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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3460#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence
[CCGGGAACAATAATTCCGGAATTTATTTCGTTTTCTTGCATCGGAAGTGATCAATCACGGTCGTGTGCGTACGTGTGTGCGTGTGTGTGCTGAGTCAGCAGCGTTTGTTTCGGACCAAACGGCACCAGCCCAGCTTTAAGCCCAGTCGTCCCTGGTTCGTTTCCGTCAGTTCTGGTCGGTGTGCTGCTGCAAACCTTCCCCGTTTCCCGTTTCTCATCCGGCTGTTCGGGTCGCTCACTCGCTGGTCTGCTGGTTTGCAGACGAAGCAAAGTGACCGCCGCACAATCTCGCTTCCCCTTCTCCTCTACCTCCGCGCTGCTTCAACGTCGTCGGGTGGGGAGCGAAAATCGACCAGCCTTTGTGGGCTAGAGAGTTTTGCCTTCCCTGCTTTTTGGCTGCCCCGTAGGCTGTGCTGTGCCTCGGCTAACACAATCGGAAAAGTGTACGCTTGGCACCGTCGTCGAAGCAGGAAGCATCGCAAGAACACAGAGAGACTTTAATATATGTAAGTGCCGTCGCCGTTCGAGATGCAACACTTCAATCTATCTGATTGAATGTGCTGTGCGTTTATAGAGTGTAGTACACCAGAAGTGCATCGTGCAACGGAGGTGATGCAAAAGCAACAAACCGTCCCGGCAGAGAGAGAGTGAAACGCAACAGTTAATCCGTATGGGAAACTAACAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGC]
[+] EMBL BM616618 [CCGGGAACAATAATTCCGGAATTTATTTCGTTTTCTTGCATCGGAAGTGATCAATCACGGTCGTGTGCGTACGTGTGTGCGTGTGTGTGCTGAGTCAGCAGCGTTTGTTTCGGACCAAACGGCACCAGCCCAGCTTTAAGCCCAGTCGTCCCTGGTTCGTTTCCGTCAGTTCTGGTCGGTGTGCTGCTGCAAACCTTCCCCGTTTCCCGTTTCTCATCCGGCTGTTCGGGTCGCTCACTCGCTGGTCTGCTGGTTTGCAGACGAAGCAAAGTGACCGCCGCACAATCTCGCTTCCCCTTCTCCTCTACCTCCGCGCTGCTTCAACGTCGTCGGGTGGGGAGCGAAAATCGACCAGCCTTTGTGGGCTAGAGAGTTTTGCCTTCCCTGCTTTTTGGCTGCCCCGTAGGCTGTGCTGTGCCTCGGCTAACACAATCGGAAAAGTGTACGCTTGGCACCGTCGTCGAAGCAGGAAGCATCGCAAGAACACAGAGAGACTTTAATATATGTAAGTGCCGTCGCCGTTCGAGATGCAACACTTCAATCTATCTGATTGAATGTGCTGTGCGTTTATAGAGTGTAGTACACCAGAAGTGCATCGTGCAACGGAGGTGATGCAAAAGCAACAAACCGTCCCGGCAGAGAGAGAGTGAAACGCAACAGTTAATCCGTATGGGAAACTAACAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGC]
consensusID : consensus_3460#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence
[CTCAGGCCACGAATTCGCACGAGGACCATTCTGATGTTGGAGCGGCCGCAACATGCCTGTTTTTTTATTTTTATCTAGTTGTTCGTTTTCTTGCATCGGAAGTGATCAATCACGGGTCGTGTGCGTACGTGTGTAGCGTGTGTGTGCTGAGTCAGCAGCGTTTGTTTCGGACCAAACGGGACCAGCCCAGCTTTAAGCCCAGGTCGTCGTGCCCGGCAGAGAGAGTGAAACGCAAGCAGTTAATCCGTATGGGAAACTAAGCAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGCAGTGCTGTGTGGTGTATGAAAACGAAGTGGTGAAACAGTGACGCTGCGAAGTGAATAGAAGAAAAAACGGATAATAATTGTGCGTGCGTGTCGTGTGTGTGAGAGAGTGTGTGGAAAGCCCAAGCAGACGTACGGAGGTCGGTGGCACGGTGGCCTCTAATATAGACACAACGGTTTCGAAATGAATACCCATCTGCGAAGGATCATCGCCCAGATCTCCCGCACCGTCACCCGATCCTGACGTTGACGAGGGTAGCTCGAACAAAGCAGGCACACAAAGAGTATTTACANACACNACGTTCTTCGACATGGCAAAATCACCGTATACTTGGGGAANAACGGTGACTTCGTCAGAACCACTCTCANGCACCATGTCGGACTCCCGCATCAATCGGTGTACATNCTAGCATA]
[+] EMBL BX469175 [CTCAGGCCACGAATTCGCACGAGGACCATTCTGATGTTGGAGCGGCCGCAACATGCCTGTTTTTTTATTTTTATCTAGTTGTTCGTTTTCTTGCATCGGAAGTGATCAATCACGGGTCGTGTGCGTACGTGTGTAGCGTGTGTGTGCTGAGTCAGCAGCGTTTGTTTCGGACCAAACGGGACCAGCCCAGCTTTAAGCCCAGGTCGTCGTGCCCGGCAGAGAGAGTGAAACGCAAGCAGTTAATCCGTATGGGAAACTAAGCAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGCAGTGCTGTGTGGTGTATGAAAACGAAGTGGTGAAACAGTGACGCTGCGAAGTGAATAGAAGAAAAAACGGATAATAATTGTGCGTGCGTGTCGTGTGTGTGAGAGAGTGTGTGGAAAGCCCAAGCAGACGTACGGAGGTCGGTGGCACGGTGGCCTCTAATATAGACACAACGGTTTCGAAATGAATACCCATCTGCGAAGGATCATCGCCCAGATCTCCCGCACCGTCACCCGATCCTGACGTTGACGAGGGTAGCTCGAACAAAGCAGGCACACAAAGAGTATTTACANACACNACGTTCTTCGACATGGCAAAATCACCGTATACTTGGGGAANAACGGTGACTTCGTCAGAACCACTCTCANGCACCATGTCGGACTCCCGCATCAATCGGTGTACATNCTAGCATA]
consensusID : consensus_3460#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[GCCGGAATTGGAGGAACAATAATTCCGGAATTTATTTCGTTTTCTTGCATCGGAAGTGATCAATCACGGTCGTCCCGGCAGAGAGAGTGAAACGCAACAGTTAATCCGTATGGGAAACTAACAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGCAGTGCTGTGTGGTGTATGAAAACGAAGTGGTGAAACAGTGACGCTGCGAAGTGAATAGAAGAAAAAAGGATAATAATTGTGCGTGCGTGTGTGTGTGTGAGAGAGTGTGTGGAAAGCCCAAGCAGACGTACGGAGGTCGGTGGCACGGTGGCCTCTAATTAGACACAACGGTTTCGAAATGAATACCCATCTGCAAGGATCATCGCCCAGATCTCCCGCACCGTCACCCGATCCTGACGTTGACGAGGGTAGCTCGAAAAAGCAGGCAACAAGAGTATTTAAGAAAAGTTCTTCGAATGGCAAAATCACCGTATACTTGGGAAAACGTGACTTCGTCGACCACATCACGCATGTCGATCCGATAGATGGTGTCGTGCTGATAGATCCCGACTATGTGAAGGAGCGGAAAGTTTTCGGACACGTACTGGCCGCCTTCCGGTACGGGCGTGAAGATCTGGACGTGCTGGGACTAACCTTCCGAAANGACCTGTATCTGGCATCCGAACAG]
[+] EMBL BX624548 [GCCGGAATTGGAGGAACAATAATTCCGGAATTTATTTCGTTTTCTTGCATCGGAAGTGATCAATCACGGTCGTCCCGGCAGAGAGAGTGAAACGCAACAGTTAATCCGTATGGGAAACTAACAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGCAGTGCTGTGTGGTGTATGAAAACGAAGTGGTGAAACAGTGACGCTGCGAAGTGAATAGAAGAAAAAAGGATAATAATTGTGCGTGCGTGTGTGTGTGTGAGAGAGTGTGTGGAAAGCCCAAGCAGACGTACGGAGGTCGGTGGCACGGTGGCCTCTAATTAGACACAACGGTTTCGAAATGAATACCCATCTGCAAGGATCATCGCCCAGATCTCCCGCACCGTCACCCGATCCTGACGTTGACGAGGGTAGCTCGAAAAAGCAGGCAACAAGAGTATTTAAGAAAAGTTCTTCGAATGGCAAAATCACCGTATACTTGGGAAAACGTGACTTCGTCGACCACATCACGCATGTCGATCCGATAGATGGTGTCGTGCTGATAGATCCCGACTATGTGAAGGAGCGGAAAGTTTTCGGACACGTACTGGCCGCCTTCCGGTACGGGCGTGAAGATCTGGACGTGCTGGGACTAACCTTCCGAAANGACCTGTATCTGGCATCCGAACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3460#1 CTCAGGCCACGAATTCGCACGAGGACCATTCTGATGTTGGAGCGGCCGCAACATGCCTGT 60
consensus_3460#2 ------------------------------------------------------------
consensus_3460#0 -------------------------------------------------------CCGGG 5
consensus_3460#1 TTTTTTATTTTTATCTAGTTGTTCGTTTTCTTGCATCGGAAGTGATCAATCACGGGTCGT 120
consensus_3460#2 ------------------------------------------------------------
consensus_3460#0 AACAATAATTCCGGAATTTATTTCGTTTTCTTGCATCGGAAGTGATCAATCACGG-TCGT 64
consensus_3460#1 GTGCGTACGTGTGTAGCGTGTGTGTGCTGAGTCAGCAGCGTTTGTTTCGGACCAAACGGG 180
consensus_3460#2 --------GCCGGAATTGGAGGAACAATAATTC--CGGAATTTATTTCGTTTTC--TTGC 48
consensus_3460#0 GTGCGTACGTGTGT-GCGTGTGTGTGCTGAGTCAGCAGCGTTTGTTTCGGACCAAACGGC 123
* * * * * * ** * * *** ***** *
consensus_3460#1 ACCAGCCCAGCTTTAAGCCCAGGTCGTCGTGCCCGGCAGAGAGAGTGAAACGCAAGCAGT 240
consensus_3460#2 ATCGGA--AGTGATCAATCACGGTCGTC----CCGGCAGAGAGAGTGAAACGCAA-CAGT 101
consensus_3460#0 ACCAGCCCAGCTTTAAGCCCAG-TCGTC--CCTGGTTCGTTTCCGTCAGTTCTGGTCGGT 180
* * * ** * * * * ***** * * ** * * **
consensus_3460#1 TAATCCGTATGGGAAACTAAGCAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGCA 300
consensus_3460#2 TAATCCGTATGGGAAACTAA-CAAGATTTGGCTTTTAGTTGCCTTGACAGGCGCGCTGCA 160
consensus_3460#0 --GTGCTGCTGCAAACCTTCCCCGTTTCCCGTTTCTCATCCGGCTGTTCGGGTCGCTCAC 238
* * ** ** ** * * * ** * * ** ** ****
consensus_3460#1 GTGCTG-TGTGGTG-TATGAAAACGAAGTGGTGAAACAGTGACGCTGCGAAGTGAATAGA 358
consensus_3460#2 GTGCTG-TGTGGTG-TATGAAAACGAAGTGGTGAAACAGTGACGCTGCGAAGTGAATAGA 218
consensus_3460#0 TCGCTGGTCTGCTGGTTTGCAGACGAAGCAAAGTGAC-----CGCCGCACAAT--CTCGC 291
**** * ** ** * ** * ****** * ** *** ** * * * *
consensus_3460#1 AGAAAAAACGGATAATAATTGTGCGTGCGTGTCGTGTGTGTGAGAGAGTGTGTGGAAAGC 418
consensus_3460#2 AGAAAAAA-GGATAATAATTGTGCGTGCGTGT-GTGTGTGTGAGAGAGTGTGTGGAAAGC 276
consensus_3460#0 TTCCCCTTCTCCTC-TACCTCCGCGCTGCTTCAACGT-CGTCGGGTGGGGAGCGAAAA-- 347
* ** * *** * ** ** * * * * * ***
consensus_3460#1 CCAAGCAGACGTACGGAGGTCGGTGGCACGGTGGCCTCTAATATAGACACAACGGTTTCG 478
consensus_3460#2 CCAAGCAGACGTACGGAGGTCGGTGGCACGGTGGCCTCTAAT-TAGACACAACGGTTTCG 335
consensus_3460#0 TCGACCAGCCTTTGTGGGCTAGAGAGTTTTGCCTTCCCTGCT----TTTTGGCTGCCCCG 403
* * *** * * * * * * * * * ** * * * **
consensus_3460#1 AAATGAATACCCATCTGCGAAGGATCATCGCCCAGATCTCCCGCACCGTCACCCGATCCT 538
consensus_3460#2 AAATGAATACCCATCTGC-AAGGATCATCGCCCAGATCTCCCGCACCGTCACCCGATCCT 394
consensus_3460#0 TAGGCTGTGCTGTGCCTC----GGCTAACAC---AATCGGAAAAGTGTACGCTTGGCACC 456
* * * * * * * * * *** * * * *
consensus_3460#1 GACGTTGACGAGGGTAGC-TCG-AACAAAGCAGGCACACAAAGAGTATTTACANACACNA 596
consensus_3460#2 GACGTTGACGAGGGTAGC-TCG-AA-AAAGCAGGCA-ACAA-GAGTATTTAAGAAAA--- 446
consensus_3460#0 GTCGTCGAAGCAGGAAGCATCGCAAGAACACAGAGAGACTT-TAATATATGTAAGTGCCG 515
* *** ** * ** *** *** ** ** *** * ** * *** *
consensus_3460#1 -CGTTCTTCGACATGGCAAAATCACCGTATACTTGGGGAANAACGGTGACTTCGTCAGAA 655
consensus_3460#2 --GTTCTTCGA-ATGGCAAAATCACCGTATACTTGGGAAAACGTGACTTCGTCGACCACA 503
consensus_3460#0 TCGCCGTTCGAGATG-CAACACTTCAATCTATCTGATTGAATGTGCTG--TGCGTTTATA 572
* ***** *** *** * * * ** ** * * ** *
consensus_3460#1 CCACTCTCANGCACCATGTCGG-ACTCCCGCATCAATCGGTGTACATNCTAGCATA---- 710
consensus_3460#2 TCACGCATGTCGATCCGATAGATGGTGTCGTGCTGATAGATCCCGACTATGTGAAGGAGC 563
consensus_3460#0 GAGTGTA-GTACACCAGAAGTGCA-TCGTGCAACGG-AGGTGATGCAAAAGCAACAAACC 629
* * * * * * *
consensus_3460#1 ------------------------------------------------------------
consensus_3460#2 GGAAAGTTTTCGGACACGTACTGGCCGCCTTCCGGTACGGGCGTGAAGATCTGGACGTGC 623
consensus_3460#0 GTCCCGGCAGAGAGAGAGTGAAACGCAACAGTTAATCCGTATGGGAAACTAACAAGATTT 689
consensus_3460#1 --------------------------------------------
consensus_3460#2 TGGGACTAACCTTCCGAAANGACCTGTATCTGGCATCCGAACAG 667
consensus_3460#0 GGCTTTTAGTTGCCTTGACAGGCGCGCTGC-------------- 719
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||