cluster # 3360

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Anopheles gambiae
cluster # 3360 cluster # 3360 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3360#0 length = 792 sequences # 2

consensus_3360#1 length = 679 sequences # 1

consensusID : consensus_3360#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 792
fasta sequence

                              [CGGGCTCGGGTCCGACATCGGTGGTTCGATACGCATGCCCGCCTTCTTCAACGGCATCTTTGGCCATAAGCCGACCAAGTTTGTCGTGTCGAACGAGGGCCAGTACCCGGTGGCGCTGTCGGAGGAGCAAAACTCATTCCTAGGCATCGGTCCAATGTGTCGCTACGCAACCGATTTGAAGCCGATGCTGCGCATCATTGCGGACGAGAACGCACCGAAGCTGCGCCTGGACGAGCCGGTCGATCTGAAGCAGGTGAAGTTCTTCTACCAAATCAACGACGGTGGCGCCCACCTGGTCTCGCCCGTCGATCTGGACATACGGGACGCGATGGAGAAGGTGATGGCACACTTCCGCGCGACGGTCAAGGCGGAGGTGAAGAAGGTGTACCTGGACAAGCTGCGCAAGTCGGCCCCGATGTGGCTGGCGAACATGAAAACCCCGTCCAAGGTGGGCTTCGACTCGCAGCTCGCCAATCTCGAGGGCGCCATCAATCCCTGGCTCGAGCTGGCCAAGTGGCCGCTGCGCATGTCGAACCACACGCTGATCGGCATACTGACCGCGCTGACCGAGCGGGGAGGGGTCAAGTACGGCTCGGCCGAGTACCACCACTACGTGCAGCAGAAGCAGGAGCTGGTGAGCGAGTTCCGCGACATGCTCGGCGAGAATGGGGTGTTTATCTATCCGACCCACCCGACGGTAGCGCCGTACCACAACGAGCCGCTGATCCGGGCGCTTAACTTTAGCTACACCGCCATCATTAACGTGCTGGGGCTGCCGGNCACGGCCGTACC]

[+] EMBL AGA280227            [CGGGCTCGGGTCCGACATCGGTGGTTCGATACGCATGCCCGCCTTCTTCAACGGCATCTTTGGCCATAAGCCGACCAAGTTTGTCGTGTCGAACGAGGGCCAGTACCCGGTGGCGCTGTCGGAGGAGCAAAACTCATTCCTAGGCATCGGTCCAATGTGTCGCTACGCAACCGATTTGAAGCCGATGCTGCGCATCATTGCGGACGAGAACGCACCGAAGCTGCGCCTGGACGAGCCGGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX624754             [                                                                                                                                                                                            TGCGCATCATTGCGGACGAGAACGCACCGAAGCTGCGCCTGGACGAGCCGGTCGATCTGAAGCAGGTGAAGTTCTTCTACCAAATCAACGACGGTGGCGCCCACCTGGTCTCGCCCGTCGATCTGGACATACGGGACGCGATGGAGAAGGTGATGGCACACTTCCGCGCGACGGTCAAGGCGGAGGTGAAGAAGGTGTACCTGGACAAGCTGCGCAAGTCGGCCCCGATGTGGCTGGCGAACATGAAAACCCCGTCCAAGGTGGGCTTCGACTCGCAGCTCGCCAATCTCGAGGGCGCCATCAATCCCTGGCTCGAGCTGGCCAAGTGGCCGCTGCGCATGTCGAACCACACGCTGATCGGCATACTGACCGCGCTGACCGAGCGGGGAGGGGTCAAGTACGGCTCGGCCGAGTACCACCACTACGTGCAGCAGAAGCAGGAGCTGGTGAGCGAGTTCCGCGACATGCTCGGCGAGAATGGGGTGTTTATCTATCCGACCCACCCGACGGTAGCGCCGTACCACAACGAGCCGCTGATCCGGGCGCTTAACTTTAGCTACACCGCCATCATTAACGTGCTGGGGCTGCCGGNCACGGCCGTACC]




>consensus_3360#0
CGGGCTCGGGTCCGACATCGGTGGTTCGATACGCATGCCCGCCTTCTTCAACGGCATCTT
TGGCCATAAGCCGACCAAGTTTGTCGTGTCGAACGAGGGCCAGTACCCGGTGGCGCTGTC
GGAGGAGCAAAACTCATTCCTAGGCATCGGTCCAATGTGTCGCTACGCAACCGATTTGAA
GCCGATGCTGCGCATCATTGCGGACGAGAACGCACCGAAGCTGCGCCTGGACGAGCCGGT
CGATCTGAAGCAGGTGAAGTTCTTCTACCAAATCAACGACGGTGGCGCCCACCTGGTCTC
GCCCGTCGATCTGGACATACGGGACGCGATGGAGAAGGTGATGGCACACTTCCGCGCGAC
GGTCAAGGCGGAGGTGAAGAAGGTGTACCTGGACAAGCTGCGCAAGTCGGCCCCGATGTG
GCTGGCGAACATGAAAACCCCGTCCAAGGTGGGCTTCGACTCGCAGCTCGCCAATCTCGA
GGGCGCCATCAATCCCTGGCTCGAGCTGGCCAAGTGGCCGCTGCGCATGTCGAACCACAC
GCTGATCGGCATACTGACCGCGCTGACCGAGCGGGGAGGGGTCAAGTACGGCTCGGCCGA
GTACCACCACTACGTGCAGCAGAAGCAGGAGCTGGTGAGCGAGTTCCGCGACATGCTCGG
CGAGAATGGGGTGTTTATCTATCCGACCCACCCGACGGTAGCGCCGTACCACAACGAGCC
GCTGATCCGGGCGCTTAACTTTAGCTACACCGCCATCATTAACGTGCTGGGGCTGCCGGN
CACGGCCGTACC

consensusID : consensus_3360#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 679
fasta sequence

                              [CCGCCCACGCGTCCGCGAAGCTGCGCCTGGACGAGCCGGTCGATCTGAAGCAGGTGAAGTTCTTCTACCAAATCAACGACGGTGGCGCCCACCTGGTCTCGCCCGTCGATCTGGACATACGGGACGCGATGGAGAAGGTGATGGCACACTTCCGCGCGACGGTCAAGGCGGAGGTGAAGAAGGTGTACCTGGACAAGCTGCGCAAGTCGGCCCCGATGTGGCTGGCGAACATGAAAACCCCGTCCAAGGTGGGCTTCGACTCGCAGCTCGCCAATCTCGAGGGCGCCATCAATCCCTGGCTCGAGCTGGCCAAGTGGCCGCTGCGCATGTCGAACCACACGCTGATCGGCATACTGACCGCGCTGACCGAGCGGGGAGGGGTCAAGTACGGCTCGGCCGAGTACCACCACTACGTGCAGCAGAAGCAGGAGCTGGTGAGCGAGTTCCGCGACATGCTCGGCGAGAATGGGGTGTTTATCTATCCGACCCACCCGACGGTAGCGCCGTACCACAACGAGCCGCTGATCCGGGCGCTTAACTTTAGCTACACCGCCATCATTAACGTGCTGGGGCTGCCGGCCACGGCCGTACCGCTCGGGCTGGGCCGCGAGGGGCTGCCGGTGGGGCTGCAAGTGGTGGCGGGCGTCAACCAGGACCGGCTGTGTTTTGGCGGTCGCCT]

[+] EMBL BM656635             [CCGCCCACGCGTCCGCGAAGCTGCGCCTGGACGAGCCGGTCGATCTGAAGCAGGTGAAGTTCTTCTACCAAATCAACGACGGTGGCGCCCACCTGGTCTCGCCCGTCGATCTGGACATACGGGACGCGATGGAGAAGGTGATGGCACACTTCCGCGCGACGGTCAAGGCGGAGGTGAAGAAGGTGTACCTGGACAAGCTGCGCAAGTCGGCCCCGATGTGGCTGGCGAACATGAAAACCCCGTCCAAGGTGGGCTTCGACTCGCAGCTCGCCAATCTCGAGGGCGCCATCAATCCCTGGCTCGAGCTGGCCAAGTGGCCGCTGCGCATGTCGAACCACACGCTGATCGGCATACTGACCGCGCTGACCGAGCGGGGAGGGGTCAAGTACGGCTCGGCCGAGTACCACCACTACGTGCAGCAGAAGCAGGAGCTGGTGAGCGAGTTCCGCGACATGCTCGGCGAGAATGGGGTGTTTATCTATCCGACCCACCCGACGGTAGCGCCGTACCACAACGAGCCGCTGATCCGGGCGCTTAACTTTAGCTACACCGCCATCATTAACGTGCTGGGGCTGCCGGCCACGGCCGTACCGCTCGGGCTGGGCCGCGAGGGGCTGCCGGTGGGGCTGCAAGTGGTGGCGGGCGTCAACCAGGACCGGCTGTGTTTTGGCGGTCGCCT]




>consensus_3360#1
CCGCCCACGCGTCCGCGAAGCTGCGCCTGGACGAGCCGGTCGATCTGAAGCAGGTGAAGT
TCTTCTACCAAATCAACGACGGTGGCGCCCACCTGGTCTCGCCCGTCGATCTGGACATAC
GGGACGCGATGGAGAAGGTGATGGCACACTTCCGCGCGACGGTCAAGGCGGAGGTGAAGA
AGGTGTACCTGGACAAGCTGCGCAAGTCGGCCCCGATGTGGCTGGCGAACATGAAAACCC
CGTCCAAGGTGGGCTTCGACTCGCAGCTCGCCAATCTCGAGGGCGCCATCAATCCCTGGC
TCGAGCTGGCCAAGTGGCCGCTGCGCATGTCGAACCACACGCTGATCGGCATACTGACCG
CGCTGACCGAGCGGGGAGGGGTCAAGTACGGCTCGGCCGAGTACCACCACTACGTGCAGC
AGAAGCAGGAGCTGGTGAGCGAGTTCCGCGACATGCTCGGCGAGAATGGGGTGTTTATCT
ATCCGACCCACCCGACGGTAGCGCCGTACCACAACGAGCCGCTGATCCGGGCGCTTAACT
TTAGCTACACCGCCATCATTAACGTGCTGGGGCTGCCGGCCACGGCCGTACCGCTCGGGC
TGGGCCGCGAGGGGCTGCCGGTGGGGCTGCAAGTGGTGGCGGGCGTCAACCAGGACCGGC
TGTGTTTTGGCGGTCGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3360#0      CGGGCTCGGGTCCGACATCGGTGGTTCGATACGCATGCCCGCCTTCTTCAACGGCATCTT 60
consensus_3360#1      ------------------------------------------------------------
                                                                                  

consensus_3360#0      TGGCCATAAGCCGACCAAGTTTGTCGTGTCGAACGAGGGCCAGTACCCGGTGGCGCTGTC 120
consensus_3360#1      ------------------------------------------------------------
                                                                                  

consensus_3360#0      GGAGGAGCAAAACTCATTCCTAGGCATCGGTCCAATGTGTCGCTACGCAACCGATTTGAA 180
consensus_3360#1      ------------------------------------------------------------
                                                                                  

consensus_3360#0      GCCGATGCTGCGCATCATTGCGGACGAGAACGCACCGAAGCTGCGCCTGGACGAGCCGGT 240
consensus_3360#1      -----------------CCGCCCACGCGTCCGC---GAAGCTGCGCCTGGACGAGCCGGT 40
                                         **  *** *  ***   ************************

consensus_3360#0      CGATCTGAAGCAGGTGAAGTTCTTCTACCAAATCAACGACGGTGGCGCCCACCTGGTCTC 300
consensus_3360#1      CGATCTGAAGCAGGTGAAGTTCTTCTACCAAATCAACGACGGTGGCGCCCACCTGGTCTC 100
                      ************************************************************

consensus_3360#0      GCCCGTCGATCTGGACATACGGGACGCGATGGAGAAGGTGATGGCACACTTCCGCGCGAC 360
consensus_3360#1      GCCCGTCGATCTGGACATACGGGACGCGATGGAGAAGGTGATGGCACACTTCCGCGCGAC 160
                      ************************************************************

consensus_3360#0      GGTCAAGGCGGAGGTGAAGAAGGTGTACCTGGACAAGCTGCGCAAGTCGGCCCCGATGTG 420
consensus_3360#1      GGTCAAGGCGGAGGTGAAGAAGGTGTACCTGGACAAGCTGCGCAAGTCGGCCCCGATGTG 220
                      ************************************************************

consensus_3360#0      GCTGGCGAACATGAAAACCCCGTCCAAGGTGGGCTTCGACTCGCAGCTCGCCAATCTCGA 480
consensus_3360#1      GCTGGCGAACATGAAAACCCCGTCCAAGGTGGGCTTCGACTCGCAGCTCGCCAATCTCGA 280
                      ************************************************************

consensus_3360#0      GGGCGCCATCAATCCCTGGCTCGAGCTGGCCAAGTGGCCGCTGCGCATGTCGAACCACAC 540
consensus_3360#1      GGGCGCCATCAATCCCTGGCTCGAGCTGGCCAAGTGGCCGCTGCGCATGTCGAACCACAC 340
                      ************************************************************

consensus_3360#0      GCTGATCGGCATACTGACCGCGCTGACCGAGCGGGGAGGGGTCAAGTACGGCTCGGCCGA 600
consensus_3360#1      GCTGATCGGCATACTGACCGCGCTGACCGAGCGGGGAGGGGTCAAGTACGGCTCGGCCGA 400
                      ************************************************************

consensus_3360#0      GTACCACCACTACGTGCAGCAGAAGCAGGAGCTGGTGAGCGAGTTCCGCGACATGCTCGG 660
consensus_3360#1      GTACCACCACTACGTGCAGCAGAAGCAGGAGCTGGTGAGCGAGTTCCGCGACATGCTCGG 460
                      ************************************************************

consensus_3360#0      CGAGAATGGGGTGTTTATCTATCCGACCCACCCGACGGTAGCGCCGTACCACAACGAGCC 720
consensus_3360#1      CGAGAATGGGGTGTTTATCTATCCGACCCACCCGACGGTAGCGCCGTACCACAACGAGCC 520
                      ************************************************************

consensus_3360#0      GCTGATCCGGGCGCTTAACTTTAGCTACACCGCCATCATTAACGTGCTGGGGCTGCCGGN 780
consensus_3360#1      GCTGATCCGGGCGCTTAACTTTAGCTACACCGCCATCATTAACGTGCTGGGGCTGCCGGC 580
                      *********************************************************** 

consensus_3360#0      CACGGCCGTACC------------------------------------------------ 792
consensus_3360#1      CACGGCCGTACCGCTCGGGCTGGGCCGCGAGGGGCTGCCGGTGGGGCTGCAAGTGGTGGC 640
                      ************                                                

consensus_3360#0      ---------------------------------------
consensus_3360#1      GGGCGTCAACCAGGACCGGCTGTGTTTTGGCGGTCGCCT 679