These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [CTTCATACTCCTGCTCCTCTTGACACACATGGCTACTGCATCGCGTCACCCACCACCGTCGTGGGGAATGGATAATTTTCACGCAAACTGGCGGTATGGTGTATAATGGAACGGGCAAAGATTACGCTACCTGCATCCTGCTTGGCGCGATGGCCAATAACGATATTGATGATGTTCGGCGCCGGTACCGTCATGCGTAACGAGTTCTGTTCCACGCGCCGTACATCATCAACCAGTACGAGAATCCGATGCCGATTTCGGTGCAATCCTGGATCCGCATCGACGGATCGGGTAACATCGACACCGCTGGACGCAGAGCGATGACTAACCCGCAATCCCGTACCGGAAACTGGAACCTGCAGGCCGTCGTANGCAGTGCTGGGTACTGGTTNTTCGCACTTNGGACTGTCCGTTTGTTTGGCGTTCACAACGACCTGAATCATCGTGCTCAATCAACTGTGGCCTGAAGAAGNNAATGACGTCAATGCGGCCCCCAAGTCCATCGCTTTACGCATGTACCCCCNNCTCCCCCCCTTCC] [+] EMBL BX619123 [CTTCATACTCCTGCTCCTCTTGACACACATGGCTACTGCATCGCGTCACCCACCACCGTCGTGGGGAATGGATAATTTTCACGCAAACTGGCGGTATGGTGTATAATGGAACGGGCAAAGATTACGCTACCTGCATCCTGCTTGGCGCGATGGCCAATAACGATATTGATGATGTTCGGCGCCGGTACCGTCATGCGTAACGAGTTCTGTTCCACGCGCCGTACATCATCAACCAGTACGAGAATCCGATGCCGATTTCGGTGCAATCCTGGATCCGCATCGACGGATCGGGTAACATCGACACCGCTGGACGCAGAGCGATGACTAACCCGCAATCCCGTACCGGAAACTGGAACCTGCAGGCCGTCGTANGCAGTGCTGGGTACTGGTTNTTCGCACTTNGGACTGTCCGTTTGTTTGGCGTTCACAACGACCTGAATCATCGTGCTCAATCAACTGTGGCCTGAAGAAGNNAATGACGTCAATGCGGCCCCCAAGTCCATCGCTTTACGCATGTACCCCCNNCTCCCCCCCTTCC] consensusID : consensus_3380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [GTTTTCTTCAGCCATGCTTAGCAAACTTACGTAGACGCTTACACGTTTTTCCTGTAACAAAATGGGAAAGTATAGAAATTTTTAAATATTTGTTTGTTCTATTTCAATTCTCAACACAAACAAAATGCTACTGATCAGGAATTAAACTAACGTTTAGATATACACACACACACATACACACATACACACACACAAACACAAGTAACGTGGCAAAACATGTGCACGGTGAATTGAAAAAAAAGGGTCCTATCTTAATGTCCGAACTGTACCTGCAGACCGTCGTAAGCAGTGCTGGCACTGGTTTTCGCACTTGGACTGTCCGTTTGTTGGCGTTCACAACGACCTGAATCATCGTGTTCAATCAACT] [+] EMBL AGA280407 [GTTTTCTTCAGCCATGCTTAGCAAACTTACGTAGACGCTTACACGTTTTTCCTGTAACAAAATGGGAAAGTATAGAAATTTTTAAATATTTGTTTGTTCTATTTCAATTCTCAACACAAACAAAATGCTACTGATCAGGAATTAAACTAACGTTTAGATATACACACACACACATACACACATACACACACACAAACACAAGTAACGTGGCAAAACATGTGCACGGTGAATTGAAAAAAAAGGGTCCTATCTTAATGTCCGAACTGTACCTGCAGACCGTCGTAAGCAGTGCTGGCACTGGTTTTCGCACTTGGACTGTCCGTTTGTTGGCGTTCACAACGACCTGAATCATCGTGTTCAATCAACT] consensusID : consensus_3380#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [CCGCACATCTTCATACTCCTGCTCCTCTTGACACACATGGCTACTGCATCGCGTCACCCACCGACCGTCGTGGGGAATGGATAATTTTCACGCAAACTGGCGGTATGGTGTATAATGGAACGGGCAAAGATGACGCTACCTGCATCCTGCTTGGCGCGATGGCCAATAACGATATTGATGATGTTCGGCGCCGGTACCGTCATGCGTAACGAGTTCTGTTCAACGCGCCGGAACAGTGTCCACGACAGATTTCGTCGATCAGGCTGCCCGAAGTTAACTTATTTTGTCTG] [+] EMBL BM584779 [CCGCACATCTTCATACTCCTGCTCCTCTTGACACACATGGCTACTGCATCGCGTCACCCACCGACCGTCGTGGGGAATGGATAATTTTCACGCAAACTGGCGGTATGGTGTATAATGGAACGGGCAAAGATGACGCTACCTGCATCCTGCTTGGCGCGATGGCCAATAACGATATTGATGATGTTCGGCGCCGGTACCGTCATGCGTAACGAGTTCTGTTCAACGCGCCGGAACAGTGTCCACGACAGATTTCGTCGATCAGGCTGCCCGAAGTTAACTTATTTTGTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3380#0 --------CTTCATACTCCTGCTCCTCTTGACACACATGGCTACTGCATCGCGTCACCCA 52 consensus_3380#2 CCGCACATCTTCATACTCCTGCTCCTCTTGACACACATGGCTACTGCATCGCGTCACCCA 60 consensus_3380#1 -----------------------------------------------------------G 1 consensus_3380#0 CC-ACCGTCGTGGGGAATGGATAATTTTCACGCAAACTGGCG-GTATGGTGTATAATGGA 110 consensus_3380#2 CCGACCGTCGTGGGGAATGGATAATTTTCACGCAAACTGGCG-GTATGGTGTATAATGGA 119 consensus_3380#1 TTTTCTTCAGCCATGCTTAGCAAACTTACGTAGACGCTTACACGTTTTTCCTGTAACAAA 61 * * * * * ** ** * * ** * ** * * *** * consensus_3380#0 ACGGGCAAAGATTACGCTACCTGCATCCTGCTTGGCGCGATGGCCAATAACGATATTGAT 170 consensus_3380#2 ACGGGCAAAGATGACGCTACCTGCATCCTGCTTGGCGCGATGGCCAATAACGATATTGAT 179 consensus_3380#1 ATGGGAAAGTATAGAAATTTTTAAATATTTGTTTGTTCTATTTCAATTCTCAACACAAAC 121 * *** ** ** * * ** * ** * * ** * * * * * * * consensus_3380#0 GATGTTCGGCGCCGGTACCGTCATGCGTAACGAGTTCTGTTCCACGCGCCGTACATCATC 230 consensus_3380#2 GATGTTCGGCGCCGGTACCGTCATGCGTAACGAGTTCTGTTCAACGCGCCGGAA--CAGT 237 consensus_3380#1 AAAATGCTACTGATCAGGAATTAAAC-TAAC--GTTTAGATATACACAC-ACACA-CATA 176 * * * * * * * **** *** * * ** * * * ** consensus_3380#0 AACCAGTACGAGAATCCGATGCCGATTTCGGTGCAATCCTGGATCCGCATCGACGGATCG 290 consensus_3380#2 GTCCACGAC-AGATTTCG---TCGATCAGGCTGC----CCGAAGTTAACTTATTTTGTCT 289 consensus_3380#1 CACACATACACACACACAAACACAAGTAACGTGG----------------CAA------- 213 * ** * * * ** consensus_3380#0 GGTAACATCGACACCGCTGGACGCAGAGCGATGACTAACCCGCAATCCCGTACCGGAAAC 350 consensus_3380#2 G----------------------------------------------------------- 290 consensus_3380#1 ---AACATGTGCACGGTGAATTGAAAAAAAAGGGTCCTATCTTAATGTCC------GAAC 264 consensus_3380#0 TGGAACCTGCAGGCCGTCGTANGCAGTGCTGGGTACTGGTTNTTCGCACTTNGGACTGTC 410 consensus_3380#2 ------------------------------------------------------------ consensus_3380#1 TGTA-CCTGCAGACCGTCGTAAGCAGTGCTGG-CACTGGTTTT-CGCACTTGG-ACTGTC 320 consensus_3380#0 CGTTTGTTTGGCGTTCACAACGACCTGAATCATCGTGCTCAATCAACTGTGGCCTGAAGA 470 consensus_3380#2 ------------------------------------------------------------ consensus_3380#1 CGTTTGTT-GGCGTTCACAACGACCTGAATCATCGTGTTCAATCAACT------------ 367 consensus_3380#0 AGNNAATGACGTCAATGCGGCCCCCAAGTCCATCGCTTTACGCATGTACCCCCNNCTCCC 530 consensus_3380#2 ------------------------------------------------------------ consensus_3380#1 ------------------------------------------------------------ consensus_3380#0 CCCCTTCC 538 consensus_3380#2 -------- consensus_3380#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||