cluster # 3366

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3366 cluster # 3366 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3366#0 length = 504 sequences # 1

consensus_3366#1 length = 418 sequences # 2

consensusID : consensus_3366#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [CTGCTCTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTTGCTGATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCGGAACTGTGTCGGGAGCCATTTTTTCCTGAAGCACACATTCCCTCCACCGGCACATATTTTATCTTTGTACTGATAAAGCAGCGTCATTTTCACTGCTGCACCACCCCACATGATGGGGGAGAGAGGGGCCGTCGTTTTGTGTATCGATATCACTACGTCACGCGCAGCAGTAGTAGCTGCAGCCACAAACAAGCAAAAACGAATAAACTAGATACACTCTAACCACAACGCAATTCCGGTTAGACACAATTCCGATTAGAAAACTGAGCAATCACTGAGTTAGTTTATTTCTTGTTGGTCTTTTGTTGGTCACTGGACAAGAATGGGTTGCGACACGATCTGTCGTCTGTTCGGTANGGTATATACGACGGACTACTCCCCCAA]

[+] EMBL AGA283465            [CTGCTCTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTTGCTGATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCGGAACTGTGTCGGGAGCCATTTTTTCCTGAAGCACACATTCCCTCCACCGGCACATATTTTATCTTTGTACTGATAAAGCAGCGTCATTTTCACTGCTGCACCACCCCACATGATGGGGGAGAGAGGGGCCGTCGTTTTGTGTATCGATATCACTACGTCACGCGCAGCAGTAGTAGCTGCAGCCACAAACAAGCAAAAACGAATAAACTAGATACACTCTAACCACAACGCAATTCCGGTTAGACACAATTCCGATTAGAAAACTGAGCAATCACTGAGTTAGTTTATTTCTTGTTGGTCTTTTGTTGGTCACTGGACAAGAATGGGTTGCGACACGATCTGTCGTCTGTTCGGTANGGTATATACGACGGACTACTCCCCCAA]




>consensus_3366#0
CTGCTCTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTT
GCTGATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCG
GAACTGTGTCGGGAGCCATTTTTTCCTGAAGCACACATTCCCTCCACCGGCACATATTTT
ATCTTTGTACTGATAAAGCAGCGTCATTTTCACTGCTGCACCACCCCACATGATGGGGGA
GAGAGGGGCCGTCGTTTTGTGTATCGATATCACTACGTCACGCGCAGCAGTAGTAGCTGC
AGCCACAAACAAGCAAAAACGAATAAACTAGATACACTCTAACCACAACGCAATTCCGGT
TAGACACAATTCCGATTAGAAAACTGAGCAATCACTGAGTTAGTTTATTTCTTGTTGGTC
TTTTGTTGGTCACTGGACAAGAATGGGTTGCGACACGATCTGTCGTCTGTTCGGTANGGT
ATATACGACGGACTACTCCCCCAA

consensusID : consensus_3366#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 418
fasta sequence

                              [CTGCTCTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTTGCTAATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCGGAACTGTGTCGGGAGCCATTTTTTCCCGCTGAAGCCTTTCCGTTTGTTGACGGGCGACGTATGCTGGTTCGGTAGTATGCAATCACTTTCCTGTGGGACTTCTCCCAGGGTGTCCGTGTCGCGCTGTTTATTGTTCAATTTGCTGTGGGAGGAGGGCAGCGGCTTCAGGACGGTCACCGGCACCAGCCCTTCCTGGCTGTCGGACGCGTTGATCGACAGACGCACCAGGCAGTAGTCGGGCGCGCCCGAACAGTTCATGTCGACGATTTCGACCTGCTGACCTTTGCTGACGCCCAGC]

[+] EMBL AGA280262            [CTGCTCTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTTGCTAATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCGGAACTGTGTCGGGAGCCATTTTTTCCCGCTGAAGCCTTTCCGTTTGTTGACGGGCGACGTATGCTGGTTCGGTAGTATGCAATCACTTTCCTGTGGGACTTCTCCCAGGGTGTCCGTGTCGCGCTGTTTATTGTTCAATTTGCTGTGGGAGGAGGGCAGCGGCTTCAGGACGGTCACCGGCACCAGCCCTTCCTGGCTGTCGGACGCGTTGATCGACAGACGCACCAGGCAGTAGTCGGGCGCGCCCGAACAGTTCATGTCGACGATTTCGACCTGCTGACCTTTGCTGACGCCCAGC]
[-] EMBL BM646291             [     CTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTTGCTGATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCGGAACTGTGTCGGGAGCCATTTTTTCCCGCTGAAGCCTTTCCGTTTGTTGACGGGCGACGTATGCTGGTTCGGTAGTATGCAATCACTTTCCTGTGGGACTTCTCCCAGGGTGTCCGTGTCGCGCTGTTTATTGTTCAATTTGCTGTGGGAGGAGGGCAGCGGCTTCAGGACGGTCACCGGCACCAGCCCTTCCTGGCTGTCGGACGCGTTGATCGACAGACGCACCAGGCAGTAGTCGGGCGCGCCCGAACAGTTCATGTCGACGATTTCGACCTGCTGACCTTTGCTcgg       ]




>consensus_3366#1
CTGCTCTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTT
GCTAATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCG
GAACTGTGTCGGGAGCCATTTTTTCCCGCTGAAGCCTTTCCGTTTGTTGACGGGCGACGT
ATGCTGGTTCGGTAGTATGCAATCACTTTCCTGTGGGACTTCTCCCAGGGTGTCCGTGTC
GCGCTGTTTATTGTTCAATTTGCTGTGGGAGGAGGGCAGCGGCTTCAGGACGGTCACCGG
CACCAGCCCTTCCTGGCTGTCGGACGCGTTGATCGACAGACGCACCAGGCAGTAGTCGGG
CGCGCCCGAACAGTTCATGTCGACGATTTCGACCTGCTGACCTTTGCTGACGCCCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3366#0      CTGCTCTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTT 60
consensus_3366#1      CTGCTCTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTT 60
                      ************************************************************

consensus_3366#0      GCTGATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCG 120
consensus_3366#1      GCTAATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCG 120
                      *** ********************************************************

consensus_3366#0      GAACTGTGTCGGGAGCCATTTTTTCCTGAAGCACACATTCCCTCCACCGGCACATATTTT 180
consensus_3366#1      GAACTGTGTCGGGAGCCATTTTTTCCCGCTGAAGCCTTTCCGTTTGTTGACGGGCGACGT 180
                      ************************** *  * *  * **** *     * *        *

consensus_3366#0      ATCTTTGTACTGATAAAGCAGCGTCATTTTCACTGCTGCACCACCCCACATGATGGGGGA 240
consensus_3366#1      ATGCTGGT-TCGGTAGTATGCAATCACTTTC-CTGTGGGACTTCTCC-CAGGGTGTCCGT 237
                      **  * **   * **        *** **** ***  * **  * ** ** * **   * 

consensus_3366#0      GAGAGGGGCCGTCGTTTTGTGTATCGATATCACTACGTCACGCGCAGCAGTAGTAGCTGC 300
consensus_3366#1      GTCG-----CGCTGTTTATTGTTCAATTTGCTGTGGGAGGAGGGCAGCGGCTTCAGG-AC 291
                      *        **  ****  ***     *  *  *  *    * ***** *    **   *

consensus_3366#0      AGCCACAAACAAGCAAAAACGAATAAACTAGATACACTCTAACCACAACGCAATTCCGGT 360
consensus_3366#1      GGTCACCGGCAC-CAGCCCTTCCTGGCTGTCGGACGCGTTGATCGACAGACGCACC---- 346
                       * ***   **  **        *         ** *  * * *   *  *    *    

consensus_3366#0      TAGACACAATTCCGATTAGAAAACTGAGCAATCACTGAGTTAGTTTATTTCTTGTTGGTC 420
consensus_3366#1      -AGGCAGTAGTCGGGCGCGC---CCGAACAGTTCATGTCGACGATTTCGACCTGCTGACC 402
                       ** **  * ** *    *    * ** ** *   **     * **    * ** **  *

consensus_3366#0      TTTTGTTGGTCACTGGACAAGAATGGGTTGCGACACGATCTGTCGTCTGTTCGGTANGGT 480
consensus_3366#1      TTT-GCTGACGCCCAGC------------------------------------------- 418
                      *** * **    *  *                                            

consensus_3366#0      ATATACGACGGACTACTCCCCCAA 504
consensus_3366#1      ------------------------