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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3452#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 877 fasta sequence
[AAAAAAACCAGACGCAGGGAGAGGCGGTTGGAAGGTGATGTGTTCGGTCCCCGTCCCCAAACGTGATGATAGCGCCATTTTCCCCCTCCTCCCAATTTGGGGCGATGCTTCAATCAAACTATTGTTTACGAACGTTAACGTTTAAGGTGTAATTTGTGCGGCGTAAGTCGTTCAAGCGTCAAGCGAGATGCCATCGAAGGGGAAGGAGGCCAGCGCCGGTAGGAAGAGAAAAAAGATAATAGAAAAACGGATTTCAGTACGGTTTTCCCCCCTCTTTGGATGACTTTCCCAATAGCGATGGAACACAAGCCGTGTAGTAGCGTAATGATGTGCGAGAAGCCGGGGTGGTTGAGTTGCTACGTTTATCTAGTGCTTTACATACTTCCTTGTTTAAGTTTGACAGTTTGTTTGACTATTACTACTACTACTAATTGTAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAAGCAAAAGAGAGAGAGAGAGAGAGAGAAAAACAAACACACCTAACATAAGCAATCAAATGAGTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGGAGGGATGGCAGACAGGTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAACGTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGGCAACAAATGCATTCATCCTTCCCCGTTAGCCCGCCTTGTTCGGTCGGACCGTAGGCTTTCCTTGGTCCGAAACCTTTAAAGGCCCCCTGGTTATAGGATTTGGCGGTTAACNTAGTTAAGGCAAAACCTGGTANAGTACACTTGACTNAACCTANAGTAAA]
[+] EMBL AGA282945 [AAAAAAACCAGACGCAGGGAGAGGCGGTTGGAAGGTGATGTGTTCGGTCCCCGTCCCCAAACGTGATGATAGCGCCATTTTCCCCCTCCTCCCAATTTGGGGCGATGCTTCAATCAAACTATTGTTTACGAACGTTAACGTTTAAGGTGTAATTTGTGCGGCGTAAGTCGTTCAAGCGTCAAGCGAGATGCCATCGAAGGGGAAGGAGGCCAGCGCCGGTAGGAAGAGAAAAAAGATAATAGAAAAACGGATTTCAGTACGGTTTTCCCCCCTCTTTGGATGACTTTCCCAATAGCGATGGAACACAAGCCGTGTAGTAGCGTAATGATGT ]
[+] EMBL BX467593 [ ggccaagAATCGGCACGAG GATGCCATCGAAGGGGAAGGAGGCCAGCGCCGGTAGGAAGAGAAAAAAGATAATAGAAAAACGGATTTCAGTACGGTTTTCCCCCCTCTTTGGATGACTTTCCCAATAGCGATGGAACACAAGCCGTGTAGTAGCGTAATGATGTGCGAGAAGCCGGGGTGGTTGAGTTGCTACGTTTATCTAGTGCTTTACATACTTCCTTGTTTAAGTTTGACAGTTTGTTTGACTATTACTACTACTACTAATTGTAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAAGCAAAAGAGAGAGAGAGAGAGAGAGAAAAACAAACACACCTAACATAAGCAATCAAATGAGTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGGAGGGATGGCAGACAGGTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAACGTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGGCAACAAATGCATTCATCCTTCCCCGTTAGCCCGCCTTGTTCGGTCGGACCGTAGGCTTTCCTTGGTCCGAAACCTTTAAAGGCCCCCTGGTTATAGGATTTGGCGGTTAACNTAGTTAAGGCAAAACCTGGTANAGTACACTTGACTNAACCTANAGTAAA]
consensusID : consensus_3452#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence
[TATTGGAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAAGCAAAAGAGAGAGAGAGAGAGAGGGGAAAACAAACACACCTAACATAAGCAATCAAATGAGTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGAGGATGGCAGACAGGTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAACGTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGCAACAATGCATCATCCTCCCGTAGCCGCCTTGTCGTCGACGTAGCTTCCTGTCGAACTTAAGCCCTGTTTGTTTGCGTTACTATTAGCAACTGTTTTTTCTTAATAACTAAACTAAAGAAAAGAAAGAGTAAACTCCCCCATCTCCCTTTTTGATATAAAATCTATCCCGGTTGATCATGTACACTGTTGATTGCCTAGTTTTCTATAGTGATTAGTTAGCTACAAATAGAACACTGAGCCAGAAGCGAAACACACATATAGCCACGCGGTGTGCGTGCGTGCGACTAGTGTGTGAGCTAGGCTAGCCGGACTACTAGACGGTGGATTTGTTTGTTGAATAAGTTTAGCAATAGTAGCAAGTAGCACAGCAGTTTATTGTAATACGAAAATATGGCGCTAAATGATATTTAATAGCAAATGATTGATTTCAGAATAAAAAAAAAAAAAAAA]
[-] EMBL AGA281335 [TATTGGAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAAGCAAAAGAGAGAGAGAGAGAGAGGGGAAAACAAACACACCTAACATAAGCAATCAAATGAGTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGAGGATGGCAGACAGGTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAACGTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGCAACAATGCATCATCCTCCCGTAGCCGCCTTGTCGTCGACGTAGCTTCCTGTCGAACTTAAGCCCTGTTTGTTTGCGTTACTATTAGCAACTGTTTTTTCTTAATAACTAAACTAAAGAAAAGAAAGAGTAAACTCCCCCATCTCCCTTTTTGATATAAAATCTATCCCGGTTGATCATGTACACTGTTGATTGCCTAGTTTTCTATAGTGATTAGTTAGCTACAAATAGAACACTGAGCCAGAAGCGAAACACACATATAGCCACGCGGTGTGCGTGCGTGCGACTAGTGTGTGAGCTAGGCTAGCCGGACTACTAGACGGTGGATTTGTTTGTTGAATAAGTTTAGCAATAGTAGCAAGTAGCACAGCAGTTTATTGTAATACGAAAATATGGCGCTAAATGATATTTAATAGCAAATGATTGATTTCAGAATAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3452#0 AAAAAAACCAGACGCAGGGAGAGGCGGTTGGAAGGTGATGTGTTCGGTCCCCGTCCCCAA 60
consensus_3452#1 ------------------------------------------------------------
consensus_3452#0 ACGTGATGATAGCGCCATTTTCCCCCTCCTCCCAATTTGGGGCGATGCTTCAATCAAACT 120
consensus_3452#1 ------------------------------------------------------------
consensus_3452#0 ATTGTTTACGAACGTTAACGTTTAAGGTGTAATTTGTGCGGCGTAAGTCGTTCAAGCGTC 180
consensus_3452#1 ------------------------------------------------------------
consensus_3452#0 AAGCGAGATGCCATCGAAGGGGAAGGAGGCCAGCGCCGGTAGGAAGAGAAAAAAGATAAT 240
consensus_3452#1 ------------------------------------------------------------
consensus_3452#0 AGAAAAACGGATTTCAGTACGGTTTTCCCCCCTCTTTGGATGACTTTCCCAATAGCGATG 300
consensus_3452#1 ------------------------------------------------------------
consensus_3452#0 GAACACAAGCCGTGTAGTAGCGTAATGATGTGCGAGAAGCCGGGGTGGTTGAGTTGCTAC 360
consensus_3452#1 ------------------------------------------------------------
consensus_3452#0 GTTTATCTAGTGCTTTACATACTTCCTTGTTTAAGTTTGACAGTTTGTTTGACTATTACT 420
consensus_3452#1 ------------------------------------------------------------
consensus_3452#0 ACTACTACTAATTGTAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAA 480
consensus_3452#1 ---------TATTGGAATATCACGTATTTTCACGTACGCCAATCATATGTAGTTGGGTAA 51
**** *********************************************
consensus_3452#0 GCAAAAGAGAGAGAGAGAGAGAGAGAAAAACAAACACACCTAACATAAGCAATCAAATGA 540
consensus_3452#1 GCAAAAGAGAGAGAGAGAGAGAGGGGAAAACAAACACACCTAACATAAGCAATCAAATGA 111
*********************** * **********************************
consensus_3452#0 GTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGGGAGGGATGGCAGACAG 600
consensus_3452#1 GTAAGGATGTTAACGTGTAACGCGCTGCACGGACCAAGGAAGGG--AGGATGGCAGACAG 169
******************************************** *************
consensus_3452#0 GTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAAC 660
consensus_3452#1 GTTTAGGAGAAGGAACCTGGTGTCCTGGTGCGGCATTCAGTAATGCAATGCAGAAGCAAC 229
************************************************************
consensus_3452#0 GTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAGGCAAC 720
consensus_3452#1 GTAATCATCTACTTATATAGTCCCCTTTATATTAGCAATGGCAGGCATATAGTAG-CAAC 288
******************************************************* ****
consensus_3452#0 AAATGCATTCATCCTTCCCCGTTAGCCCGCCTTGTTCGGTCGGACCGTAGGCTTTCCTTG 780
consensus_3452#1 AA-TGCAT-CATCCTCCCGTAGCCGCCT-TGTCGTCGACGTAGCTTCCTGTCGAACTTAA 345
** ***** ****** ** *** * ** * * * * *
consensus_3452#0 GTCCGAAACCTTTAAAGGCCCCCTGGTTATAGGATTTGGCGGTTAACNTAGTTAAGGCAA 840
consensus_3452#1 GCCCTGTTTGTTTGCGTTACTATTAGCAACTGTTTTTTCTTAATAACTAAACTAAAGAAA 405
* ** *** * * * * * *** **** * *** * **
consensus_3452#0 AACCTGGTANAGTACACTTGACTNAACCTANAGTAAA----------------------- 877
consensus_3452#1 AGAAAGAGTAAACTCCCCCATCTCCCTTTTTGATATAAAATCTATCCCGGTTGATCATGT 465
* * * * * ** * ** *
consensus_3452#0 ------------------------------------------------------------
consensus_3452#1 ACACTGTTGATTGCCTAGTTTTCTATAGTGATTAGTTAGCTACAAATAGAACACTGAGCC 525
consensus_3452#0 ------------------------------------------------------------
consensus_3452#1 AGAAGCGAAACACACATATAGCCACGCGGTGTGCGTGCGTGCGACTAGTGTGTGAGCTAG 585
consensus_3452#0 ------------------------------------------------------------
consensus_3452#1 GCTAGCCGGACTACTAGACGGTGGATTTGTTTGTTGAATAAGTTTAGCAATAGTAGCAAG 645
consensus_3452#0 ------------------------------------------------------------
consensus_3452#1 TAGCACAGCAGTTTATTGTAATACGAAAATATGGCGCTAAATGATATTTAATAGCAAATG 705
consensus_3452#0 ------------------------------
consensus_3452#1 ATTGATTTCAGAATAAAAAAAAAAAAAAAA 735
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||