATCGACTTAGTCTGGAGCCGCGCGGATTAAAAGCTTATTC
TGTACAGTCTCGGAAGGTTAATTGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCTGCCT
GCTCAATCATTGTTCTAGTTACAACTGCACTAGAACCAACATCGACGAGTAAACGTAATA
CATCCATTGCGACAAGCCAAGGCGGAACAGCGAAAGACATGCAAATGTTTGGCATCGATA
GTAGAAAAGCCACAACCTTCCCGGCGTATGTGGTATCTGGACTTCTGTTGCTGCTATTTG
TACGACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTT
TCAAACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGACTT
TTGTAACGAACTCTTACGTTCGGCTGACGCCGGATCTGCAATCGAAGAATGGCGCCATTT
GGAATCATGTGCCCTGCACATCTATAAATTGGGAGCTCCAGGTTAACTTTAAGGTACACG
GCAAGGGCAAGGA

consensusID : consensus_3356#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 265
fasta sequence

                              [TTTTTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATAAAACGAAAAATTAACTGTGAATCGACTTAGTCTGGAGCCGCGCGGGTTAAAAGCTTATTCTGTACAGTCTCGGGTACGATCCGGCTGCTACTCGCAACTCCTCTGCTCGATACAAACCACAAGCCACGACAGAACGGCTTGCAGTGAAGAATCCTATTTTCACACATTTTTGGTTTCTAGAAGGTTAATCGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCT]

[+] EMBL AGA280193            [TTTTTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATAAAACGAAAAATTAACTGTGAATCGACTTAGTCTGGAGCCGCGCGGGTTAAAAGCTTATTCTGTACAGTCTCGGGTACGATCCGGCTGCTACTCGCAACTCCTCTGCTCGATACAAACCACAAGCCACGACAGAACGGCTTGCAGTGAAGAATCCTATTTTCACACATTTTTGGTTTCTAGAAGGTTAATCGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCT]




>consensus_3356#2
TTTTTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATAAAACGAAAAATTAACTGT
GAATCGACTTAGTCTGGAGCCGCGCGGGTTAAAAGCTTATTCTGTACAGTCTCGGGTACG
ATCCGGCTGCTACTCGCAACTCCTCTGCTCGATACAAACCACAAGCCACGACAGAACGGC
TTGCAGTGAAGAATCCTATTTTCACACATTTTTGGTTTCTAGAAGGTTAATCGCTTCGCA
AATACTGCCGCCTGCCTGCCTGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3356#0      GCTCAGCAGAATCCCGNGGTTAGTATGTGTATCTGGACTTCTGTTGCTGCTATTTGTACG 60
consensus_3356#1      ------------------------------CCGCGGACGCGTGG-GTTGTTATTTA-GCG 28
consensus_3356#2      --------------------------------------------------TTTTTTAGCG 10
                                                                        * ***   **

consensus_3356#0      ACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCA- 119
consensus_3356#1      AC----TTCGCCTTATCATCGTTTCATTAACTA-ATAAAACGAAAA-ATTAACTGTGAAT 82
consensus_3356#2      AC----TTCGCCTTATCATCGTTTCATTAACTA-ATAAAACGAAAA-ATTAACTGTGAAT 64
                      **    *****   *      ** ** * **** ** ****** *  ***  ** *  * 

consensus_3356#0      -AACCCTACCAAGGATCGGGCATGACAATACCGTACTGGG----ATTTCATAGGTACGAT 174
consensus_3356#1      CGACTTAGTCTGGAGCCGCGCGGATTAAAAGCTTATTCTGTACAGTCTCGGAAGGTTAAT 142
consensus_3356#2      CGACTTAGTCTGGAGCCGCGCGGGTTAAAAGCTTATTCTGTACAGTCTCG--GGTACGAT 122
                        **     *  *   ** **     ** * * ** *  *     * **    *    **

consensus_3356#0      TTCGTAACGAACTCTTACGTTCGG-TGACGCCGGATCTGATCGAAAATGGGGCCCTTGGA 233
consensus_3356#1      TGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCTGCCTGCTCAATCATTG-----TTCTA 197
consensus_3356#2      CCGG---------CTGCTACTCGC--AACTCC---TCTGCTCGATACAAA----CCACAA 164
                                   **       *     *  *    *** ** *               *

consensus_3356#0      ATCATGTGCCCTGATCTATAAAAATTGGGGACTCCCAGGGTTAACNTTATAAGGTACCCG 293
consensus_3356#1      GTTACAA---CTGCACTAGAACCAACATCGAC-----GAGTAAACGTAATA---CATCCA 246
consensus_3356#2      GCCACGA---CAGAACGGCTTGCAGTGAAGAATC------CTATTTTCACACATTTTTGG 215
                         *      * *  *       *     **           *   * * *         

consensus_3356#0      TGGCACAGGGCCNAAGGAATCTGTTACGGCCGAANGGCATTTGCACATACATGGTATCCC 353
consensus_3356#1      TTGCGACAAGCCAAGG-----CGGAACAGC-GAAAGACA--TGCAAATGTTTGGCATCG- 297
consensus_3356#2      TTTCTAGAAGGTTAATCGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCT---------- 265
                      *  *     *   *        *  *   * *         ***                

consensus_3356#0      CGCGGGATTCGCGTTACAACACCTGGAAGCCGGCTGATTCGGNAGCAAGGACCAAGTCTC 413
consensus_3356#1      -ATAGTAGAAAAGCCACAACCTTC-----CCGGCGTATGTGGTATCT-GGACT---TCTG 347
consensus_3356#2      ------------------------------------------------------------
                                                                                  

consensus_3356#0      ATATGGTGACGTCGACCATACAATNCCTGG-AGAACGATAACCAGNAACCACCACACATG 472
consensus_3356#1      TTGCTGCTATTTGTACGACACAGTTCGCAACAAAGCGATTAC-AATGACTACATGAAACG 406
consensus_3356#2      ------------------------------------------------------------
                                                                                  

consensus_3356#0      GGTCGCATNATACCCCAGGCAGACCCGGTACNATTAANTTGGCCACTGGGGGATAATAAA 532
consensus_3356#1      AG----AGCATTCCCTTTTCAAACCC--TACCAA-GGATCGGGCATGACAATACCGTACT 459
consensus_3356#2      ------------------------------------------------------------
                                                                                  

consensus_3356#0      TGGGTAGAACA--TACAGCTATAGAAATCAACCANCAAAC---GCTGAAAGGAGA-CGAC 586
consensus_3356#1      GGGATTTCATAGGTACGACTTTTGTAACGAACTCTTACGTTCGGCTGACGCCGGATCTGC 519
consensus_3356#2      ------------------------------------------------------------
                                                                                  

consensus_3356#0      AACANACCACAAATATAANAGAGAA--ATGCAGAAGAGCCAANAATCAACGCGAAATGTA 644
consensus_3356#1      AATCGAAGAATGGCGCCATTTGGAATCATGTGCCCTGCACATCTATAAATTGGGAGCTCC 579
consensus_3356#2      ------------------------------------------------------------
                                                                                  

consensus_3356#0      ANGGGNAATTATNGAACNACANCGACN-CAT--- 674
consensus_3356#1      AGGTTAACTTTAAGGTACACGGCAAGGGCAAGGA 613
consensus_3356#2      ----------------------------------