cluster # 3467

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Anopheles gambiae
cluster # 3467 cluster # 3467 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3467#0 length = 860 sequences # 2

consensus_3467#1 length = 311 sequences # 1

consensusID : consensus_3467#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 860
fasta sequence

                              [CCATCCATTCCTCCTCGGAACCCAACACTCTTTTAATAATGAGATGATAATCAATTCGCATTTTTCCGACAGTGGTTTTAAGAAATTATTAAAAATACACCTTATCTGTGACGTGGTTTCTTTCAGCTGCGACCGGTTCTCCACCGGTGGGAAATCGCATTTATAGAGCGCTCAGCCACTCGGTTCTGATAATTTCGACTATCGACTATCGCCAAACTGGGCGATGTTTAACGCACGAAATGGAATACGAATTTCCTTACATTCCATAACCTGTTTACAGTGTACAGTAGAGGCTTTATTGTGTGTATTTCAACAAGTCGTACGCAT--CATCTCCCGTTTTTTCCCCCCACGTATCGCTTTTTAAGTGGTTGGGTTTTCCAGCTTATAACCGTTTTTTTCTGTTTCTATCTCGTACGCGGAGTTTTAAGGATAGATGCTACGGTTTTACAAAAAAATGTACAAACAACGCAACGACATTTCTTTACTCTCTCGTTTTTAAGCATCCCTAAAATGGCAAACCGGCTTGATGAAACGTGATCGCAGAACATTCTTCGCTTGGTTCGGAGATACTGCAGAAGGTGGGAAGGAGGGAAGGAAGAATATGGAATAAAGAGTGGCGCCTAATTCAAAGTGTTCTCTTCTGTCTCAAGGTATCAAGGTGAGAGAGGATCGGTTTTCCCCAGTGCTACGCTTTCACTATCTATTGAGGGGGGAVAGTCTAATGTAAAAATCGTTTCTGAGATTGAAGCAGTACAGGATCAATTAACGCTTTTTTGTTTTGTTCCTTTCTTTACCTAGCTGGAGCCTAGTGGTACATTTCTAATTGTTTGCTAAATGTTGTAACGTTTGCTAATGGGKCT]

[-] EMBL BM583194             [CCATCCATTCCTCCTCGGAACCCAACACTCTTTTAATAATGAGATGATAATCAATTCGCATTTTTCCGACAGTGGTTTTAAGAAATTATTAAAAATACACCTTATCTGTGACGTGGTTTCTTTCAGCTGCGACCGGTTCTCCACCGGTGGGAAATCGCATTTATAGAGCGCTCAGCCACTCGGTTCTGATAATTTCGACTATCGACTATCGCCAAACTGGGCGATGTTTAACGCACGAAATGGAATACGAATTTCCTTACATTCCATAACCTGTTTACAGTGTACAGTAGAGGCTTTATTGTGTGTATTTCAACAAGTCGTACGCAT  CATCTCCCGTTTTTTCCCCCCACGTATCGCTTTTTAAGTGGTTGGGTTTTCCAGCTTATAACCGTTTTTTTCTGTTTCTATCTCGTACGCGGAGTTTTAAGGATAGATGCTACGGTTTTACAAAAAAATGTACAAACAACGCAACGACATTTCTTTACTCTCTCGTTTTTAAGCATCCCTAAAATGGCAAACCGGCTTGATGAAACGTGATCGCAGAACATTCTTCGCTTGGTTCGG                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AGA281563            [                                                                                                                                                                                                                                                                           ttttttTTTACAGTGTACAGTAGAGGCTTTATTGTGTGTATTTCAACAAATCGTACGCATCACATCTCCCG TTTTTCCCCCCACGTATCGCTTTTTAAGTGGTTGGGTTTTCCAGCTTATAACCTTTTTTTTTTGTTTCTATCTCGTACTCGGAGTTTTAAGGATAGATGCTACGGTTTTACAAAAAAATGTACAAACAACGCAACGACATTTCTTTACTCTCTCGTTTTTAAGCATCCCTAAAATGGCAAACCGGCTTGATGAAACGTGATCGCAGAACATTCTTCGCTTGGTTTACAGATACTGCAGAAGGTGGGAAGGAGGGAAGGAAGAATATGGAATAAAGAGTGGCGCCTAATTCAAAGTGTTCTCTTCTGTCTCAAGGTATCAAGGTGAGAGAGGATCGGTTTTCCCCAGTGCTACGCTTTCACTATCTATTGAGGGGGGAVAGTCTAATGTAAAAATCGTTTCTGAGATTGAAGCAGTACAGGATCAATTAACGCTTTTTTGTTTTGTTCCTTTCTTTACCTAGCTGGAGCCTAGTGGTACATTTCTAATTGTTTGCTAAATGTTGTAACGTTTGCTAATGGGKCT]




>consensus_3467#0
CCATCCATTCCTCCTCGGAACCCAACACTCTTTTAATAATGAGATGATAATCAATTCGCA
TTTTTCCGACAGTGGTTTTAAGAAATTATTAAAAATACACCTTATCTGTGACGTGGTTTC
TTTCAGCTGCGACCGGTTCTCCACCGGTGGGAAATCGCATTTATAGAGCGCTCAGCCACT
CGGTTCTGATAATTTCGACTATCGACTATCGCCAAACTGGGCGATGTTTAACGCACGAAA
TGGAATACGAATTTCCTTACATTCCATAACCTGTTTACAGTGTACAGTAGAGGCTTTATT
GTGTGTATTTCAACAAGTCGTACGCATCATCTCCCGTTTTTTCCCCCCACGTATCGCTTT
TTAAGTGGTTGGGTTTTCCAGCTTATAACCGTTTTTTTCTGTTTCTATCTCGTACGCGGA
GTTTTAAGGATAGATGCTACGGTTTTACAAAAAAATGTACAAACAACGCAACGACATTTC
TTTACTCTCTCGTTTTTAAGCATCCCTAAAATGGCAAACCGGCTTGATGAAACGTGATCG
CAGAACATTCTTCGCTTGGTTCGGAGATACTGCAGAAGGTGGGAAGGAGGGAAGGAAGAA
TATGGAATAAAGAGTGGCGCCTAATTCAAAGTGTTCTCTTCTGTCTCAAGGTATCAAGGT
GAGAGAGGATCGGTTTTCCCCAGTGCTACGCTTTCACTATCTATTGAGGGGGGAVAGTCT
AATGTAAAAATCGTTTCTGAGATTGAAGCAGTACAGGATCAATTAACGCTTTTTTGTTTT
GTTCCTTTCTTTACCTAGCTGGAGCCTAGTGGTACATTTCTAATTGTTTGCTAAATGTTG
TAACGTTTGCTAATGGGKCT

consensusID : consensus_3467#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [GGTTGTTTCTTGTTGTGTCCATGCATTCGATCCGTTTAGGGTAGAAMAGAATACGTTTTACGTTTGTTTTAGATATTTTYATGTTGCTTGTATATTTTTGTGTCTTCTACTGCTTCCTTTGCTCTAAAGAATTAGGGTTTTTAGTGTGCCTTGGCTTTGTTTTTTATTACTTTCAATTATTTACCCATATATTCCACGTTCGCGTTAAGGGAAGGATCGCCAAACCATCCCACGATGGCGCCTTATAGCAAGCAGCGCAGTAATTATATTATTAGACCCATTAGCAAACGTTACAACATTTAGCAAACAAT]

[+] EMBL AGA283154            [GGTTGTTTCTTGTTGTGTCCATGCATTCGATCCGTTTAGGGTAGAAMAGAATACGTTTTACGTTTGTTTTAGATATTTTYATGTTGCTTGTATATTTTTGTGTCTTCTACTGCTTCCTTTGCTCTAAAGAATTAGGGTTTTTAGTGTGCCTTGGCTTTGTTTTTTATTACTTTCAATTATTTACCCATATATTCCACGTTCGCGTTAAGGGAAGGATCGCCAAACCATCCCACGATGGCGCCTTATAGCAAGCAGCGCAGTAATTATATTATTAGACCCATTAGCAAACGTTACAACATTTAGCAAACAAT]




>consensus_3467#1
GGTTGTTTCTTGTTGTGTCCATGCATTCGATCCGTTTAGGGTAGAAMAGAATACGTTTTA
CGTTTGTTTTAGATATTTTYATGTTGCTTGTATATTTTTGTGTCTTCTACTGCTTCCTTT
GCTCTAAAGAATTAGGGTTTTTAGTGTGCCTTGGCTTTGTTTTTTATTACTTTCAATTAT
TTACCCATATATTCCACGTTCGCGTTAAGGGAAGGATCGCCAAACCATCCCACGATGGCG
CCTTATAGCAAGCAGCGCAGTAATTATATTATTAGACCCATTAGCAAACGTTACAACATT
TAGCAAACAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3467#0      CCATCCATTCCTCCTCGGAACCCAACACTCTTTTAATAATGAGATGATAATCAATTCGCA 60
consensus_3467#1      --GGTTGTTTCTTGTTGTGTCCATGCATTCGATCCGTT-TAGGGTAGAAMAGAATACGTT 57
                             ** **  * *   **   ** **  *   *  *  * *   *   *** **  

consensus_3467#0      TTTTTCCGACAGTGGTTTTAAGAAATTATTAAAAATACACCTTATCTGTGACGTGGTTTC 120
consensus_3467#1      TT------ACGTTTGTTTTA-GATATTTTYA----TGTTGCTTGTATAT--TTTTGTGTC 104
                      **      **  * ****** ** *** * *    *    *** * * *    * ** **

consensus_3467#0      TTTCAGCTGCGACCGGTTCTCCACCGGTGGGAAATCGCATTTATAGAGCGCTCAGCCACT 180
consensus_3467#1      TTCTA-CTGCTTCCTTTGCTCTA-----AAGAATTAGGGTTTTTAGTGTGCCTTGGCTTT 158
                      **  * ****  **  * *** *       *** * *  *** *** * **   * *  *

consensus_3467#0      CGGTTCTGATAATTTCGACTATCGACTATCGCCAAACTGGGCGATGTTTAACGCACGAAA 240
consensus_3467#1      GTTTTTTATTACTTTCAATTATTTAC-----CCATA--------TATTCCACGTTCGCGT 205
                         ** *  ** **** * ***  **     *** *        * **  ***  **   

consensus_3467#0      TGGAATACGAATTTCCTTAC-ATTCCATAAC--CTGTTTACAGTGTACAGTAGAGGCTTT 297
consensus_3467#1      TAAGGGAAGGATCGCCAAACCATCCCACGATGGCGCCTTATAGCAAGCAGCGCAG---TA 262
                      *     * * **  **  ** ** ***  *   *   *** **    ***   **   * 

consensus_3467#0      ATTGTGTGTATTTCAACAAGTCGTACGCATCATCTCCCGTTTTTTCCCCCCACGTATCGC 357
consensus_3467#1      ATTATAT-TATTAGACCCATTAGCAAACGTTACAACA---TTTAGCAAACAAT------- 311
                      *** * * ****  * * * * * *  * * *   *    ***  *   * *        

consensus_3467#0      TTTTTAAGTGGTTGGGTTTTCCAGCTTATAACCGTTTTTTTCTGTTTCTATCTCGTACGC 417
consensus_3467#1      ------------------------------------------------------------
                                                                                  

consensus_3467#0      GGAGTTTTAAGGATAGATGCTACGGTTTTACAAAAAAATGTACAAACAACGCAACGACAT 477
consensus_3467#1      ------------------------------------------------------------
                                                                                  

consensus_3467#0      TTCTTTACTCTCTCGTTTTTAAGCATCCCTAAAATGGCAAACCGGCTTGATGAAACGTGA 537
consensus_3467#1      ------------------------------------------------------------
                                                                                  

consensus_3467#0      TCGCAGAACATTCTTCGCTTGGTTCGGAGATACTGCAGAAGGTGGGAAGGAGGGAAGGAA 597
consensus_3467#1      ------------------------------------------------------------
                                                                                  

consensus_3467#0      GAATATGGAATAAAGAGTGGCGCCTAATTCAAAGTGTTCTCTTCTGTCTCAAGGTATCAA 657
consensus_3467#1      ------------------------------------------------------------
                                                                                  

consensus_3467#0      GGTGAGAGAGGATCGGTTTTCCCCAGTGCTACGCTTTCACTATCTATTGAGGGGGGAVAG 717
consensus_3467#1      ------------------------------------------------------------
                                                                                  

consensus_3467#0      TCTAATGTAAAAATCGTTTCTGAGATTGAAGCAGTACAGGATCAATTAACGCTTTTTTGT 777
consensus_3467#1      ------------------------------------------------------------
                                                                                  

consensus_3467#0      TTTGTTCCTTTCTTTACCTAGCTGGAGCCTAGTGGTACATTTCTAATTGTTTGCTAAATG 837
consensus_3467#1      ------------------------------------------------------------
                                                                                  

consensus_3467#0      TTGTAACGTTTGCTAATGGGKCT 860
consensus_3467#1      -----------------------