These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence [CTATCGAAGCCCAAAGCATTGGAAAAGAGTATTCTGTCGGGAACCAACATAGGGTGAAACAACATTTATCGTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAAGATCGTCTTGGAGAGCAAACTACAAAAAGAAGAAAACAATACAAAAAGTAACAACATATATCCGCAAACGACACAACAAAATAGCGAAAAATGCAATAGCAATATAAAGATAAACAGTAAACTCTCCTTTTCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTATACCGTAGAAGATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGCTTTAGGGAACACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACGAATGTATAAAAGCGTAGCTAGTACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCAATGCTACAATGCCGAGCCTGATTTGTAAACAGTACCCACCCTTTCCTTATCCTTAATTTTGTTTTAGTGTATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAGTCTAGGATTGCAAGCAATTCGGAACCGNTTGATCTCCTGGTAGATATGTGCTAAGAAACGTGTAAAGACAAGCGATAGAAAATATCTAACCCATTTGCCACGAGATAGAGGCGGTGCGATGTGCGATGAGAGAAAGCGAAAACAGTGAAATCAACATACNACAATCACAATTACNAAACATTACCCTGCATAC] [+] EMBL BX625338 [CTATCGAAGCCCAAAGCATTGGAAAAGAGTATTCTGTCGGGAACCAACATAGGGTGAAACAACATTTATCGTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAAGATCGTCTTGGAGAGCAAACTACAAAAAGAAGAAAACAATACAAAAAGTAACAACATATATCCGCAAACGACACAACAAAATAGCGAAAAATGCAATAGCAATATAAAGATAAACAGTAAACTCTCCTTTTCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTATACCGTAGAAGATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGCTTTAGGGAACACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACGAATGTATAAAAGCGTAGCTAGTACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCAATGCTACAATGCCGAGCCTGATTTGTAAACAGTACCCACCCTTTCCTTATCCTTAATTTTGTTTTAGTGTATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAGTCTAGGATTGCAAGCAATTCGGAACCGNTTGATCTCCTGGTAGATATGTGCTAAGAAACGTGTAAAGACAAGCGATAGAAAATATCTAACCCATTTG ] [+] EMBL BX624621 [ GGGTGAAACAACATTTATCGTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAAGATCGTCTTGGAGAGCAAACTACAAAAAGAAGAAAACAATACAAAAAGTAACAACATATATCCGCAAACGACACAACAAAATAGCGAAAAATGCAATAGCAATATAAAGATAAACAGTAAACTCTCCTTTTCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTATACCGTAGAAGATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGCTTTAGGGAACACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACGAATGTATAAAAGCGTAGCTAGTACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCAATGCTACAATGCCGAGCCTGATTTGTAAACAGTACCCACCCTTTCCTTATCCTTAATTTTGTTTTAGTGTATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAGTCTAGGATTGCAAGCAATTCGGAACCGTTTGATCTCCTGTTAGATATGTGCTAAGAAACGTGTAAAGACAAGCGATAGAAAATATCTAACCCATTTGCCACGAGATAGAGGCGGTGCGATGTGCGATGAGAGAAAGCGAAAACAGTGAAATCAACATACNACAATCACAATTACNAAACATTACCCTGCATAC] consensusID : consensus_3389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [CACGCGTCCGGGAAAAGAGTATTCTGTCGGGAACCAACATAGGGTGAAACAACATTTATCGTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAAGATCGTCTTGGAGAGCAAACTACGAAAGGAAGAAAACTATACCAAAGGTAACAACATATATCCGCAAACGACACAACAAAATAGCGAAAAATGCGATAGCAATATAAAGATAAACAGGAAACTCTCCTTTTCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTATACCGTAGAAGATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGCTTTAGGGAACACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACGAATGTATAAAAGCGTAGCTAGGACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCAATGCTACAATGCCGAGCCTGATTTGTAAACAGGACCCACCCTTTCCTTATCCTTAATTTTGTTTTAGTGTATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAGTCTAGGATTGCAAGCAATTCAGAACCGCTTGATCTCCTGTTAGATATGTGC] [+] EMBL BM620486 [CACGCGTCCGGGAAAAGAGTATTCTGTCGGGAACCAACATAGGGTGAAACAACATTTATCGTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAAGATCGTCTTGGAGAGCAAACTACGAAAGGAAGAAAACTATACCAAAGGTAACAACATATATCCGCAAACGACACAACAAAATAGCGAAAAATGCGATAGCAATATAAAGATAAACAGGAAACTCTCCTTTTCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTATACCGTAGAAGATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGCTTTAGGGAACACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACGAATGTATAAAAGCGTAGCTAGGACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCAATGCTACAATGCCGAGCCTGATTTGTAAACAGGACCCACCCTTTCCTTATCCTTAATTTTGTTTTAGTGTATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAGTCTAGGATTGCAAGCAATTCAGAACCGCTTGATCTCCTGTTAGATATGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3389#0 CTATCGAAGCCCAAAGCATTGGAAAAGAGTATTCTGTCGGGAACCAACATAGGGTGAAAC 60 consensus_3389#1 ----------CACGCGTCCGGGAAAAGAGTATTCTGTCGGGAACCAACATAGGGTGAAAC 50 * * **************************************** consensus_3389#0 AACATTTATCGTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAA 120 consensus_3389#1 AACATTTATCGTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAA 110 ************************************************************ consensus_3389#0 GATCGTCTTGGAGAGCAAACTACAAAAAGAAGAAAACAATACAAAAAGTAACAACATATA 180 consensus_3389#1 GATCGTCTTGGAGAGCAAACTACGAAAGGAAGAAAACTATACCAAAGGTAACAACATATA 170 *********************** *** ********* **** *** ************* consensus_3389#0 TCCGCAAACGACACAACAAAATAGCGAAAAATGCAATAGCAATATAAAGATAAACAGTAA 240 consensus_3389#1 TCCGCAAACGACACAACAAAATAGCGAAAAATGCGATAGCAATATAAAGATAAACAGGAA 230 ********************************** ********************** ** consensus_3389#0 ACTCTCCTTTTCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTA 300 consensus_3389#1 ACTCTCCTTTTCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTA 290 ************************************************************ consensus_3389#0 TACCGTAGAAGATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGC 360 consensus_3389#1 TACCGTAGAAGATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGC 350 ************************************************************ consensus_3389#0 TTTAGGGAACACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACG 420 consensus_3389#1 TTTAGGGAACACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACG 410 ************************************************************ consensus_3389#0 AATGTATAAAAGCGTAGCTAGTACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCA 480 consensus_3389#1 AATGTATAAAAGCGTAGCTAGGACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCA 470 ********************* ************************************** consensus_3389#0 ATGCTACAATGCCGAGCCTGATTTGTAAACAGTACCCACCCTTTCCTTATCCTTAATTTT 540 consensus_3389#1 ATGCTACAATGCCGAGCCTGATTTGTAAACAGGACCCACCCTTTCCTTATCCTTAATTTT 530 ******************************** *************************** consensus_3389#0 GTTTTAGTGTATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAG 600 consensus_3389#1 GTTTTAGTGTATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAG 590 ************************************************************ consensus_3389#0 TCTAGGATTGCAAGCAATTCGGAACCGNTTGATCTCCTGGTAGATATGTGCTAAGAAACG 660 consensus_3389#1 TCTAGGATTGCAAGCAATTCAGAACCGCTTGATCTCCTGTTAGATATGTGC--------- 641 ******************** ****** *********** *********** consensus_3389#0 TGTAAAGACAAGCGATAGAAAATATCTAACCCATTTGCCACGAGATAGAGGCGGTGCGAT 720 consensus_3389#1 ------------------------------------------------------------ consensus_3389#0 GTGCGATGAGAGAAAGCGAAAACAGTGAAATCAACATACNACAATCACAATTACNAAACA 780 consensus_3389#1 ------------------------------------------------------------ consensus_3389#0 TTACCCTGCATAC 793 consensus_3389#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||