cluster # 3393

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Anopheles gambiae
cluster # 3393 cluster # 3393 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3393#0 length = 621 sequences # 1

consensus_3393#1 length = 409 sequences # 1
consensus_3393#2 length = 219 sequences # 1

consensusID : consensus_3393#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [CCGATGTTAATTGCCAGCCAGGAACGGGCTGGCTGGCATCTGGCATTAAATTCCATTTAAATATGATCTTTCGAGCCATTTTGTAAAACAGTTGCCCGGAAGAAAAGTCACGGAAGAACAAAACCGATCAGACACGTGTGAAACAACAGGAACAAACGTACTTGATATTAATATAACAAGAATTACCATCATCCCCCTTTGCTCATTGTATGCCACCGCGTGTATTGAATACGCTTTCGCAAAGCATCAGGCTGCTGTTAGTAGAATAATGATAATAATAATAATGCACACAGATATTGGAAATTACGGAAGCAGTGTGATGGATGAAAATCGAACAAAATTACAATTGATCGCCGATCGCTATATGCACAGTATATAGGACAAAAAAACAAAGCGAGCTAGACAAAATTTGCGTACAGATAGTTTTTTTTATACAGCTAAGTTTAGGAGAGTTGTAGGGGAATCCGCAGCGAATCCATTAAAAAAAAAACTAGTAAATTAAAGTGAGTGTGTGCCTGCGAGCGGTGGAACAGGAATCTTGAGCCGATAGTTGAACAGTGGCGGGAACTTTTGGTTAACCTTTTTGCAGGGGAAGAACCGCCGAAATCGTGAAAACCGTTG]

[+] EMBL BM614474             [CCGATGTTAATTGCCAGCCAGGAACGGGCTGGCTGGCATCTGGCATTAAATTCCATTTAAATATGATCTTTCGAGCCATTTTGTAAAACAGTTGCCCGGAAGAAAAGTCACGGAAGAACAAAACCGATCAGACACGTGTGAAACAACAGGAACAAACGTACTTGATATTAATATAACAAGAATTACCATCATCCCCCTTTGCTCATTGTATGCCACCGCGTGTATTGAATACGCTTTCGCAAAGCATCAGGCTGCTGTTAGTAGAATAATGATAATAATAATAATGCACACAGATATTGGAAATTACGGAAGCAGTGTGATGGATGAAAATCGAACAAAATTACAATTGATCGCCGATCGCTATATGCACAGTATATAGGACAAAAAAACAAAGCGAGCTAGACAAAATTTGCGTACAGATAGTTTTTTTTATACAGCTAAGTTTAGGAGAGTTGTAGGGGAATCCGCAGCGAATCCATTAAAAAAAAAACTAGTAAATTAAAGTGAGTGTGTGCCTGCGAGCGGTGGAACAGGAATCTTGAGCCGATAGTTGAACAGTGGCGGGAACTTTTGGTTAACCTTTTTGCAGGGGAAGAACCGCCGAAATCGTGAAAACCGTTG]




>consensus_3393#0
CCGATGTTAATTGCCAGCCAGGAACGGGCTGGCTGGCATCTGGCATTAAATTCCATTTAA
ATATGATCTTTCGAGCCATTTTGTAAAACAGTTGCCCGGAAGAAAAGTCACGGAAGAACA
AAACCGATCAGACACGTGTGAAACAACAGGAACAAACGTACTTGATATTAATATAACAAG
AATTACCATCATCCCCCTTTGCTCATTGTATGCCACCGCGTGTATTGAATACGCTTTCGC
AAAGCATCAGGCTGCTGTTAGTAGAATAATGATAATAATAATAATGCACACAGATATTGG
AAATTACGGAAGCAGTGTGATGGATGAAAATCGAACAAAATTACAATTGATCGCCGATCG
CTATATGCACAGTATATAGGACAAAAAAACAAAGCGAGCTAGACAAAATTTGCGTACAGA
TAGTTTTTTTTATACAGCTAAGTTTAGGAGAGTTGTAGGGGAATCCGCAGCGAATCCATT
AAAAAAAAAACTAGTAAATTAAAGTGAGTGTGTGCCTGCGAGCGGTGGAACAGGAATCTT
GAGCCGATAGTTGAACAGTGGCGGGAACTTTTGGTTAACCTTTTTGCAGGGGAAGAACCG
CCGAAATCGTGAAAACCGTTG

consensusID : consensus_3393#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence

                              [GTTTTTAGGCCAAAAAAAAAAACAAAGCGAGCTAGACAAAATTTGCGAACAGATAGTTTTTTTTAAACAGCTAAGTTTAGGACAGTTGTAGGGGAATCCGCAGCGAATCCATTAAAAAAAACTAGTAAATTAAAGTGAGTGTGTGCCTGCGAGCGGTGGAACAGGAATCTTGAGCCGATAGTTTAACAGTGGCGGAACTTTTAGTTAACCTTTTTGCAGGGAAGAACCGCCGAAATCGTGAAACCGTTGTTGTCTAAATTGTGTGACAAAAGAGAGAGAAGAAGAAAATCAAGCAAACAGAACGACAACAAGCCAATGCCCTCAACATGAACACCGAATGAAAGTATGATAAGCAATGTCTACTTCGCAGAATAAGAAAATAAGTTTATTTATGATAAAGCAAAAAAAA]

[-] EMBL AGA280557            [GTTTTTAGGCCAAAAAAAAAAACAAAGCGAGCTAGACAAAATTTGCGAACAGATAGTTTTTTTTAAACAGCTAAGTTTAGGACAGTTGTAGGGGAATCCGCAGCGAATCCATTAAAAAAAACTAGTAAATTAAAGTGAGTGTGTGCCTGCGAGCGGTGGAACAGGAATCTTGAGCCGATAGTTTAACAGTGGCGGAACTTTTAGTTAACCTTTTTGCAGGGAAGAACCGCCGAAATCGTGAAACCGTTGTTGTCTAAATTGTGTGACAAAAGAGAGAGAAGAAGAAAATCAAGCAAACAGAACGACAACAAGCCAATGCCCTCAACATGAACACCGAATGAAAGTATGATAAGCAATGTCTACTTCGCAGAATAAGAAAATAAGTTTATTTATGATAAAGCAAAAAAAA]




>consensus_3393#1
GTTTTTAGGCCAAAAAAAAAAACAAAGCGAGCTAGACAAAATTTGCGAACAGATAGTTTT
TTTTAAACAGCTAAGTTTAGGACAGTTGTAGGGGAATCCGCAGCGAATCCATTAAAAAAA
ACTAGTAAATTAAAGTGAGTGTGTGCCTGCGAGCGGTGGAACAGGAATCTTGAGCCGATA
GTTTAACAGTGGCGGAACTTTTAGTTAACCTTTTTGCAGGGAAGAACCGCCGAAATCGTG
AAACCGTTGTTGTCTAAATTGTGTGACAAAAGAGAGAGAAGAAGAAAATCAAGCAAACAG
AACGACAACAAGCCAATGCCCTCAACATGAACACCGAATGAAAGTATGATAAGCAATGTC
TACTTCGCAGAATAAGAAAATAAGTTTATTTATGATAAAGCAAAAAAAA

consensusID : consensus_3393#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 219
fasta sequence

                              [CCGGGTAATTCTTGTTATATTAATATCATCCCCCTTTGCTCATTGTATGCCACCGCGTGTATTGAATACGCTTTCGCAAAGCATCAGGCTGCTGTTAGTAGAATAATGATAATAATAATAATGCACACAGATATTGGAAATTACGGAAGCAGTGTGATGGATGAAAATCGAACAAAATTACAATTGATCGCCGATCGCTATATGCACAGTATATAGGAC]

[+] EMBL BM638993             [CCGGGTAATTCTTGTTATATTAATATCATCCCCCTTTGCTCATTGTATGCCACCGCGTGTATTGAATACGCTTTCGCAAAGCATCAGGCTGCTGTTAGTAGAATAATGATAATAATAATAATGCACACAGATATTGGAAATTACGGAAGCAGTGTGATGGATGAAAATCGAACAAAATTACAATTGATCGCCGATCGCTATATGCACAGTATATAGGAC]




>consensus_3393#2
CCGGGTAATTCTTGTTATATTAATATCATCCCCCTTTGCTCATTGTATGCCACCGCGTGT
ATTGAATACGCTTTCGCAAAGCATCAGGCTGCTGTTAGTAGAATAATGATAATAATAATA
ATGCACACAGATATTGGAAATTACGGAAGCAGTGTGATGGATGAAAATCGAACAAAATTA
CAATTGATCGCCGATCGCTATATGCACAGTATATAGGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3393#0      CCGATGTTAATTGCCAGCCAGGAACGGGCTGGCTGGCATCTGGCATTAAATTCCATTTAA 60
consensus_3393#2      ------------------------------------------------------------
consensus_3393#1      ------------------------------------------------------------
                                                                                  

consensus_3393#0      ATATGATCTTTCGAGCCATTTTGTAAAACAGTTGCCCGGAAGAAAAGTCACGGAAGAACA 120
consensus_3393#2      ------------------------------------------------------------
consensus_3393#1      ------------GTTTTTAGGCCAAAAAAAAAAACAAAGCGAGCTAGACAAAATTTGCGA 48
                                                                                  

consensus_3393#0      AAACCGATCAGACACGTGTGAAACAACAGGAACAAACGTACTTGATA-TTAATATAACAA 179
consensus_3393#2      ----------------------------------------CCGGGTAATTCTTGTTATA- 19
consensus_3393#1      ACAGATAGTTTTTTTTAAACAGCTAAGTTTAGGACAGTTGTAGGGGAATCCGCAGCGAAT 108
                                                                 *  * *         * 

consensus_3393#0      GAATTACCATCATCCCCCTTTGCTCATTG--TATGCCACCGCGTGTATTGAATACGCTTT 237
consensus_3393#2      ---TTAATATCATCCCCCTTTGCTCATTG--TATGCCACCGCGTGTATTGAATACGCTTT 74
consensus_3393#1      CCATTAAAAAAAACTAGTAAATTAAAGTGAGTGTGTGCCTGCGAGCGGTGGAACAGGAAT 168
                         ***  *  * *           * **  * **   * *** *   ** *   *   *

consensus_3393#0      CGCAAAGCATCAGGCTGCTGTTAGTAGAA----TAATGA------TAATAATAATAATGC 287
consensus_3393#2      CGCAAAGCATCAGGCTGCTGTTAGTAGAA----TAATGA------TAATAATAATAATGC 124
consensus_3393#1      CTTGAGCCGATAGTTTAACAGTGGCGGAACTTTTAGTTAACCTTTTTGCAGGGAAGAACC 228
                      *   *  *   **  *     * *  ***    ** * *      *   *   *  *  *

consensus_3393#0      ACACAGATATTGGAA-----ATTACGGAAGCAGTGTGATG------------GATGAAAA 330
consensus_3393#2      ACACAGATATTGGAA-----ATTACGGAAGCAGTGTGATG------------GATGAAAA 167
consensus_3393#1      GCCGAAATCGTGAAACCGTTGTTGTCTAAATTGTGTGACAAAAGAGAGAGAAGAAGAAAA 288
                       *  * **  ** **      **    **   ******              ** *****

consensus_3393#0      TCGAACAAA----ATTACAATTGATCGCCGATCGCTATATGCACAGTATATAGGACAAAA 386
consensus_3393#2      TCGAACAAA----ATTACAATTGATCGCCGATCGCTATATGCACAGTATATAGGAC---- 219
consensus_3393#1      TCAAGCAAACAGAACGACAACAAGCCAATGCCCTCAACATGAACACCGAATGAAAGTATG 348
                      ** * ****    *  ****     *   *  * * * *** ***    **   *     

consensus_3393#0      AAACAAAGCGAGCTAGACAAAATTTGCGTACAGATAGTTTTTTTTATACAGCTAAGTTTA 446
consensus_3393#2      ------------------------------------------------------------
consensus_3393#1      ATAAGCAATGTCTACTTCGCAGAATAAGAAAATAAGTTTATTTATGATAAAGCAAAAAAA 408
                                                                                  

consensus_3393#0      GGAGAGTTGTAGGGGAATCCGCAGCGAATCCATTAAAAAAAAAACTAGTAAATTAAAGTG 506
consensus_3393#2      ------------------------------------------------------------
consensus_3393#1      A----------------------------------------------------------- 409
                                                                                  

consensus_3393#0      AGTGTGTGCCTGCGAGCGGTGGAACAGGAATCTTGAGCCGATAGTTGAACAGTGGCGGGA 566
consensus_3393#2      ------------------------------------------------------------
consensus_3393#1      ------------------------------------------------------------
                                                                                  

consensus_3393#0      ACTTTTGGTTAACCTTTTTGCAGGGGAAGAACCGCCGAAATCGTGAAAACCGTTG 621
consensus_3393#2      -------------------------------------------------------
consensus_3393#1      -------------------------------------------------------