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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1035 fasta sequence
[CCGGCAAAAGTGACGCGTCGCTGGACATGGACGAAGCGGGTGACCCACAGGACGGGGACGATGCTGCAGCAGCGCAGGAACAGTGCCCGGGTGTTCCGGTCGTTGCACCACCCGATCAGGTAGAAGAAGGGCAGCAGCTGCAGCAGCCAGGCATTAAATCGTCCGATAATGTTACCGGTTCGCCGCAAACCGAGCGGAAAGCTGCTGACAATGCTGGCCCATTGCCGCTGGTGGAGGATGTCGGTGGGAAAAGCTGCAGCCAGCACTCGTCCATGAGCTCGGACCGGTCGATTAGGTGCGAGCAGGTTGACCGGGCACCGATGGCCCGGCAGCGACCGGCCAAATACCAGAAGACGGTCCCGAGCCCCCGCGTGAAGCTGAAGAAGCACAGCCAGCTGTCGGTGAGCGCACGGCTGGAGAAGTGTCGCCAGAAGCAGAAGCATCTGGCGCGGGAAATGCGCTTCGGGCTGCCCGACCATGCGGCGGTGTTTCTTAAGGACGCACGCTTCCGGTGGAACGACACGGGGGCAGACGACACCATGACACACTGTGCGCTACACATTGAGCAGCTGACCGTGCCGAAAGCCAAACTGACCGTCATTGTTGGGCGTAGCGGGAGCGGCAAATCGTCCCTGCTGGCTGCGCTGCTCAAAGAGATAAATCATCTTTCCGGCGAACTGATCTGGAATAAATACTCATCGATTGCGTACGTTCCGCAGAAACCGTGGCTACAGAACGCCACCATCCGGGAGAACGTCCTGTTCGGCGAGAGCTTCCGGCCGAAACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACCTCGACCTGATGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCAGCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGATGATCCATTGTCCGCCCTAGACAACGAGGTCGCCATGGACGTTTTCGAGAACGGTGTCCACCGGATGCTGGCACGCCAAA]
[+] EMBL BM623530 [CCGGCAAAAGTGACGCGTCGCTGGACATGGACGAAGCGGGTGACCCACAGGACGGGGACGATGCTGCAGCAGCGCAGGAACAGTGCCCGGGTGTTCCGGTCGTTGCACCACCCGATCAGGTAGAAGAAGGGCAGCAGCTGCAGCAGCCAGGCATTAAATCGTCCGATAATGTTACCGGTTCGCCGCAAACCGAGCGGAAAGCTGCTGACAATGCTGGCCCATTGCCGCTGGTGGAGGATGTCGGTGGGAAAAGCTGCAGCCAGCACTCGTCCATGAGCTCGGACCGGTCGATTAGGTGCGAGCAGGTTGACCGGGCACCGATGGCCCGGCAGCGACCGGCCAAATACCAGAAGACGGTCCCGAGCCCCCGCGTGAAGCTGAAGAAGCACAGCCAGCTGTCGGTGAGCGCACGGCTGGAGAAGTGTCGCCAGAAGCAGAAGCATCTGGCGCGGGAAATGCGCTTCGGGCTGCCCGACCATGCGGCGGTGTTTCTTAAGGACGCACGCTTCCGGTGGAACGACACGGGGGCAGACGACACCATGACACACTGTGCGCTACACATTGAGCAGCTGACCGTGCCGAAAGCCAAACTGACCGTCATTGTTGGGCGTAGCGGGAGCGGCAAATCGTCCCTGCTGGCTGCGCTGCTCAAAGAGATAAATCATCTTTCCGGCGAACTGATCTGGAATAAATACTCA ]
[+] EMBL BM617724 [ ccGCGCACGGTTGGAGAAGTGTCGCCAGAAGCAGAAGCATCTGGCGCGGGAAATGCGCTTCGGGCTGCCCGACCATGCGGCGGTGTTTCTTAAGGACGCACGCTTCCGGTGGAACGACACGGGGGCAGACGATACCATGGCACACTGTGCGCTACACATTGAGCAGCTGACCGTGCCGAAAGCCAAACTGACCGTCATTGTTGGGCGTAGCGGGAGCGGCAAATCGTCCCTGCTGGCTGCGCTGCTCAAAGAGATAAATCATCTTTCCGGCGAACTGATCTGGAATAAATACTCATCGATTGCGTACGTTCCGCAGAAACCGTGGCTACAGAACGCCACCATCCGGGAGAACGTCCTGTTCGGCGAGAGCTTCCGGCCGAAACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACCTCGACCTGATGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCAGCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGATGATCCATTGTCCGCCCTAGACAACGAGGTCGCCATGGACGTTTTCGAGAACGGTGTCCACCGGATGCTGGCACGCCAAA]
consensusID : consensus_3437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[CCGCCGTTTCGGGGTGGGTTGTTTTTTGTTTCAGATACTCATCGATTGCGTACGTTCCGCAGAAACCGTGGCTACAGAACGCCACCATCCGGGAGAACGTCCTGTTCGGCGAGAGCTTCCGGCCGAAACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACCTCGACCTGATGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCAGCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGTAAGTGCGTATGTGCGTTGTGGGCGGTGGAGGGGTTTTTCGTGTTTTGTTTTATTTATTCGGCGCTTTGATTTGATTGTGCTCGGGAGAAAGTTAATTGGTTTTAGATTTTTTTTTAATTTTAAATGTCTTTTTCAAATGTGTTTTGTTTGAACAATATAGTTGTATCGGTTATGATTTTTGAATCAATATTTTTCGTGGCTATGTATATTTTATACATTCTATTTCTCTACTATAATTCCAGACAATAGAGAAGTGTCTTCTGTTCAAAGTTTCCATTTTTTTAAACAACAAATAGTACTACTACATCAATACATTTTATTTCATTTGTTTAGATAAGTTTAAACTATTTTGTTCATTTATTTATC]
[+] EMBL BM623851 [CCGCCGTTTCGGGGTGGGTTGTTTTTTGTTTCAGATACTCATCGATTGCGTACGTTCCGCAGAAACCGTGGCTACAGAACGCCACCATCCGGGAGAACGTCCTGTTCGGCGAGAGCTTCCGGCCGAAACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACCTCGACCTGATGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCAGCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGTAAGTGCGTATGTGCGTTGTGGGCGGTGGAGGGGTTTTTCGTGTTTTGTTTTATTTATTCGGCGCTTTGATTTGATTGTGCTCGGGAGAAAGTTAATTGGTTTTAGATTTTTTTTTAATTTTAAATGTCTTTTTCAAATGTGTTTTGTTTGAACAATATAGTTGTATCGGTTATGATTTTTGAATCAATATTTTTCGTGGCTATGTATATTTTATACATTCTATTTCTCTACTATAATTCCAGACAATAGAGAAGTGTCTTCTGTTCAAAGTTTCCATTTTTTTAAACAACAAATAGTACTACTACATCAATACATTTTATTTCATTTGTTTAGATAAGTTTAAACTATTTTGTTCATTTATTTATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3437#0 CCGGCAAAAGTGACGCGTCGCTGGACATGGACGAAGCGGGTGACCCACAGGACGGGGACG 60
consensus_3437#1 ------------------------------------------------------------
consensus_3437#0 ATGCTGCAGCAGCGCAGGAACAGTGCCCGGGTGTTCCGGTCGTTGCACCACCCGATCAGG 120
consensus_3437#1 ------------------------------------------------------------
consensus_3437#0 TAGAAGAAGGGCAGCAGCTGCAGCAGCCAGGCATTAAATCGTCCGATAATGTTACCGGTT 180
consensus_3437#1 ------------------------------------------------------------
consensus_3437#0 CGCCGCAAACCGAGCGGAAAGCTGCTGACAATGCTGGCCCATTGCCGCTGGTGGAGGATG 240
consensus_3437#1 --CCGCCGTTTCGG-GGTGGGTTGTTTTTTGTTTCAGATACTCATCGATTGCGTACGTT- 56
**** * ** * ** * * * * ** * * * * * *
consensus_3437#0 TCGGTGGGAAAAGCTGCAGCCAGCACTCGTCCATGAGCTCGGACCGGTCGATTAGGTGCG 300
consensus_3437#1 -CCGCAGAAACCGTGGCTAC-AGAACGCCACCATCCGGG-AGAACGTCCTGTTCGGCGAG 113
* * * ** * ** * ** ** * **** * ** ** * ** ** * *
consensus_3437#0 AGCAGGTTGACCGGGCACCGATGGCCCGGCAGCGACCGGCCAAATACCAGAAGACGGTCC 360
consensus_3437#1 AGCTT-CCGGCCGAA-ACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACC 171
*** * *** ** * * **** ** * **** * **** *** **
consensus_3437#0 -CGAGCCCCCGCGTGAAGCTGAAGAAGCACAGCCAGCTGTCGGTGAGCGCACGGCTGGAG 419
consensus_3437#1 TCGACCTGATGCCTGCCGGCGATGGGACGGAA------ATTGGCGAACGTG-GCCTGAAA 224
*** * ** ** * ** * * * * ** ** ** * *** *
consensus_3437#0 AAGTGTCGCCAGAAGCAGAAGCATCTGGCGCGGGAAATGCGCTTCGGGCTGCCCGACCAT 479
consensus_3437#1 CTGTCCGGCGGTCAGCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAAC 284
** ** *** * *** * * ** * * * ** * * * * *
consensus_3437#0 GCGGCGGTGTTTCTTAAGGACGCACGCTTCCGGTGGAACGACACGGGGGCAGACGACACC 539
consensus_3437#1 GTCGTAATATTGGT-AAGTGCGTATGTGCGTTGTGGG-CGGTGGAGGGGTTTTTCGTGTT 342
* * * ** * *** ** * * **** ** ****
consensus_3437#0 ATGACACACTGTGCGCTACACATTGAGCAGCTGACCGTGCCGAAAGCCAAACTGACCGTC 599
consensus_3437#1 TTGTTTTATT-TATTCGGCGCTTTGAT---TTGATTGTGCTCGGGAGAAAGTTAATTGG- 397
** * * * * * * **** *** **** ** * * *
consensus_3437#0 ATTGTTGGGCGTAGCGGGAGCGGCAAATCGTCCCTGCTGGCTGCGCTGCTCAAAGAGATA 659
consensus_3437#1 --TTTTAGATTTTTTTTTAATTTTAAAT-GTCTTTTTCAAATGTGTT-TTGTTTGAACAA 453
* ** * * * **** *** * ** * * * ** *
consensus_3437#0 AATCATCTTTCCGGCGAACTGATCTGGAATAAATACTCATCG--ATTGCGTACGTTCCGC 717
consensus_3437#1 TATAGTTGTATCGGTTA-TGATTTTTGAATCAATATTTTTCGTGGCTATGTATATTTTAT 512
** * * *** * * * **** **** * *** * *** **
consensus_3437#0 AGAAACCGTGGCTACAGAACGCCACCATCCGGGAGA-ACGTCCTGTTCGGCGAGAGCTTC 776
consensus_3437#1 ACATTCTATTTCTCTACTATAATTCCAGACAATAGAGAAGTGTCTTCTGTTCAAAGTTTC 572
* * * * ** * * *** * *** * ** * * * ** ***
consensus_3437#0 CGGCCGAAACGGTACGACCGGGTGCTGCGG-GCCTGTGCACTGAAGCCGGACCTCGACCT 835
consensus_3437#1 CATTTTTTTAAACAACAAATAGTACTACTACATCAATACATTTTATTTCA--TTTGTTTA 630
* * * ** ** * * * ** * * * *
consensus_3437#0 GATGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCA 895
consensus_3437#1 GATAAGTTTAAACTATTTTGTTCAT-TTATTTATC------------------------- 664
*** * * ** * ** * *
consensus_3437#0 GCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGA 955
consensus_3437#1 ------------------------------------------------------------
consensus_3437#0 TGATCCATTGTCCGCCCTAGACAACGAGGTCGCCATGGACGTTTTCGAGAACGGTGTCCA 1015
consensus_3437#1 ------------------------------------------------------------
consensus_3437#0 CCGGATGCTGGCACGCCAAA 1035
consensus_3437#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||