These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 742 fasta sequence [GGCGTCCTGGAGATTTGGTTTACGCCAAAATATTTCGCGGCAATTCATGGAGTTGGATTGCAGGGGAGATCATCCGCAGCATCGGCACCGTAATGTACGAAGTCATCACAACGGAGCAACGGAGGCTTCGGCGCCACGTGAATCAGCTCCGTCGTCGTACTACAGTCTCTAGGAAACTAGGAGAGCGGGATGAAGATAATCTGCCGCTACAGATCCTGTTAGAGGAGTGGGGTTTGCCCACGGAACAAAGCTCCACTCCCTTGTCCGAGCCATCAGCGCCTGTGCCCACATCGCAGCCGGATGTCTCAGCATCATCTCCGGCAGCCCCTGTGTTTCGGGAAGCAGCACATCCATCCTTGGGTGTCGAGGACGTCAACCACCAGCAGGCACGACTACCACGACGTTCTTCTAGGAGTAGAAGACTGCCTCGTAGGTTCAGCGCGTACCGGCTGAATTAAAAGGGGGAGGTGTTGGGAAAACTGAGCGCAGCACCGCTACTCAACCCTGTCGCCACGTGACAAGGGCTTGACGTACGCGTTCGGCTAAGCTCGGCGCTGCTCGACTAAGTTCGGGAATGAAGGGCTCGGGATCGGTCTCTTCATCTTTTATCCGCCGACCCGGACGGACGTAGCGCGTGCTCGTCCCGTTTTATCTTGTACAGTGCGTGTCTTGTAAACGCGTCTATTTTATGTAATATGTAATTTGTAAAATAAATAAGTAATAAGTTGCAAACCATAAAAAA] [+] EMBL BX627868 [GGCGTCCTGGAGATTTGGTTTACGCCAAAATATTTCGCGGCAATTCATGGAGTTGGATTGCAGGGGAGATCATCCGCAGCATCGGCACCGTAATGTACGAAGTCATCACAACGGAGCAACGGAGGCTTCGGCGCCACGTGAATCAGCTCCGTCGTCGTACTACAGTCTCTAGGAAACTAGGAGAGCGGGATGAAGATAATCTGCCGCTACAGATCCTGTTAGAGGAGTGGGGTTTGCCCACGGAACAAAGCTCCACTCCCTTGTCCGAGCCATCAGCGCCTGTGCCCACATCGCAGCCGGATGTCTCAGCATCATCTCCGGCAGCCCCTGTGTTTCGGGAAGCAGCACATCCATCCTTGGGTGTCGAGGACGTCAACCACCAGCAGGCACGACTACCACGACGTTCTTCTAGGAGTAGAAGACTGCCTCGTAGGTTCAGCGCGTACCGGCTGAATTAAAAGGGGGAGGTGTTGGGAAAACTGAGCGCAGCACCGCTACTCAACCCTGTCGCCACGTGACAAGGGCTTGACGTACGCGTTCGGCTAAGCTCGGCGCTGCTCGACTAAGTTCGGGAATGAAGGGCTCGGGATCGGTCTCTTCATCTTTTATCCGCCGACCCGGACGGACGTAGCGCGTGCTCGTCCCGTTTTATCTTGTACAGTGCGTGTCTTGTAAACGCGTCTA ] [-] EMBL AGA280561 [ GTTCGGCTAAGCTCGGCGCTGCTCGACTAAGTTCGGGAATGAAGGGCTCGGGATCGGTCTCTTCATCTTTTATCCGCCGACCCGGACGGACGTAGCGCGTGCTCGTCCCGTTTTATCTTGTACAGTGCGTGTCTTGTAAACGCGTCTATTTTATGTAATATGTAATTTGTAAAATAAATAAGTAATAAGTTGCAAACCATAAAAAA] consensusID : consensus_3394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [ATCTAAAAATCAATATCATAAATTGTAGTTACCGTAAGTAAGGATGGTTTGCTGTTGAAATGTTTAACAATGGATGATATAGATCACTTTACCATACATGTTGGGAAAACTGAGCGCAGCACCGCTACTAAACCCTGTCGCCACGTGACAAGGGCTTGACGTACGCGTTCGGCTAAGCTCGGCGCTGCTCGACTAAGTTCGGGAATGAAGGGCTCGGGATCGGTCTCTTCATCTTTTATCCGCCGACCCGGACGGACGTAGCGCGTGCTCGTCCCGTTTTATTTATTGAAGATAATTGCGTGGCGCGCGCAGGGGCCTTTGCAATATTAAAATAAAGTAATACTTAAAATAACCTTACTTGCTATATATTTGAAAACAGACATGAACATTTAAACGTGGCAACTGTAATGTTGAAGTCAAAAAAGCAGTAGAACTTATTGAAAGCTTTACACATTGAAATAATTGGATCATGAGCTCCTCTGGAAGTACGGGCCC] [-] EMBL BX615094 [ATCTAAAAATCAATATCATAAATTGTAGTTACCGTAAGTAAGGATGGTTTGCTGTTGAAATGTTTAACAATGGATGATATAGATCACTTTACCATACATGTTGGGAAAACTGAGCGCAGCACCGCTACTAAACCCTGTCGCCACGTGACAAGGGCTTGACGTACGCGTTCGGCTAAGCTCGGCGCTGCTCGACTAAGTTCGGGAATGAAGGGCTCGGGATCGGTCTCTTCATCTTTTATCCGCCGACCCGGACGGACGTAGCGCGTGCTCGTCCCGTTTTATTTATTGAAGATAATTGCGTGGCGCGCGCAGGGGCCTTTGCAATATTAAAATAAAGTAATACTTAAAATAACCTTACTTGCTATATATTTGAAAACAGACATGAACATTTAAACGTGGCAACTGTAATGTTGAAGTCAAAAAAGCAGTAGAACTTATTGAAAGCTTTACACATTGAAATAATTGGATCATGAGCTCCTCTGGAAGTACGGGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3394#0 GGCGTCCTGGAGATTTGGTTTACGCCAAAATATTTCGCGGCAATTCATGGAGTTGGATTG 60 consensus_3394#1 ------------------------------------------------------------ consensus_3394#0 CAGGGGAGATCATCCGCAGCATCGGCACCGTAATGTACGAAGTCATCACAACGGAGCAAC 120 consensus_3394#1 ------------------------------------------------------------ consensus_3394#0 GGAGGCTTCGGCGCCACGTGAATCAGCTCCGTCGTCGTACTACAGTCTCTAGGAAACTAG 180 consensus_3394#1 ------------------------------------------------------------ consensus_3394#0 GAGAGCGGGATGAAGATAATCTGCCGCTACAGATCCTGTTAGAGGAGTGGGGTTTGCCCA 240 consensus_3394#1 ------------------------------------------------------------ consensus_3394#0 CGGAACAAAGCTCCACTCCCTTGTCCGAGCCATCAGCGCCTGTGCCCACATCGCAGCCGG 300 consensus_3394#1 ------------------------------------------------------------ consensus_3394#0 ATGTCTCAGCATCATCTCCGGCAGCCCCTGTGTTTCGGGAAGCAGCACATCCATCCTTGG 360 consensus_3394#1 ------------------------------------------------------------ consensus_3394#0 GTGTCGAGGACGTCAACCACCAGCAGGCACGACTACCACGACGTTCTTCTAGGAGTAGAA 420 consensus_3394#1 --ATCTAAAA-ATCAAT-ATCATAAATTGTAGTTACCGTAAG-------TAAGGATGGTT 49 ** * * **** * ** * **** * ** * * * consensus_3394#0 GACTGCCTCGTAGGTTCAGCGCGTACCGGCTGAATTAAAAGGGGG-AGGTGTTGGGAAAA 479 consensus_3394#1 TGCTGTTGAAATGTTTAACAATGGATGATATAGATCACTTTACCATACATGTTGGGAAAA 109 *** * ** * * * * ** * * *********** consensus_3394#0 CTGAGCGCAGCACCGCTACTCAACCCTGTCGCCACGTGACAAGGGCTTGACGTACGCGTT 539 consensus_3394#1 CTGAGCGCAGCACCGCTACTAAACCCTGTCGCCACGTGACAAGGGCTTGACGTACGCGTT 169 ******************** *************************************** consensus_3394#0 CGGCTAAGCTCGGCGCTGCTCGACTAAGTTCGGGAATGAAGGGCTCGGGATCGGTCTCTT 599 consensus_3394#1 CGGCTAAGCTCGGCGCTGCTCGACTAAGTTCGGGAATGAAGGGCTCGGGATCGGTCTCTT 229 ************************************************************ consensus_3394#0 CATCTTTTATCCGCCGACCCGGACGGACGTAGCGCGTGCTCGTCCCGTTTTATCTTGTAC 659 consensus_3394#1 CATCTTTTATCCGCCGACCCGGACGGACGTAGCGCGTGCTCGTCCCGTTTTATTTATTGA 289 ***************************************************** * * consensus_3394#0 AG-----TGCGTGTCTTGTAAACGCGTCTATTTTATGT-AATAT---GTAATTTGTAAAA 710 consensus_3394#1 AGATAATTGCGTGGCGCGCGCAGGGGCCTTTGCAATATTAAAATAAAGTAATACTTAAAA 349 ** ****** * * * * * ** * ** * ** ** ***** ***** consensus_3394#0 TAA----ATAAGTAATAAGTTGCAAACCATAAAAAA------------------------ 742 consensus_3394#1 TAACCTTACTTGCTATATATTTGAAAACAGACATGAACATTTAAACGTGGCAACTGTAAT 409 *** * * *** ** *** ** * * * consensus_3394#0 ------------------------------------------------------------ consensus_3394#1 GTTGAAGTCAAAAAAGCAGTAGAACTTATTGAAAGCTTTACACATTGAAATAATTGGATC 469 consensus_3394#0 -------------------------- consensus_3394#1 ATGAGCTCCTCTGGAAGTACGGGCCC 495 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||