These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [GCTCAGCAGAATCCCGNGGTTAGTATGTGTATCTGGACTTCTGTTGCTGCTATTTGTACGACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCAAACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGATTTCGTAACGAACTCTTACGTTCGGTGACGCCGGATCTGATCGAAAATGGGGCCCTTGGAATCATGTGCCCTGATCTATAAAAATTGGGGACTCCCAGGGTTAACNTTATAAGGTACCCGTGGCACAGGGCCNAAGGAATCTGTTACGGCCGAANGGCATTTGCACATACATGGTATCCCCGCGGGATTCGCGTTACAACACCTGGAAGCCGGCTGATTCGGNAGCAAGGACCAAGTCTCATATGGTGACGTCGACCATACAATNCCTGGAGAACGATAACCAGNAACCACCACACATGGGTCGCATNATACCCCAGGCAGACCCGGTACNATTAANTTGGCCACTGGGGGATAATAAATGGGTAGAACATACAGCTATAGAAATCAACCANCAAACGCTGAAAGGAGACGACAACANACCACAAATATAANAGAGAAATGCAGAAGAGCCAANAATCAACGCGAAATGTAANGGGNAATTATNGAACNACANCGACNCAT] [+] EMBL AL696111 [GCTCAGCAGAATCCCGNGGTTAGTATGTGTATCTGGACTTCTGTTGCTGCTATTTGTACGACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCAAACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGATTTCGTAACGAACTCTTACGTTCGGTGACGCCGGATCTGATCGAAAATGGGGCCCTTGGAATCATGTGCCCTGATCTATAAAAATTGGGGACTCCCAGGGTTAACNTTATAAGGTACCCGTGGCACAGGGCCNAAGGAATCTGTTACGGCCGAANGGCATTTGCACATACATGGTATCCCCGCGGGATTCGCGTTACAACACCTGGAAGCCGGCTGATTCGGNAGCAAGGACCAAGTCTCATATGGTGACGTCGACCATACAATNCCTGGAGAACGATAACCAGNAACCACCACACATGGGTCGCATNATACCCCAGGCAGACCCGGTACNATTAANTTGGCCACTGGGGGATAATAAATGGGTAGAACATACAGCTATAGAAATCAACCANCAAACGCTGAAAGGAGACGACAACANACCACAAATATAANAGAGAAATGCAGAAGAGCCAANAATCAACGCGAAATGTAANGGGNAATTATNGAACNACANCGACNCAT] consensusID : consensus_3356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [CCGCGGACGCGTGGGTTGTTATTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATAAAACGAAAAATTAACTGTGAATCGACTTAGTCTGGAGCCGCGCGGATTAAAAGCTTATTCTGTACAGTCTCGGAAGGTTAATTGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCTGCCTGCTCAATCATTGTTCTAGTTACAACTGCACTAGAACCAACATCGACGAGTAAACGTAATACATCCATTGCGACAAGCCAAGGCGGAACAGCGAAAGACATGCAAATGTTTGGCATCGATAGTAGAAAAGCCACAACCTTCCCGGCGTATGTGGTATCTGGACTTCTGTTGCTGCTATTTGTACGACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCAAACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGACTTTTGTAACGAACTCTTACGTTCGGCTGACGCCGGATCTGCAATCGAAGAATGGCGCCATTTGGAATCATGTGCCCTGCACATCTATAAATTGGGAGCTCCAGGTTAACTTTAAGGTACACGGCAAGGGCAAGGA] [+] EMBL BM588158 [CCGCGGACGCGTGGGTTGTTATTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATAAAACGAAAAATTAACTGTGAATCGACTTAGTCTGGAGCCGCGCGGATTAAAAGCTTATTCTGTACAGTCTCGGAAGGTTAATTGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCTGCCTGCTCAATCATTGTTCTAGTTACAACTGCACTAGAACCAACATCGACGAGTAAACGTAATACATCCATTGCGACAAGCCAAGGCGGAACAGCGAAAGACATGCAAATGTTTGGCATCGATAGTAGAAAAGCCACAACCTTCCCGGCGTATGTGGTATCTGGACTTCTGTTGCTGCTATTTGTACGACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCAAACCCTACCAAGGATCGGGCATGACAATACCGTACTGGGATTTCATAGGTACGACTTTTGTAACGAACTCTTACGTTCGGCTGACGCCGGATCTGCAATCGAAGAATGGCGCCATTTGGAATCATGTGCCCTGCACATCTATAAATTGGGAGCTCCAGGTTAACTTTAAGGTACACGGCAAGGGCAAGGA] consensusID : consensus_3356#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence [TTTTTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATAAAACGAAAAATTAACTGTGAATCGACTTAGTCTGGAGCCGCGCGGGTTAAAAGCTTATTCTGTACAGTCTCGGGTACGATCCGGCTGCTACTCGCAACTCCTCTGCTCGATACAAACCACAAGCCACGACAGAACGGCTTGCAGTGAAGAATCCTATTTTCACACATTTTTGGTTTCTAGAAGGTTAATCGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCT] [+] EMBL AGA280193 [TTTTTTAGCGACTTCGCCTTATCATCGTTTCATTAACTAATAAAACGAAAAATTAACTGTGAATCGACTTAGTCTGGAGCCGCGCGGGTTAAAAGCTTATTCTGTACAGTCTCGGGTACGATCCGGCTGCTACTCGCAACTCCTCTGCTCGATACAAACCACAAGCCACGACAGAACGGCTTGCAGTGAAGAATCCTATTTTCACACATTTTTGGTTTCTAGAAGGTTAATCGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3356#0 GCTCAGCAGAATCCCGNGGTTAGTATGTGTATCTGGACTTCTGTTGCTGCTATTTGTACG 60 consensus_3356#1 ------------------------------CCGCGGACGCGTGG-GTTGTTATTTA-GCG 28 consensus_3356#2 --------------------------------------------------TTTTTTAGCG 10 * *** ** consensus_3356#0 ACACAGTTCGCAACAAAGCGATTACAATGACTACATGAAACGAGAGCATTCCCTTTTCA- 119 consensus_3356#1 AC----TTCGCCTTATCATCGTTTCATTAACTA-ATAAAACGAAAA-ATTAACTGTGAAT 82 consensus_3356#2 AC----TTCGCCTTATCATCGTTTCATTAACTA-ATAAAACGAAAA-ATTAACTGTGAAT 64 ** ***** * ** ** * **** ** ****** * *** ** * * consensus_3356#0 -AACCCTACCAAGGATCGGGCATGACAATACCGTACTGGG----ATTTCATAGGTACGAT 174 consensus_3356#1 CGACTTAGTCTGGAGCCGCGCGGATTAAAAGCTTATTCTGTACAGTCTCGGAAGGTTAAT 142 consensus_3356#2 CGACTTAGTCTGGAGCCGCGCGGGTTAAAAGCTTATTCTGTACAGTCTCG--GGTACGAT 122 ** * * ** ** ** * * ** * * * ** * ** consensus_3356#0 TTCGTAACGAACTCTTACGTTCGG-TGACGCCGGATCTGATCGAAAATGGGGCCCTTGGA 233 consensus_3356#1 TGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCTGCCTGCTCAATCATTG-----TTCTA 197 consensus_3356#2 CCGG---------CTGCTACTCGC--AACTCC---TCTGCTCGATACAAA----CCACAA 164 ** * * * *** ** * * consensus_3356#0 ATCATGTGCCCTGATCTATAAAAATTGGGGACTCCCAGGGTTAACNTTATAAGGTACCCG 293 consensus_3356#1 GTTACAA---CTGCACTAGAACCAACATCGAC-----GAGTAAACGTAATA---CATCCA 246 consensus_3356#2 GCCACGA---CAGAACGGCTTGCAGTGAAGAATC------CTATTTTCACACATTTTTGG 215 * * * * * ** * * * * consensus_3356#0 TGGCACAGGGCCNAAGGAATCTGTTACGGCCGAANGGCATTTGCACATACATGGTATCCC 353 consensus_3356#1 TTGCGACAAGCCAAGG-----CGGAACAGC-GAAAGACA--TGCAAATGTTTGGCATCG- 297 consensus_3356#2 TTTCTAGAAGGTTAATCGCTTCGCAAATACTGCCGCCTGCCTGCCTGCCT---------- 265 * * * * * * * * *** consensus_3356#0 CGCGGGATTCGCGTTACAACACCTGGAAGCCGGCTGATTCGGNAGCAAGGACCAAGTCTC 413 consensus_3356#1 -ATAGTAGAAAAGCCACAACCTTC-----CCGGCGTATGTGGTATCT-GGACT---TCTG 347 consensus_3356#2 ------------------------------------------------------------ consensus_3356#0 ATATGGTGACGTCGACCATACAATNCCTGG-AGAACGATAACCAGNAACCACCACACATG 472 consensus_3356#1 TTGCTGCTATTTGTACGACACAGTTCGCAACAAAGCGATTAC-AATGACTACATGAAACG 406 consensus_3356#2 ------------------------------------------------------------ consensus_3356#0 GGTCGCATNATACCCCAGGCAGACCCGGTACNATTAANTTGGCCACTGGGGGATAATAAA 532 consensus_3356#1 AG----AGCATTCCCTTTTCAAACCC--TACCAA-GGATCGGGCATGACAATACCGTACT 459 consensus_3356#2 ------------------------------------------------------------ consensus_3356#0 TGGGTAGAACA--TACAGCTATAGAAATCAACCANCAAAC---GCTGAAAGGAGA-CGAC 586 consensus_3356#1 GGGATTTCATAGGTACGACTTTTGTAACGAACTCTTACGTTCGGCTGACGCCGGATCTGC 519 consensus_3356#2 ------------------------------------------------------------ consensus_3356#0 AACANACCACAAATATAANAGAGAA--ATGCAGAAGAGCCAANAATCAACGCGAAATGTA 644 consensus_3356#1 AATCGAAGAATGGCGCCATTTGGAATCATGTGCCCTGCACATCTATAAATTGGGAGCTCC 579 consensus_3356#2 ------------------------------------------------------------ consensus_3356#0 ANGGGNAATTATNGAACNACANCGACN-CAT--- 674 consensus_3356#1 AGGTTAACTTTAAGGTACACGGCAAGGGCAAGGA 613 consensus_3356#2 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||