These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3382#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 927 fasta sequence [CCGAATTATTTTTCTACACAAACTCAATGTGTATAAGAGAGTTAGTTAGTTTAGAGAAGAAAAAAAAAAGATTAGATTTTACGTTTTTTTCCCCACGTATCCTTGTTGCCTTGTTTTTGCGCTTACAGCAACAGCGCCTTGTGGCTTGTGGGGATGTTGGTGACACTGTTGTGTTTTCGTTGACGAATTATTAGTAGGAAATGACGAGAATGTTTCGGATAGTGTTTAATGCTAATGAACAGGAGAGGAATATGAAGATTGCGGAAAGGGCCACCGTTTACTTACACTTGCTTCCGATTTTTTCGATTTTTTGTTTTGTGTGCGCCACACTGCTGCAACTGGTTGTGTTTTACACATATATATTATATATGCGCCTTACGGGAGGAAGGATGCGCCGCCAAATCCGGCTTATACTTAGATAGCGTTGCGATGAACGAACGAACAAACGAACGAACAAAAACTAAAAGAACAAAATGTGTGTGTTGACTGTGCGGATTTGTAGTTTAGTTGTCTCTCATCCCTTAGAAAGCGAAGGATACGTGTGTGCGTGTAGAGCTGTAGAGAGAGCTGAGGGAAGAGAAGAACTCTGTTCTGGTTATAACTTACTTTAATTATTGTCGCTTATACAAATCAAAAGGCTCCATTTTAGAAGTCCCCGTCGCGAGTGGAGTGTGGTGAATGTGAAATGGAATTTAAAATTCTCAACATACACACACCCCATCATCCCGTTTTTGTGAGAACCATTATGTTGCAATGTTTAGTATTAAGAAGAGAGGAACGCTGCTTCAATTTATACGCGAACTGATTTTTGCCTTACGTTTTTTTCGTTACACTTTTTGGTGATAAAATTTTGAACATTTATATTTTTAGTCTCGCTCTTGNGGGTTACTGATACTACGAATGCTGTACNAAAATGTATGATGAATA] [+] EMBL BM620752 [CCGAATTATTTTTCTACACAAACTCAATGTGTATAAGAGAGTTAGTTAGTTTAGAGAAGAAAAAAAAAAGATTAGATTTTACGTTTTTTTCCCCACGTATCCTTGTTGCCTTGTTTTTGCGCTTACAGCAACAGCG ] [+] EMBL BX625942 [ CCCATGTAACCTTGTTGCCTTGTTTTTGCGCTTACAGCAACAGCGCCTTGTGGCTTGTGGGGATGTTGGTGACACTGTTGTGTTTTCGTTGACGAATTATTAGTAGGAAATGACGAGAATGTTTCGGATAGTGTTTAATGCTAATGAACAGGAGAGGAATATGAAGATTGCGGAAAGGGCCACCGTTTACTTACACTTGCTTCCGATTTTTTCGATTTTTTGTTTTGTGTGCGCCACACTGCTGCAACTGGTTGTGTTTTACACATATATATTATATATGCGCCTTACGGGAGGAAGGATGCGCCGCCAAATCCGGCTTATACTTAGATAGCGTTGCGATGAACGAACGAACAAACGAACGAACAAAAACTAAAAGAACAAAATGTGTGTGTTGACTGTGCGGATTTGTAGTTTAGTTGTCTCTCATCCCTTAGAAAGCGAAGGATACGTGTGTGCGTGTAGAGCTGTAGAGAGAGCTGAGGGAAGAGAAGAACTCTGTTCTGGTTATAACTTACTTTAATTATTGTCGCTTATACAAATCAAAAGGCTCCATTTTAGAAGTCCCCGTCGCGAGTGGAGTGTGGTGAATGTGAAATGGAATTTAAAATTCTCAACATACACACACCCCATCATCCCGTTTTTGTGAGAACCATTATGTTGCAATGTTTAGTATTAAGAAGAGAGGAACGCTGCTTCAATTTATACGCGAACTGATTTTTGCCTTACGTTTTTTTCGTTACACTTTTTGGTGATAAAATTTTGAACATTTATATTTTTAGTCTCGCTCTTGNGGGTTACTGATACTACGAATGCTGTACNAAAATGTATGATGAATA] consensusID : consensus_3382#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 805 fasta sequence [CTTTTGTTGCAATGTTTAGTATTAAGAAGAGAGGAACGCTGCTTCAATTTATACGCGAACTGATTTTTGCCTTACGTTTTTTTCGTTACACTTTTTGGTGATAAAATTTTGAACATTTATATTTTTAGTCTCGCTCTTGTGGGTTACTGAAAAACTACTCACCGACAAACACACACACATACAGAGAGAGGAGACAGACAGCAAGTTCCCTTTGAAGAAGAAAAAGAAAAACCTGCCCAAATAAAACTCGATGGTACAATGTTAATGAAAGCGTCAGATTTTTAGCATTAAAAACAAATGTACACTTGTATTAACACTTTGATTAAGGTGAAGGTGCGTTAGGGATATGAGGCCGTAGAGCAGCTGCTCAGCCAGGCAATAGTACACTGCACGTATATAGGGCTAATGTATCTATGTTAAATGAATTCCCCGCCTCCTGGCAAATGACCTTTTGTACGTGGAGGGGGGGAAGCCACGATGTGATTATTGTGTGCAACTAGGGAACTCGGCCCTGCACTCGGACCACGTGTTTCGGGTCGGGTCGGGCCGGGTGTGTGTCTCTATCATCCTGACTCTTGCATTTCTCACCCCCCTCCCAGGAGGGGAAAGAATACTTGTTGTGTTATTATATTACGGCTATAAGTGGATAAGCAAAATCCGGAAAACGAATAGATCAATTCCTGTCCTGTGTATGTTTTTTTCCCTCCTCCATTGTAGATGTATACTCGTCGTGATGGGAGTGAAAAAGCTCTATTAAATATTACAACAAAACCCCAAAAATTGCAGAGAACCAGAGACAAGAATG] [+] EMBL BX613605 [CTTTTGTTGCAATGTTTAGTATTAAGAAGAGAGGAACGCTGCTTCAATTTATACGCGAACTGATTTTTGCCTTACGTTTTTTTCGTTACACTTTTTGGTGATAAAATTTTGAACATTTATATTTTTAGTCTCGCTCTTGTGGGTTACTGAAAAACTACTCACCGACAAACACACACACATACAGAGAGAGGAGACAGACAGCAAGTTCCCTTTGAAGAAGAAAAAGAAAAACCTGCCCAAATAAAACTCGATGGTACAATGTTAATGAAAGCGTCAGATTTTTAGCATTAAAAACAAATGTACACTTGTATTAACACTTTGATTAAGGTGAAGGTGCGTTAGGGATATGAGGCCGTAGAGCAGCTGCTCAGCCAGGCAATAGTACACTGCACGTATATAGGGCTAATGTATCTATGTTAAATGAATTCCCCGCCTCCTGGCAAATGACCTTTTGTACGTGGAGGGGGGGAAGCCACGATGTGATTATTGTGTGCAACTAGGGAACTCGGCCCTGCACTCGGACCACGTGTTTCGGGTCGGGTCGGGCCGGGTGTGTGTCTCTATCATCCTGACTCTTGCATTTCTCACCCCCCTCCCAGGAGGGGAAAGAATACTTGTTGTGTTATTATATTACGGCTATAAGTGGATAAGCAAAATCCGGAAAACGAATAGATCAATTCCTGTCCTGTGTATGTTTTTTTCCCTCCTCCATTGTAGATGTATACTCGTCGTGATGGGAGTGAAAAAGCTCTATTAAATATTACAACAAAACCCCAAAAATTGCAGAGAACCAGAGACAAGAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3382#0 CCGAATTATTTTTCTACACAAACTCAATGTGTATAAGAGAGTTA-GTTAGTTTAGAGAAG 59 consensus_3382#1 -------CTTTTGTTGCA-ATGTTTAGTATTAAGAAGAGAGGAACGCTGCTTCAATTTAT 52 **** * ** * * * * * * ******* * * * ** * * consensus_3382#0 AAAAAAAAAAGATTAGATTTTACGTTTTTTTCCCCACGTATCCTTGTTGCCTTGTTTTTG 119 consensus_3382#1 ACGCGAACTGATTTTTGCCTTACGTTTTTTTCGTTACAC-TTTTTGGTGATAAAATTTTG 111 * ** ** ************* ** * *** ** ***** consensus_3382#0 CGCTTACAGCAACAGCGCCTTGTGGCTTGTGGGGATGTTGGTGACACTGTTGTGTTTTCG 179 consensus_3382#1 AACATTTATATTTTTAGTCTCGCT-CTTGTGGGT-TACTGA-AAAACTAC----TCACCG 164 * * * * ** * ******** * ** * *** * ** consensus_3382#0 TTGACGAATTATTAGTAGGAAATGACGAGAATGTTTCGGATAGTGTTTAATGCTAATGAA 239 consensus_3382#1 ACAAACACACACACATACAGAGAGAGGAGACAG--ACAGCAAGTTCCCTTTGAAGAAGAA 222 * * * ** * ** **** * * * *** ** * *** consensus_3382#0 CAGGAGAGGAATATGAAGATTGCGGAAAGGGCCACCGTTTACTTACACTTGCTTCCGATT 299 consensus_3382#1 AAAGAAAAACCTGCCCAAATAAAACTCGATGGTACAATGT--TAATGAAAGCGTCAGATT 280 * ** * * * ** * ** * * * * ** ** **** consensus_3382#0 TTTTCGATTTTTTGTTTTGTGTGCGCC-ACACTGCTGCAACTGGTTGTGTTTTACACATA 358 consensus_3382#1 TTTAGCATTAAAAACAA-ATGTACACTTGTATTAACACT-TTGATTAAGGTGAAGGTGCG 338 *** *** *** * * * * * ** ** * * * consensus_3382#0 TATATTATATATGCGCCTTACGGGAGGAAGGATGCGCCGCCAAATCCGGCTTATACTTAG 418 consensus_3382#1 TTAGGGATATGAG-GCCGTA-GAGCAGCTGCTCAGCCAGGCAATAGTACACTGCACGTAT 396 * **** * *** ** * * * * * * *** * ** ** consensus_3382#0 ATAGCGTTGCGATGAACGAACGAACAAACGAACGAACAAAAACTAAAAGAACAAAATGT- 477 consensus_3382#1 ATAGGGCT--AATGTATCTATGT-TAAATGAATTCCCCGCCTCCTGGCAAATGACCTTTT 453 **** * * *** * * * *** *** * * ** * * * consensus_3382#0 GTGTGTTGACTGTGCGGATTTGTAGTTTAGTTGTCTCTCATCCCTTAGAAAGCGAAGGAT 537 consensus_3382#1 GTACGTGGAGGGGGGGAAGCCACGATGTGATTATTGTGTGCAACTAGGGAACTC--GGCC 511 ** ** ** * * * * * * ** * ** * ** ** consensus_3382#0 ACGTGTGTGCGTGTAGAGCTGTAGAGAGAGCTGAGGGAAGAGAAGAACTCTGTTCTGGTT 597 consensus_3382#1 CTGCACTCGGACCACGTGTTTCGGGTCGGGTCGGGCCGGGTGTGTGTCTCTATCATCCTG 571 * * * * * * * * * * * * **** * * * consensus_3382#0 ATAACTTACTTTAATTATTGTCGCTTATACAAATCAAAAGGCTCCATTTTAGAAGTCCCC 657 consensus_3382#1 ACT-CTTGCATTTCTCACC-CCCCTCCCAGGAGGGGAAAGAATACTTGTTGTGTTATTAT 629 * *** * ** * * * ** * * **** * * * ** consensus_3382#0 GTCGCGAGTGGAGTGTGGTGAATGTGAAATGGAATTTAAAATTCTCAACATACACACACC 717 consensus_3382#1 ATTACGGCTATAAGTGGATAAGCAAAATCCGGAAAACGAA----TAGATCAATTCCTGTC 685 * ** * * * * * * **** ** * * * * * consensus_3382#0 CCATCATCCCGTTTTTGTGAGAACCATTATGTTGCAATGTTTAGT-ATTAAGAAGAGAGG 776 consensus_3382#1 CTGTGTATGTTTTTTTCCCTCCTCCATTGTA----GATGTATACTCGTCGTGATGGGAGT 741 * * ***** ***** * **** ** * * ** * *** consensus_3382#0 AACGCTGCTTCAATTTATACGCGAACTGATTTTTGCCTTACGTTTTTTTCGTTACACTTT 836 consensus_3382#1 GAAAAAGCTCTATTAAATATTACAACAAA-----ACCCCAAAAATTGCAGAGAAC----- 791 * *** * * *** *** * ** * ** ** consensus_3382#0 TTGGTGATAAAATTTTGAACATTTATATTTTTAGTCTCGCTCTTGNGGGTTACTGATACT 896 consensus_3382#1 -CAGAGACAAGAATG--------------------------------------------- 805 * ** ** * * consensus_3382#0 ACGAATGCTGTACNAAAATGTATGATGAATA 927 consensus_3382#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||