cluster # 340

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Anopheles gambiae
cluster # 340 cluster # 340 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_340#0 length = 673 sequences # 1

consensus_340#1 length = 548 sequences # 1

consensusID : consensus_340#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [CCGCGGACGCGTGGGTCGCCAAATGATCACGTGGGTGTTCGGCAAGGAGGATTCAAAGTTTAAAAATTGCGAAAATCTTCAGGTGCTGTAAGCCCAGCCGAGGTGTAATGTTAACGGGGGGAGGTGACATACACCAAAGTAACAATAACATTTTACGTGCGGATCAGGTTGATTCTTATCTTGTTTGCGTATTCAAGCGCCGTTCATTAGAAAAGCAAGTAAGTGAAATTTAAAATGCGATGCAAACAATGACTTTAGGGTTGATTCGATGGAATCAGCGGAAAAAGCCTACAGCATAAAAGAAATATATTAAAGCATAACTGGAAAACAGAAAACGATAAGACAGAGAGCAGAGTAAAAAAGCAACCAAATGCAAACAACTAAACAGCAACAACAACAACATCAAACCGCAACATTGATATCGTTTACACATCTATATGCTAAAAGTGCCTTTGTCAGCGTATCTGAAACTGCTTAGATATGTATAATGAAATGCGATCAGTAGAAAGCAATGGTATAGGACGGTTTCCCATGTCTACGGGACGATTCGTGGAGAACATATTGAATGCAAAAGAGGCGTACAGGGTGCTAAGGGCACAATTATGTGTGAAGGTTATGTGTGTGTTCGGTTCAATCGATAGCAACCGGACACTCGACTCAAAACCAATGGAAA]

[+] EMBL BM625507             [CCGCGGACGCGTGGGTCGCCAAATGATCACGTGGGTGTTCGGCAAGGAGGATTCAAAGTTTAAAAATTGCGAAAATCTTCAGGTGCTGTAAGCCCAGCCGAGGTGTAATGTTAACGGGGGGAGGTGACATACACCAAAGTAACAATAACATTTTACGTGCGGATCAGGTTGATTCTTATCTTGTTTGCGTATTCAAGCGCCGTTCATTAGAAAAGCAAGTAAGTGAAATTTAAAATGCGATGCAAACAATGACTTTAGGGTTGATTCGATGGAATCAGCGGAAAAAGCCTACAGCATAAAAGAAATATATTAAAGCATAACTGGAAAACAGAAAACGATAAGACAGAGAGCAGAGTAAAAAAGCAACCAAATGCAAACAACTAAACAGCAACAACAACAACATCAAACCGCAACATTGATATCGTTTACACATCTATATGCTAAAAGTGCCTTTGTCAGCGTATCTGAAACTGCTTAGATATGTATAATGAAATGCGATCAGTAGAAAGCAATGGTATAGGACGGTTTCCCATGTCTACGGGACGATTCGTGGAGAACATATTGAATGCAAAAGAGGCGTACAGGGTGCTAAGGGCACAATTATGTGTGAAGGTTATGTGTGTGTTCGGTTCAATCGATAGCAACCGGACACTCGACTCAAAACCAATGGAAA]




>consensus_340#0
CCGCGGACGCGTGGGTCGCCAAATGATCACGTGGGTGTTCGGCAAGGAGGATTCAAAGTT
TAAAAATTGCGAAAATCTTCAGGTGCTGTAAGCCCAGCCGAGGTGTAATGTTAACGGGGG
GAGGTGACATACACCAAAGTAACAATAACATTTTACGTGCGGATCAGGTTGATTCTTATC
TTGTTTGCGTATTCAAGCGCCGTTCATTAGAAAAGCAAGTAAGTGAAATTTAAAATGCGA
TGCAAACAATGACTTTAGGGTTGATTCGATGGAATCAGCGGAAAAAGCCTACAGCATAAA
AGAAATATATTAAAGCATAACTGGAAAACAGAAAACGATAAGACAGAGAGCAGAGTAAAA
AAGCAACCAAATGCAAACAACTAAACAGCAACAACAACAACATCAAACCGCAACATTGAT
ATCGTTTACACATCTATATGCTAAAAGTGCCTTTGTCAGCGTATCTGAAACTGCTTAGAT
ATGTATAATGAAATGCGATCAGTAGAAAGCAATGGTATAGGACGGTTTCCCATGTCTACG
GGACGATTCGTGGAGAACATATTGAATGCAAAAGAGGCGTACAGGGTGCTAAGGGCACAA
TTATGTGTGAAGGTTATGTGTGTGTTCGGTTCAATCGATAGCAACCGGACACTCGACTCA
AAACCAATGGAAA

consensusID : consensus_340#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence

                              [GCAGAATCCGCACGATGTAGATAAGGCGACATTCAGCCGGGCCGACCAGCTGCTCAACATGCTGCACGATATGGACGTGAGCCGGTCGCGGCCAACAATACTGGTGGCGAACAAGATCGATTTGGCCCGATCACGAGCGGTTTCTTCGCAGGGTAAACGGGAAATGTCTTGCCTGTACGCACAAAATCAAATTCATCGAGGTATCGGTAGCAATCAACCATAATGTGGACGAATTGCTTGCCGGCATCCTGTCGCAGATACGCCTCAAGCGAGAGCAGTCCGCCGTACAGGGCATTCGAGAACCATCGTCTGCACACTGGTACAAAAATCGCAGCGTTGTGCGGGCATCGATGAAGGCTCGCCAAATGATCACGTGGGTGTTCGGCACAGGAGGATTCAAGAGTTTAAGAAATTGCGAAAATCTTCAGGGTGCTGTAAGCCCAGCCGGGGTGTAAGTGTTAACGGAGGGAGGGGACATACACCGAAAGTANACAGTAACATTTNTACCGTGTGGAATCAGGGTATGAGTCTCAGTCATAGGTGTAGCG]

[+] EMBL BX466127             [GCAGAATCCGCACGATGTAGATAAGGCGACATTCAGCCGGGCCGACCAGCTGCTCAACATGCTGCACGATATGGACGTGAGCCGGTCGCGGCCAACAATACTGGTGGCGAACAAGATCGATTTGGCCCGATCACGAGCGGTTTCTTCGCAGGGTAAACGGGAAATGTCTTGCCTGTACGCACAAAATCAAATTCATCGAGGTATCGGTAGCAATCAACCATAATGTGGACGAATTGCTTGCCGGCATCCTGTCGCAGATACGCCTCAAGCGAGAGCAGTCCGCCGTACAGGGCATTCGAGAACCATCGTCTGCACACTGGTACAAAAATCGCAGCGTTGTGCGGGCATCGATGAAGGCTCGCCAAATGATCACGTGGGTGTTCGGCACAGGAGGATTCAAGAGTTTAAGAAATTGCGAAAATCTTCAGGGTGCTGTAAGCCCAGCCGGGGTGTAAGTGTTAACGGAGGGAGGGGACATACACCGAAAGTANACAGTAACATTTNTACCGTGTGGAATCAGGGTATGAGTCTCAGTCATAGGTGTAGCG]




>consensus_340#1
GCAGAATCCGCACGATGTAGATAAGGCGACATTCAGCCGGGCCGACCAGCTGCTCAACAT
GCTGCACGATATGGACGTGAGCCGGTCGCGGCCAACAATACTGGTGGCGAACAAGATCGA
TTTGGCCCGATCACGAGCGGTTTCTTCGCAGGGTAAACGGGAAATGTCTTGCCTGTACGC
ACAAAATCAAATTCATCGAGGTATCGGTAGCAATCAACCATAATGTGGACGAATTGCTTG
CCGGCATCCTGTCGCAGATACGCCTCAAGCGAGAGCAGTCCGCCGTACAGGGCATTCGAG
AACCATCGTCTGCACACTGGTACAAAAATCGCAGCGTTGTGCGGGCATCGATGAAGGCTC
GCCAAATGATCACGTGGGTGTTCGGCACAGGAGGATTCAAGAGTTTAAGAAATTGCGAAA
ATCTTCAGGGTGCTGTAAGCCCAGCCGGGGTGTAAGTGTTAACGGAGGGAGGGGACATAC
ACCGAAAGTANACAGTAACATTTNTACCGTGTGGAATCAGGGTATGAGTCTCAGTCATAG
GTGTAGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_340#0      CCGCGGACGCGTGGGTCGCCAAATGATCACGTGGGTGTTCGGCAAGGAGGATTCAAAGTT 60
consensus_340#1      -------------------------------------------GCAGAATCCGCACGATG 17
                                                                   **     **   * 

consensus_340#0      TAAAAATTGCGAAAATCTTCAGGTGCTGTAAGCCCAGCCGAGGTGTAATGTTAACGGGGG 120
consensus_340#1      TAGATAAGGCGACATTCAGCCGG-GCCGACCAGCTGCTCAACATGCTGCACGAT---ATG 73
                     ** * *  **** * **  * ** ** *     *    * *  **       *      *

consensus_340#0      GAGGTGACATACACCAAAGTAACAATAACATTTTACGTGCGGATCAGGTTGATTCTTATC 180
consensus_340#1      GACGTGAGCCGGTCGCGGCCAACAATACTGGT-----GGCGAACAAGATCGATT------ 122
                     ** ****      *      *******    *      *** *  ** * ****      

consensus_340#0      TTGTTTGCGTATTCAAGCGCCGTTCATTAGAAAAGCAAGTAAGTGAAATTTAAAATGCGA 240
consensus_340#1      ----TGGCCCGATCACGAGCGGTTTCTTCGCAGGGTAAACGGGAAATGTCTTGCCTGT-A 177
                         * **    *** * ** ***  ** * *  * **    *  *  * *    **  *

consensus_340#0      TGCAAACAATGACTTTAGGGTTGATTCGATGGAATCAGCGGAAAAAGCCTACAGCATAAA 300
consensus_340#1      CGCACAAAATCAAATTCA-------TCGA-GGTATCGGTAGCAATCAACCATAATGTGGA 229
                      *** * *** *  **         **** ** *** *  * **    * * *   *  *

consensus_340#0      AGAAATATATTAAAGCATAAC-TGGAAAACAGAAAACGATAAGACAGAGAGCAGAGTAAA 359
consensus_340#1      CGAATTGCTTGCCGGCATCCTGTCGCAGATACGCCTCAAGCGAGAGCAGTCCGCCGTACA 289
                      *** *   *    ****    * * * * *     * *        **  *   *** *

consensus_340#0      AAAGCAACCAAATGCAAACAACTAAACAGCAACAACAACAACATCAAACCGCAACATTGA 419
consensus_340#1      GG-GCATTCGAGAACCATCGTCTGCACACTGGTA-CAAAA--ATCGCAGCGTTGTGCGGG 345
                        ***  * *   * * *  **  ***     * *** *  ***  * **       * 

consensus_340#0      TATCGTTTACACATCTATATGCTAAAAGTGCCTTTGTCAGCGTATCTGAAACTGCTTAGA 479
consensus_340#1      CATCGATGAAGGCTC-----GCCAAATGATCACGTGGGTGTTCGGCACAGGAGGATTCAA 400
                      **** * *    **     ** *** *  *   **   *     *  *    * **  *

consensus_340#0      TATGTATAATGAAATGCGA---TCAGTAGAAAGCAATGGTATAGGACGGTTTCCCA-TGT 535
consensus_340#1      GA-GTTTAAGAAATTGCGAAAATCTTCAGGGTGCTGTAAGCCCAGCCGGGGTGTAAGTGT 459
                      * ** ***  ** *****   **   **   **  *       * ***  *   * ***

consensus_340#0      CTACGGGACGATTCGTGGAGAACATATTGAATGCAAA-AGAGGCGTACAGGGTGCTAAGG 594
consensus_340#1      TAACGGAGGGAG----GGGACATACACCGAAAGTANACAGTAACATTTNTACCGTGTGGA 515
                       ****   **     **   * * *  *** * * * **   * *       *    * 

consensus_340#0      GCACAATTATGTGTGAAGGTTATGTGTGTGTTCGGTTCAATCGATAGCAACCGGACACTC 654
consensus_340#1      ATCAGGGTATGAGTCTCAGTCATAGGTGTAGCG--------------------------- 548
                            **** **    ** **  ****                               

consensus_340#0      GACTCAAAACCAATGGAAA 673
consensus_340#1      -------------------