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Anopheles gambiae
cluster # 3389 cluster # 3389       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3389#0 length = 793 sequences # 2  
consensus_3389#1 length = 641 sequences # 1  

consensusID : consensus_3389#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 793
fasta sequence
                              [CTATCGAAGCCCAAAGCATTGGAAAAGAGTATTCTGTCGGGAACCAACATAGGGTGAAACAACATTTATCGTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAAGATCGTCTTGGAGAGCAAACTACAAAAAGAAGAAAACAATACAAAAAGTAACAACATATATCCGCAAACGACACAACAAAATAGCGAAAAATGCAATAGCAATATAAAGATAAACAGTAAACTCTCCTTTTCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTATACCGTAGAAGATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGCTTTAGGGAACACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACGAATGTATAAAAGCGTAGCTAGTACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCAATGCTACAATGCCGAGCCTGATTTGTAAACAGTACCCACCCTTTCCTTATCCTTAATTTTGTTTTAGTGTATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAGTCTAGGATTGCAAGCAATTCGGAACCGNTTGATCTCCTGGTAGATATGTGCTAAGAAACGTGTAAAGACAAGCGATAGAAAATATCTAACCCATTTGCCACGAGATAGAGGCGGTGCGATGTGCGATGAGAGAAAGCGAAAACAGTGAAATCAACATACNACAATCACAATTACNAAACATTACCCTGCATAC]

[+] EMBL BX625338             [CTATCGAAGCCCAAAGCATTGGAAAAGAGTATTCTGTCGGGAACCAACATAGGGTGAAACAACATTTATCGTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAAGATCGTCTTGGAGAGCAAACTACAAAAAGAAGAAAACAATACAAAAAGTAACAACATATATCCGCAAACGACACAACAAAATAGCGAAAAATGCAATAGCAATATAAAGATAAACAGTAAACTCTCCTTTTCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTATACCGTAGAAGATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGCTTTAGGGAACACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACGAATGTATAAAAGCGTAGCTAGTACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCAATGCTACAATGCCGAGCCTGATTTGTAAACAGTACCCACCCTTTCCTTATCCTTAATTTTGTTTTAGTGTATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAGTCTAGGATTGCAAGCAATTCGGAACCGNTTGATCTCCTGGTAGATATGTGCTAAGAAACGTGTAAAGACAAGCGATAGAAAATATCTAACCCATTTG                                                                                                ]
[+] EMBL BX624621             [                                                   GGGTGAAACAACATTTATCGTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAAGATCGTCTTGGAGAGCAAACTACAAAAAGAAGAAAACAATACAAAAAGTAACAACATATATCCGCAAACGACACAACAAAATAGCGAAAAATGCAATAGCAATATAAAGATAAACAGTAAACTCTCCTTTTCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTATACCGTAGAAGATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGCTTTAGGGAACACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACGAATGTATAAAAGCGTAGCTAGTACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCAATGCTACAATGCCGAGCCTGATTTGTAAACAGTACCCACCCTTTCCTTATCCTTAATTTTGTTTTAGTGTATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAGTCTAGGATTGCAAGCAATTCGGAACCGTTTGATCTCCTGTTAGATATGTGCTAAGAAACGTGTAAAGACAAGCGATAGAAAATATCTAACCCATTTGCCACGAGATAGAGGCGGTGCGATGTGCGATGAGAGAAAGCGAAAACAGTGAAATCAACATACNACAATCACAATTACNAAACATTACCCTGCATAC]


>consensus_3389#0 CTATCGAAGCCCAAAGCATTGGAAAAGAGTATTCTGTCGGGAACCAACATAGGGTGAAAC AACATTTATCGTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAA GATCGTCTTGGAGAGCAAACTACAAAAAGAAGAAAACAATACAAAAAGTAACAACATATA TCCGCAAACGACACAACAAAATAGCGAAAAATGCAATAGCAATATAAAGATAAACAGTAA ACTCTCCTTTTCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTA TACCGTAGAAGATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGC TTTAGGGAACACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACG AATGTATAAAAGCGTAGCTAGTACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCA ATGCTACAATGCCGAGCCTGATTTGTAAACAGTACCCACCCTTTCCTTATCCTTAATTTT GTTTTAGTGTATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAG TCTAGGATTGCAAGCAATTCGGAACCGNTTGATCTCCTGGTAGATATGTGCTAAGAAACG TGTAAAGACAAGCGATAGAAAATATCTAACCCATTTGCCACGAGATAGAGGCGGTGCGAT GTGCGATGAGAGAAAGCGAAAACAGTGAAATCAACATACNACAATCACAATTACNAAACA TTACCCTGCATAC



consensusID : consensus_3389#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence
                              [CACGCGTCCGGGAAAAGAGTATTCTGTCGGGAACCAACATAGGGTGAAACAACATTTATCGTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAAGATCGTCTTGGAGAGCAAACTACGAAAGGAAGAAAACTATACCAAAGGTAACAACATATATCCGCAAACGACACAACAAAATAGCGAAAAATGCGATAGCAATATAAAGATAAACAGGAAACTCTCCTTTTCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTATACCGTAGAAGATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGCTTTAGGGAACACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACGAATGTATAAAAGCGTAGCTAGGACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCAATGCTACAATGCCGAGCCTGATTTGTAAACAGGACCCACCCTTTCCTTATCCTTAATTTTGTTTTAGTGTATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAGTCTAGGATTGCAAGCAATTCAGAACCGCTTGATCTCCTGTTAGATATGTGC]

[+] EMBL BM620486             [CACGCGTCCGGGAAAAGAGTATTCTGTCGGGAACCAACATAGGGTGAAACAACATTTATCGTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAAGATCGTCTTGGAGAGCAAACTACGAAAGGAAGAAAACTATACCAAAGGTAACAACATATATCCGCAAACGACACAACAAAATAGCGAAAAATGCGATAGCAATATAAAGATAAACAGGAAACTCTCCTTTTCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTATACCGTAGAAGATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGCTTTAGGGAACACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACGAATGTATAAAAGCGTAGCTAGGACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCAATGCTACAATGCCGAGCCTGATTTGTAAACAGGACCCACCCTTTCCTTATCCTTAATTTTGTTTTAGTGTATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAGTCTAGGATTGCAAGCAATTCAGAACCGCTTGATCTCCTGTTAGATATGTGC]


>consensus_3389#1 CACGCGTCCGGGAAAAGAGTATTCTGTCGGGAACCAACATAGGGTGAAACAACATTTATC GTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAAGATCGTCTTG GAGAGCAAACTACGAAAGGAAGAAAACTATACCAAAGGTAACAACATATATCCGCAAACG ACACAACAAAATAGCGAAAAATGCGATAGCAATATAAAGATAAACAGGAAACTCTCCTTT TCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTATACCGTAGAA GATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGCTTTAGGGAAC ACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACGAATGTATAAA AGCGTAGCTAGGACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCAATGCTACAAT GCCGAGCCTGATTTGTAAACAGGACCCACCCTTTCCTTATCCTTAATTTTGTTTTAGTGT ATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAGTCTAGGATTG CAAGCAATTCAGAACCGCTTGATCTCCTGTTAGATATGTGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3389#0      CTATCGAAGCCCAAAGCATTGGAAAAGAGTATTCTGTCGGGAACCAACATAGGGTGAAAC 60
consensus_3389#1      ----------CACGCGTCCGGGAAAAGAGTATTCTGTCGGGAACCAACATAGGGTGAAAC 50
                                *    *    ****************************************

consensus_3389#0      AACATTTATCGTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAA 120
consensus_3389#1      AACATTTATCGTTACCATAGTCGAATAGCAAGAGTGGGCAGTAATGATAAGCGTTGAAAA 110
                      ************************************************************

consensus_3389#0      GATCGTCTTGGAGAGCAAACTACAAAAAGAAGAAAACAATACAAAAAGTAACAACATATA 180
consensus_3389#1      GATCGTCTTGGAGAGCAAACTACGAAAGGAAGAAAACTATACCAAAGGTAACAACATATA 170
                      *********************** *** ********* **** *** *************

consensus_3389#0      TCCGCAAACGACACAACAAAATAGCGAAAAATGCAATAGCAATATAAAGATAAACAGTAA 240
consensus_3389#1      TCCGCAAACGACACAACAAAATAGCGAAAAATGCGATAGCAATATAAAGATAAACAGGAA 230
                      ********************************** ********************** **

consensus_3389#0      ACTCTCCTTTTCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTA 300
consensus_3389#1      ACTCTCCTTTTCCTTCACTTTATCACACCTAGTGATTTCTTACCCAAAATTAATAATTTA 290
                      ************************************************************

consensus_3389#0      TACCGTAGAAGATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGC 360
consensus_3389#1      TACCGTAGAAGATATATTTTCTCAAAGAAAGTTCATAAAATTAGTAAACCTCCGATTTGC 350
                      ************************************************************

consensus_3389#0      TTTAGGGAACACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACG 420
consensus_3389#1      TTTAGGGAACACTAAACGATGTGTTTATACAAAGGAAGCAAACGATGTCAGGAACCCACG 410
                      ************************************************************

consensus_3389#0      AATGTATAAAAGCGTAGCTAGTACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCA 480
consensus_3389#1      AATGTATAAAAGCGTAGCTAGGACGCCTTCTGAGCGAAACAAATTTGCGCGCTAAACTCA 470
                      ********************* **************************************

consensus_3389#0      ATGCTACAATGCCGAGCCTGATTTGTAAACAGTACCCACCCTTTCCTTATCCTTAATTTT 540
consensus_3389#1      ATGCTACAATGCCGAGCCTGATTTGTAAACAGGACCCACCCTTTCCTTATCCTTAATTTT 530
                      ******************************** ***************************

consensus_3389#0      GTTTTAGTGTATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAG 600
consensus_3389#1      GTTTTAGTGTATTGTTCTGTTGCGAGTATTGGTCCTTAGATGCGCGCGCGCGCGCGAGAG 590
                      ************************************************************

consensus_3389#0      TCTAGGATTGCAAGCAATTCGGAACCGNTTGATCTCCTGGTAGATATGTGCTAAGAAACG 660
consensus_3389#1      TCTAGGATTGCAAGCAATTCAGAACCGCTTGATCTCCTGTTAGATATGTGC--------- 641
                      ******************** ****** *********** ***********         

consensus_3389#0      TGTAAAGACAAGCGATAGAAAATATCTAACCCATTTGCCACGAGATAGAGGCGGTGCGAT 720
consensus_3389#1      ------------------------------------------------------------
                                                                                  

consensus_3389#0      GTGCGATGAGAGAAAGCGAAAACAGTGAAATCAACATACNACAATCACAATTACNAAACA 780
consensus_3389#1      ------------------------------------------------------------
                                                                                  

consensus_3389#0      TTACCCTGCATAC 793
consensus_3389#1      -------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)