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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 762 fasta sequence
[AAGAATCGGCACGATGGGCAAGCGACCGGCGCCTCTGCCGACGAGTGGATCATTTTCAACAAGCAGCAGACGGGATACTATCGCGTCAACTACGACGCACACAACTGGCTGATGATCGCGAACGCTTTGCGCGAGGATCCTTCCGTTATCCATCGTTTCAACCGGGCACAGCTGATCAACGACGCATTCAATCTTGCACGGGCTGGCCGTCACGACTTGGCCCTCACATTGGACCTGCTGCGATATCTCTCCAACGAGCACGAATACGCCCCGTGGGCTGCGGCCAACGGTGTCCTGAACTACTTCTACAACAAGCTCCGTGGAACGGCCAACTATCACGACTTCATCGTGTACGTCGATGCTCTCATTGGCCCAGTCTTTGACAGCCTCGGTGACATCGCTACTGTGCCCGAGGACGAAACGCTACTCGACAAGTACCTGAAGCAACTCATCTCGACCTGGGCCTGCCGGGTTGGCTACACCGAGTGTCTTCGCCAAACGGCCGAAGCTTTGCATACGGCCGTCGAAACGAACACCCCAGTGCATCCGGACGTGTCGTACGTGGTGTATTGCTATGGTCTCAAGGGGTGCTACCGATGACGAGTACCGTTGGGTTATTCGATCAGATGATCAACTCCAACAAACGAAAGCCGAGGCGACAGCTGCTTGATCGATTGCGCCTGGGCTGGTGCTTCAAGGACCAATTCTCAACTCATCTTCGCTTGCTTTACCGTTGCCCATTGGTAAGCAAATTTCCCGAGG]
[+] EMBL BX468388 [AAGAATCGGCACGATGGGCAAGCGACCGGCGCCTCTGCCGACGAGTGGATCATTTTCAACAAGCAGCAGACGGGATACTATCGCGTCAACTACGACGCACACAACTGGCTGATGATCGCGAACGCTTTGCGCGAGGATCCTTCCGTTATCCATCGTTTCAACCGGGCACAGCTGATCAACGACGCATTCAATCTTGCACGGGCTGGCCGTCACGACTTGGCCCTCACATTGGACCTGCTGCGATATCTCTCCAACGAGCACGAATACGCCCCGTGGGCTGCGGCCAACGGTGTCCTGAACTACTTCTACAACAAGCTCCGTGGAACGGCCAACTATCACGACTTCATCGTGTACGTCGATGCTCTCATTGGCCCAGTCTTTGACAGCCTCGGTGACATCGCTACTGTGCCCGAGGACGAAACGCTACTCGACAAGTACCTGAAGCAACTCATCTCGACCTGGGCCTGCCGGGTTGGCTACACCGAGTGTCTTCGCCAAACGGCCGAAGCTTTGCATACGGCCGTCGAAACGAACACCCCAGTGCATCCGGACGTGTCGTACGTGGTGTATTGCTATGGTCTCAAGGGGTGCTACCGATGACGAGTACCGTTGGGTTATTCGATCAGATGATCAACTCCAACAAACGAAAGCCGAGGCGACAGCTGCTTGATCGATTGCGCCTGGGCTGGTGCTTCAAGGACCAATTCTCAACTCATCTTCGCTTGCTTTACCGTTGCCCATTGGTAAGCAAATTTCCCGAGG]
consensusID : consensus_3414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence
[CCGGACGTGCTCCCGGACGGATACACCGTCAAGCAGTTGATGGATAGCTGGACCACGGAGCCCGGCTACCCGGTGCTGACTGTGCGCCGTAACTACAACGATGGTTCGGCGATCCTTTCGCAGGAGCGGTTCTACGCTGACAAACGTTCCCCGAACGCCAACGTCTGGTACATTCCGTACTCTTTCGCCAGTGCTTCCAGCCCAGACTTTGAGGACCTTTCCGACTTCCAGTGGCTGTCGACCAAGGCCGAACGTATTGAAACCGGCGCTTCTGCCGACGAGTGGATCATTTTCAACAAGCAGCAGACGGGATACTATCGCGTCAACTACGACGCACACAACTGGCTGATGATTGCGAACGCTTTGCGCGAGGATCCTTCCGCTATCCATCGTTTCAACCGGGCACAGCTGATCAACGACGCATTCAATCTTGCACGGGCTGGCCGTCACGACTTGGCCCTCACATTGGACCTGCTGCGATATCTCTCCAACGAGCACGAATACGCCCCGTGGGCTGCGGCCAACGGTGTCCTGAACTACTTCTACAACAAGCTCCGTGGAACGGCCAACTATCACGACTTCATCGTGTACGTCGATGCTCTCATTGGCCCAGTCTTTGACAGCTTCGGTGACATCGCTACTGTGCCCGAGGACGAAACGCTACTCGACAAGTACCTGAAGCAACTCATCTCGACCTGGGGCCTGCCGGG]
[+] EMBL BM581182 [CCGGACGTGCTCCCGGACGGATACACCGTCAAGCAGTTGATGGATAGCTGGACCACGGAGCCCGGCTACCCGGTGCTGACTGTGCGCCGTAACTACAACGATGGTTCGGCGATCCTTTCGCAGGAGCGGTTCTACGCTGACAAACGTTCCCCGAACGCCAACGTCTGGTACATTCCGTACTCTTTCGCCAGTGCTTCCAGCCCAGACTTTGAGGACCTTTCCGACTTCCAGTGGCTGTCGACCAAGGCCGAACGTATTGAAACCGGCGCTTCTGCCGACGAGTGGATCATTTTCAACAAGCAGCAGACGGGATACTATCGCGTCAACTACGACGCACACAACTGGCTGATGATTGCGAACGCTTTGCGCGAGGATCCTTCCGCTATCCATCGTTTCAACCGGGCACAGCTGATCAACGACGCATTCAATCTTGCACGGGCTGGCCGTCACGACTTGGCCCTCACATTGGACCTGCTGCGATATCTCTCCAACGAGCACGAATACGCCCCGTGGGCTGCGGCCAACGGTGTCCTGAACTACTTCTACAACAAGCTCCGTGGAACGGCCAACTATCACGACTTCATCGTGTACGTCGATGCTCTCATTGGCCCAGTCTTTGACAGCTTCGGTGACATCGCTACTGTGCCCGAGGACGAAACGCTACTCGACAAGTACCTGAAGCAACTCATCTCGACCTGGGGCCTGCCGGG]
consensusID : consensus_3414#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[CCGGAGTGTCTTCGCCAAACGGCCGAAGCTTTGCATACGGCCGTCGAAACGAACACCCCAGTGCATCCGGACGTGTCGTACGTGGTGTATTGCTATGGTCTCAAGGGTGCTACCGATGACGAGTACCGTTGGTTATTCGATCAGATGATCAACTCCAACAACGAAGCCGAGCGACAGCTGCTGATCGATGCGCTGGGCTGTGCTCAGGACCAATCTCAACTCATCTCGCTGCTTACCGTTGCCATTGGTAGCAATTCCGAGCTGAACAGCTTGCTGAACGGTGAGCGATCCCGCATCGTTTCCTCGATCTACTCGGCCGGTCGGTTTGGCGTGGAGGCGATGATTGAGGCCCTATCGGATCCCTTGTTGGCTCAGGAGTTTGTTGGTCGCTTCGGCCAGGGAACACTGAACAACGTCGTTTCGAATGTGGCCTCGCGTACCAACAACGACGGAGAGCTGGAACAGCTGGAGCAGTTCTTGGCCGCTCTGGGTGATTTGATCAGCCCCGAAACGGCTGCCGCTGCGGTACGTACCGTTAAGACAAATGCCGCTTGGTTCGAAACGTACGAAGGAGTCCTCTCTACGACGTACTTTTCTGACTTTACCAACTAATTTGAACGACACTGATTAGGACAGAGTTTGATTTTGTGTAATGCAATAAAAATACAACTTGATTAAAAAATAGT]
[+] EMBL BM629187 [CCGGAGTGTCTTCGCCAAACGGCCGAAGCTTTGCATACGGCCGTCGAAACGAACACCCCAGTGCATCCGGACGTGTCGTACGTGGTGTATTGCTATGGTCTCAAGGGTGCTACCGATGACGAGTACCGTTGGTTATTCGATCAGATGATCAACTCCAACAACGAAGCCGAGCGACAGCTGCTGATCGATGCGCTGGGCTGTGCTCAGGACCAATCTCAACTCATCTCGCTGCTTACCGTTGCCATTGGTAGCAATTCCGAGCTGAACAGCTTGCTGAACGGTGAGCGATCCCGCATCGTTTCCTCGATCTACTCGGCCGGTCGGTTTGGCGTGGAGGCGATGATTGAGGCCCTATCGGATCCCTTGTTGGCTCAGGAGTTTGTTGGTCGCTTCGGCCAGGGAACACTGAACAACGTCGTTTCGAATGTGGCCTCGCGTACCAACAACGACGGAGAGCTGGAACAGCTGGAGCAGTTCTTGGCCGCTCTGGGTGATTTGATCAGCCCCGAAACGGCTGCCGCTGCGGTACGTACCGTTAAGACAAATGCCGCTTGGTTCGAAACGTACGAAGGAGTCCTCTCTACGACGTACTTTTCTGACTTTACCAACTAATTTGAACGACACTGATTAGGACAGAGTTTGATTTTGTGTAATGCAATAAAAATACAACTTGATTAAAAAATAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3414#0 ------------------------------------------------------------
consensus_3414#1 -CCGGACGTGCTC-CCGGACGGATACACCGTCAAGCA-GTTGATGGATAGCTGGACCACG 57
consensus_3414#2 CCGGAGTGTCTTCGCCAAACGGCCGAAGCTTTGCATACGGCCGTCGAAACGAACACCCCA 60
consensus_3414#0 ------------------------------------------------------------
consensus_3414#1 GAGCCCGGCTACCCGGTGCTGACTGTGCGCCGTAACTACAACGATGGTTCGGCGATCCTT 117
consensus_3414#2 GTGCATCCGGACGTGTCGTACGTGGTGTATTGCTATGGTCTCAAGGGTGCTACCGATGAC 120
consensus_3414#0 ------------------------------------------------------------
consensus_3414#1 TCGCAGGAGCGGTTCTACGCTGACAAACGTTCCCCGAACGCCAACGTCTGGTACATTCCG 177
consensus_3414#2 GAGTACCGTTGGTTATTCGAT--CAGATGATC----AACTCCAACAACGAAGCCGAGCGA 174
consensus_3414#0 ----------------------------------------------------AAGAATCG 8
consensus_3414#1 TACTCTTTCGCCAGTGCTTCCAGCCCAGACTTTGAGGACCTTTCCGACTTCCAGTGGCTG 237
consensus_3414#2 CAGCTGCTGATCGATGCGCTGGGCTGTG---CTCAGGACCAATCTCAACTCATCTCGCTG 231
*
consensus_3414#0 GC-ACGATGGGCAAGCG-------ACCGGCGCCTCTGCCGACGAGTGGATCATTTTCAAC 60
consensus_3414#1 TCGACCAAGGCCGAACGTATTGAAACCGGCGCTTCTGCCGACGAGTGGATCATTTTCAAC 297
consensus_3414#2 CTTACCGTTGCCATTGG---------TAGCAATTC------CGAGCTGAACAGCTT-GCT 275
** * * * ** ** **** ** ** **
consensus_3414#0 AAGCAGCAGACGGGATACTATCGCGTCAACTACGACGCACACAACTGGCTGATG-ATCGC 119
consensus_3414#1 AAGCAGCAGACGGGATACTATCGCGTCAACTACGACGCACACAACTGGCTGATG-ATTGC 356
consensus_3414#2 GAACGGTGAGCGATCCCGCATCGTTTC---CTCGATCTACTCGGCCGGTCGGTTTGGCGT 332
* * * ** **** ** *** ** * * ** * * *
consensus_3414#0 GAACGCTTTGCGCGAGGATCCTTCCGTTATCCATCGTTTCAACCGGGCACAGCTGATCAA 179
consensus_3414#1 GAACGCTTTGCGCGAGGATCCTTCCGCTATCCATCGTTTCAACCGGGCACAGCTGATCAA 416
consensus_3414#2 GGAGGCGATGATTGAGGCCCTATCGG--ATCCCTTGTTGGCTCAGGAGTTTGTTGGTCGC 390
* * ** ** **** * ** * **** * *** * ** * ** **
consensus_3414#0 CGACGC-ATTCAATCTTGCACGGGCTGGCCGTCACGACTTGGCCCTCACATTGGACCTGC 238
consensus_3414#1 CGACGC-ATTCAATCTTGCACGGGCTGGCCGTCACGACTTGGCCCTCACATTGGACCTGC 475
consensus_3414#2 TTCGGCCAGGGAACACTGAACAAC---GTCGTTTCGAATGTGGCCTCGCGTACCAACAAC 447
** * ** ** ** * *** *** * * **** * * * * *
consensus_3414#0 TGCGATATCTCTCCAACGAGCACGAATACGCCCCGTGGGCTGCGGCCAAC--GGT--GTC 294
consensus_3414#1 TGCGATATCTCTCCAACGAGCACGAATACGCCCCGTGGGCTGCGGCCAAC--GGT--GTC 531
consensus_3414#2 GACGG-AGAGCTGGAAC-AGCTGGAGCAGTTCTTGGCCGCTCTGGGTGATTTGATCAGCC 505
** * ** *** *** ** * * * *** ** * * * * *
consensus_3414#0 CTGAA----CTACTTCTACAACAAGCTCCGTGGAACGGCCAACTATCACG-ACTTCATCG 349
consensus_3414#1 CTGAA----CTACTTCTACAACAAGCTCCGTGGAACGGCCAACTATCACG-ACTTCATCG 586
consensus_3414#2 CCGAAACGGCTGCCGCTGCGGTACGTACCGTTAA---GACAAATGCCGCTTGGTTCGAAA 562
* *** ** * ** * * * **** * * *** * * * ***
consensus_3414#0 TGTACGTCGATGCTCTCATTGGCCCAGTCTTTGACAGCCTCGGTGAC--ATCGCTACTGT 407
consensus_3414#1 TGTACGTCGATGCTCTCATTGGCCCAGTCTTTGACAGCTTCGGTGAC--ATCGCTACTGT 644
consensus_3414#2 CGTACGAAGGAGTCCTCTCTACGACGTACTTTTCTGACTTTACCAACTAATTTGAACGAC 622
***** * * *** * * **** * * ** ** **
consensus_3414#0 GCCCG--AGGACGAAACGCTACTCGACAAGTACCTGAAGCAACTCATCTCGACCTGGG-C 464
consensus_3414#1 GCCCG--AGGACGAAACGCTACTCGACAAGTACCTGAAGCAACTCATCTCGACCTGGGGC 702
consensus_3414#2 ACTGATTAGGACAGAGTTTGATTTTGTGTAATGCAATAAAAATACAACTTGATTAAAAAA 682
* ***** * * * * * ** ** ** **
consensus_3414#0 CTGCCGGGTTGGCTACACCGAGTGTCTTCGCCAAACGGCCGAAGCTTTGCATACGGCCGT 524
consensus_3414#1 CTGCCGGG---------------------------------------------------- 710
consensus_3414#2 TAGT-------------------------------------------------------- 686
*
consensus_3414#0 CGAAACGAACACCCCAGTGCATCCGGACGTGTCGTACGTGGTGTATTGCTATGGTCTCAA 584
consensus_3414#1 ------------------------------------------------------------
consensus_3414#2 ------------------------------------------------------------
consensus_3414#0 GGGGTGCTACCGATGACGAGTACCGTTGGGTTATTCGATCAGATGATCAACTCCAACAAA 644
consensus_3414#1 ------------------------------------------------------------
consensus_3414#2 ------------------------------------------------------------
consensus_3414#0 CGAAAGCCGAGGCGACAGCTGCTTGATCGATTGCGCCTGGGCTGGTGCTTCAAGGACCAA 704
consensus_3414#1 ------------------------------------------------------------
consensus_3414#2 ------------------------------------------------------------
consensus_3414#0 TTCTCAACTCATCTTCGCTTGCTTTACCGTTGCCCATTGGTAAGCAAATTTCCCGAGG 762
consensus_3414#1 ----------------------------------------------------------
consensus_3414#2 ----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||