cluster # 3450

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Anopheles gambiae
cluster # 3450 cluster # 3450 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3450#0 length = 679 sequences # 1

consensus_3450#1 length = 654 sequences # 1
consensus_3450#2 length = 587 sequences # 1

consensusID : consensus_3450#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 679
fasta sequence

                              [CCGCGAAACAGAACCGACACACAGAAAGCGGCAAGGAAAAAGTGCGTGCGTGCTTCAATATCGATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTTGAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTGCTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTACTATCGTAATCGACGCGAAGAAGCGGATAGCAAGCGAATAGCGAAATAGTAGTGAATAGAATCTTTAATAGCAAGCCTCGTTACAAGTTATCCTTTTTGCGGAAAATTTATTTGTGCCTAATTTTGCACAGACACGCCTCGTCTGCGCATCCCCTTTGCTGTGTATAATTTCCTCGTGTTTCAACTTTCCTAGCTTCATTCCCGCTACACCACACACCGTTCGATCGTTCGGCGTTTTGGGCTAGAGCACCCTTTCAGTTCAGATAAATAGATTTTTTTTGTCAATCAAGCACCACACACTCTGCTCCCCCTTCTATTCGGTAATAACGGTCACTCACTGCCGACCCACACCGCTCTAGCACTGGAAACTCTTTCCGATCAAATTCAGGAAAACTGCACATACATACCACACACACACACGCCTAGACATACGTAAACAAACGCACACATACATTAGGGC]

[+] EMBL BM584751             [CCGCGAAACAGAACCGACACACAGAAAGCGGCAAGGAAAAAGTGCGTGCGTGCTTCAATATCGATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTTGAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTGCTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTACTATCGTAATCGACGCGAAGAAGCGGATAGCAAGCGAATAGCGAAATAGTAGTGAATAGAATCTTTAATAGCAAGCCTCGTTACAAGTTATCCTTTTTGCGGAAAATTTATTTGTGCCTAATTTTGCACAGACACGCCTCGTCTGCGCATCCCCTTTGCTGTGTATAATTTCCTCGTGTTTCAACTTTCCTAGCTTCATTCCCGCTACACCACACACCGTTCGATCGTTCGGCGTTTTGGGCTAGAGCACCCTTTCAGTTCAGATAAATAGATTTTTTTTGTCAATCAAGCACCACACACTCTGCTCCCCCTTCTATTCGGTAATAACGGTCACTCACTGCCGACCCACACCGCTCTAGCACTGGAAACTCTTTCCGATCAAATTCAGGAAAACTGCACATACATACCACACACACACACGCCTAGACATACGTAAACAAACGCACACATACATTAGGGC]




>consensus_3450#0
CCGCGAAACAGAACCGACACACAGAAAGCGGCAAGGAAAAAGTGCGTGCGTGCTTCAATA
TCGATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTT
GAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTG
CTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTACTATCGTAATCGACGCGAAGA
AGCGGATAGCAAGCGAATAGCGAAATAGTAGTGAATAGAATCTTTAATAGCAAGCCTCGT
TACAAGTTATCCTTTTTGCGGAAAATTTATTTGTGCCTAATTTTGCACAGACACGCCTCG
TCTGCGCATCCCCTTTGCTGTGTATAATTTCCTCGTGTTTCAACTTTCCTAGCTTCATTC
CCGCTACACCACACACCGTTCGATCGTTCGGCGTTTTGGGCTAGAGCACCCTTTCAGTTC
AGATAAATAGATTTTTTTTGTCAATCAAGCACCACACACTCTGCTCCCCCTTCTATTCGG
TAATAACGGTCACTCACTGCCGACCCACACCGCTCTAGCACTGGAAACTCTTTCCGATCA
AATTCAGGAAAACTGCACATACATACCACACACACACACGCCTAGACATACGTAAACAAA
CGCACACATACATTAGGGC

consensusID : consensus_3450#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [CCGCGGACGCGTGGGCGGCAAGGAAAAAGTGCGTGCGTGCTTCAATATCGATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTTGAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTGCTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTACTATCGTAATCGACGCGAAGAAGCGGATAGCAAGCGAATAGCGAAATAGTAGTGAATAGAATCTTTAATAGCAAGCCTCGTTACAAGTTATCCTTTTTGCGGAAAATTTATTTGTGCCTAATTTTGCACAGACACGCCTCGTCTGCGCATCCCCTTTGCTGTGTATAATTTCCTCGTGTTTCAACTTTCCTAGCTTCATTCCCGCTACACCACACACCGTTCGATCGTTCGGCGTTTTGGGCTAGAGCACCCTTTCAGTTCAGATAAATAGATTTTTTTTGTCAATCAAGCACCACACACTCTGCTCCCCCTTCTATTCGGTAATAACGGTCACTCACTGCCGACCCACACCGCTCTAGCACTGGAAACTCTTTCCGATCAAATTCAGGAAAACTGCACATACATACCACACACACACACGCCTAGACATACGTAAACAAACGCACAC]

[+] EMBL BM615406             [CCGCGGACGCGTGGGCGGCAAGGAAAAAGTGCGTGCGTGCTTCAATATCGATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTTGAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTGCTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTACTATCGTAATCGACGCGAAGAAGCGGATAGCAAGCGAATAGCGAAATAGTAGTGAATAGAATCTTTAATAGCAAGCCTCGTTACAAGTTATCCTTTTTGCGGAAAATTTATTTGTGCCTAATTTTGCACAGACACGCCTCGTCTGCGCATCCCCTTTGCTGTGTATAATTTCCTCGTGTTTCAACTTTCCTAGCTTCATTCCCGCTACACCACACACCGTTCGATCGTTCGGCGTTTTGGGCTAGAGCACCCTTTCAGTTCAGATAAATAGATTTTTTTTGTCAATCAAGCACCACACACTCTGCTCCCCCTTCTATTCGGTAATAACGGTCACTCACTGCCGACCCACACCGCTCTAGCACTGGAAACTCTTTCCGATCAAATTCAGGAAAACTGCACATACATACCACACACACACACGCCTAGACATACGTAAACAAACGCACAC]




>consensus_3450#1
CCGCGGACGCGTGGGCGGCAAGGAAAAAGTGCGTGCGTGCTTCAATATCGATGGAAAGCG
ACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTTGAATCGCCCACCA
GCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTGCTTACAAGGCAGC
AAGGGCTATCATGAACCCCTACGGTACTATCGTAATCGACGCGAAGAAGCGGATAGCAAG
CGAATAGCGAAATAGTAGTGAATAGAATCTTTAATAGCAAGCCTCGTTACAAGTTATCCT
TTTTGCGGAAAATTTATTTGTGCCTAATTTTGCACAGACACGCCTCGTCTGCGCATCCCC
TTTGCTGTGTATAATTTCCTCGTGTTTCAACTTTCCTAGCTTCATTCCCGCTACACCACA
CACCGTTCGATCGTTCGGCGTTTTGGGCTAGAGCACCCTTTCAGTTCAGATAAATAGATT
TTTTTTGTCAATCAAGCACCACACACTCTGCTCCCCCTTCTATTCGGTAATAACGGTCAC
TCACTGCCGACCCACACCGCTCTAGCACTGGAAACTCTTTCCGATCAAATTCAGGAAAAC
TGCACATACATACCACACACACACACGCCTAGACATACGTAAACAAACGCACAC

consensusID : consensus_3450#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence

                              [TATCCATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTTGAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTGCTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTATACCTGTTGAATCGGAGGACGCGCAAAAGCTTCGGTTTCAGGTGGAGCTGGAGTTTGTGCAGTGTTTAGCAAATCCCAACTATCTGCACTTTTTAGCCCAGCGAGGATACTTCAAAGATGCTGCCTTCGTCAACTACCTTAAGTATCTGCTGTACTGGAAGGAGCCGGAGTACGCGAAATACCTCAAGTTTCCCATGTGTCTGTACTTTCTCGATCTGCTGCAGTACGAGCACTTTCGGCGCGAGATCGTCAGCGCACAGTGCTGCAAGTTTATCGACGACCAGGCGATCCTGCTGTGGCAGCACTACACCCGGCGGCGCACGCGGCTAACCGCGCTCGGGACCACCAGCCTGACGGGGCTGGCGGTGGGCGGCCAGCCGGTCGGGGGCGGTGTCCAAGGGACGCTACTATCGAACGATCCCGCCA]

[+] EMBL BX628886             [TATCCATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTTGAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTGCTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTATACCTGTTGAATCGGAGGACGCGCAAAAGCTTCGGTTTCAGGTGGAGCTGGAGTTTGTGCAGTGTTTAGCAAATCCCAACTATCTGCACTTTTTAGCCCAGCGAGGATACTTCAAAGATGCTGCCTTCGTCAACTACCTTAAGTATCTGCTGTACTGGAAGGAGCCGGAGTACGCGAAATACCTCAAGTTTCCCATGTGTCTGTACTTTCTCGATCTGCTGCAGTACGAGCACTTTCGGCGCGAGATCGTCAGCGCACAGTGCTGCAAGTTTATCGACGACCAGGCGATCCTGCTGTGGCAGCACTACACCCGGCGGCGCACGCGGCTAACCGCGCTCGGGACCACCAGCCTGACGGGGCTGGCGGTGGGCGGCCAGCCGGTCGGGGGCGGTGTCCAAGGGACGCTACTATCGAACGATCCCGCCA]




>consensus_3450#2
TATCCATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCG
TTGAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAG
TGCTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTATACCTGTTGAATCGGAGGA
CGCGCAAAAGCTTCGGTTTCAGGTGGAGCTGGAGTTTGTGCAGTGTTTAGCAAATCCCAA
CTATCTGCACTTTTTAGCCCAGCGAGGATACTTCAAAGATGCTGCCTTCGTCAACTACCT
TAAGTATCTGCTGTACTGGAAGGAGCCGGAGTACGCGAAATACCTCAAGTTTCCCATGTG
TCTGTACTTTCTCGATCTGCTGCAGTACGAGCACTTTCGGCGCGAGATCGTCAGCGCACA
GTGCTGCAAGTTTATCGACGACCAGGCGATCCTGCTGTGGCAGCACTACACCCGGCGGCG
CACGCGGCTAACCGCGCTCGGGACCACCAGCCTGACGGGGCTGGCGGTGGGCGGCCAGCC
GGTCGGGGGCGGTGTCCAAGGGACGCTACTATCGAACGATCCCGCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3450#0      CCGCGAAACAGAACCGACACACAGAAAGCGGCAAGGAAAAAGTGCGTGCGTGCTTCAATA 60
consensus_3450#1      ----------CCGCGGACGCGTGG---GCGGCAAGGAAAAAGTGCGTGCGTGCTTCAATA 47
consensus_3450#2      ----------------------------------------------------------TA 2
                                                                                **

consensus_3450#0      TCGATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTT 120
consensus_3450#1      TCGATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTT 107
consensus_3450#2      TCCATGGAAAGCGACCGTTCGTCTGCGTATTAGCGTACAAATCCTGGTGCCCCCGGCGTT 62
                      ** *********************************************************

consensus_3450#0      GAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTG 180
consensus_3450#1      GAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTG 167
consensus_3450#2      GAATCGCCCACCAGCCTGGAGACCAGACCGGATCGTTCCACCCATCATACGGCAGCAGTG 122
                      ************************************************************

consensus_3450#0      CTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTACTATCGTAATCGACGCGAAGA 240
consensus_3450#1      CTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTACTATCGTAATCGACGCGAAGA 227
consensus_3450#2      CTTACAAGGCAGCAAGGGCTATCATGAACCCCTACGGTATACCTGT--TGAATCGGAGGA 180
                      ***************************************     **  *  *   ** **

consensus_3450#0      AGCGGATAGCAAGCGAAT---AGCGAAATAGTAGTGAATAGAATCTTTAATAGCAAGCCT 297
consensus_3450#1      AGCGGATAGCAAGCGAAT---AGCGAAATAGTAGTGAATAGAATCTTTAATAGCAAGCCT 284
consensus_3450#2      CGCGCAAAAGCTTCGGTTTCAGGTGGAGCTGGAGTTTGTGCAGTGTTTAGCA--AATCCC 238
                       *** * *     **  *    * * *   * ***   *  * * ****  *  ** ** 

consensus_3450#0      CGTTACAAGTTATCCTTTTTGCGGAAAATTTATTTGTGCCTAATTTTGCACAGACACGCC 357
consensus_3450#1      CGTTACAAGTTATCCTTTTTGCGGAAAATTTATTTGTGCCTAATTTTGCACAGACACGCC 344
consensus_3450#2      AACTATCTGCACTTTTTAGCCCAGCGAGGATACTTCAAA--GATGCTGCCTTCGT-CAAC 295
                         **   *   *  **    * *  *   ** **       **  ***       *  *

consensus_3450#0      TCGTCTGCGCATCCCCTTTGCTGTGTATAATTTCCTCGTGTTTCAACTTTCCTAGCTTCA 417
consensus_3450#1      TCGTCTGCGCATCCCCTTTGCTGTGTATAATTTCCTCGTGTTTCAACTTTCCTAGCTTCA 404
consensus_3450#2      TACCTTAAGTATCTGCTGTACTGGAAGGAGCCGGAGTACGCGA-AATACCTCAAGTTTCC 354
                      *    *  * ***  ** * ***     *          *    **     * ** *** 

consensus_3450#0      TTCCCG-CTACACCA-CACACCGTTCGATCGTTCG-GCGTTTTGGGCTAGAGCACCCTTT 474
consensus_3450#1      TTCCCG-CTACACCA-CACACCGTTCGATCGTTCG-GCGTTTTGGGCTAGAGCACCCTTT 461
consensus_3450#2      CATGTGTCTGTACTTTCTCGATCTGCTGCAGTACGAGCACTTTCGGCGCGAGA---TCGT 411
                           * **  **   * *    * *    ** ** **  *** ***  ***       *

consensus_3450#0      CAGTTCAGATAAATAGATTTTTTTTGTCAATCAAGCACCACACACTCTGCTCCCCCTTCT 534
consensus_3450#1      CAGTTCAGATAAATAGATTTTTTTTGTCAATCAAGCACCACACACTCTGCTCCCCCTTCT 521
consensus_3450#2      CAGCGCACAGTGCTGCAAGTTTATCGACGACCAGGCGAT-CCTGCTGTGGCAGCACTAC- 469
                      ***  ** *    *  *  *** * * * * ** **    *   ** **    * ** * 

consensus_3450#0      ATTCGGTAATA---ACGGTCACTCACTGCCGACCCACACCGCTCTAGCACTGGAAACTCT 591
consensus_3450#1      ATTCGGTAATA---ACGGTCACTCACTGCCGACCCACACCGCTCTAGCACTGGAAACTCT 578
consensus_3450#2      ACCCGGCGGCGCACGCGGCTAACCGCGCTCGGGAC-CACCAGCCTGACGGGGCTGGCGGT 528
                      *  ***         ***  *  * *   **   * ****   **  *   *    *  *

consensus_3450#0      TTCCGATCAAAT--TCAGGAAAACTGCACATACATACCACACACACACACG-CCTAGACA 648
consensus_3450#1      TTCCGATCAAAT--TCAGGAAAACTGCACATACATACCACACACACACACG-CCTAGACA 635
consensus_3450#2      GGGCGGCCAGCCGGTCGGGGGCGGTGTCCA-AGGGACGCTACTATCGAACGATCCCGCCA 587
                         **  **     ** **     **  ** *   **   **   *  ***  *  * **

consensus_3450#0      TACGTAAACAAACGCACACATACATTAGGGC 679
consensus_3450#1      TACGTAAACAAACGCACAC------------ 654
consensus_3450#2      -------------------------------