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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 832 fasta sequence
[GCAGAATNGCCCGNGGTTATTGTCCTGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAAATCTCAAACAACAAAACATAACCGGGGTGACGGAACTCTTAGCACCCAAATGACCAACATCGAGCAGCACCATGACGTGGTTAATTGAAAGCTTTTTTCACTTCATCCGCAAACATATACCGAAAGACGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTCTACTNGAGGATGATGTCGGCGTACTTTAACGACTTTGCGAACATTCGAACCGGAAACGGTGTGCGCCTGGATATTCGAGCTGGAAAATCAAATCTACCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTACGGCTCAANTCGCTGTCCTGGTCGATATGATACCGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGGGACACGAACTCGCACNAAAGCGTACCCATCGCCTGTTCGNACANCGATGGCGGCGTCGAACCGNAGGGGCGTGCCAAGCTAACCGAATCTTGTATTGCGCGAAGCAGATGCTGACCATTTCCTGNCAGCGGANANATGTTTNCCCGACNCNAGGTNCACTCTATTCGNGAGGGGTCCAAGGCCATTTGGCGCTCCTGATCCGCGAANTGGNAGGAACGTNGAACGGGGCGCACACAAATACGTGGTACCATCGGCACGTATGCGGCCCACAGCNTAGGGNCCNTNCAACACTATTGCTGAGGNGAA]
[+] EMBL AL693926 [GCAGAATNGCCCGNGGTTATTGTCCTGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAAATCTCAAACAACAAAACATAACCGGGGTGACGGAACTCTTAGCACCCAAATGACCAACATCGAGCAGCACCATGACGTGGTTAATTGAAAGCTTTTTTCACTTCATCCGCAAACATATACCGAAAGACGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTCTACTNGAGGATGATGTCGGCGTACTTTAACGACTTTGCGAACATTCGAACCGGAAACGGTGTGCGCCTGGATATTCGAGCTGGAAAATCAAATCTACCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTACGGCTCAANTCGCTGTCCTGGTCGATATGATACCGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGGGACACGAACTCGCACNAAAGCGTACCCATCGCCTGTTCGNACANCGATGGCGGCGTCGAACCGNAGGGGCGTGCCAAGCTAACCGAATCTTGTATTGCGCGAAGCAGATGCTGACCATTTCCTGNCAGCGGANANATGTTTNCCCGACNCNAGGTNCACTCTATTCGNGAGGGGTCCAAGGCCATTTGGCGCTCCTGATCCGCGAANTGGNAGGAACGTNGAACGGGGCGCACACAAATACGTGGTACCATCGGCACGTATGCGGCCCACAGCNTAGGGNCCNTNCAACACTATTGCTGAGGNGAA]
consensusID : consensus_3479#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCAGAATCTGCTGTCCACCTCCCCTCTGTTGAAATCTGGTTCTGGAAATATCGGTGAATTCTGGTCCGCATTAGTGTGTAATTAGGCGTGTAATTGTCCGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAAATCTCAAACAACAAAACATAACCGGGGGACGGAACTCTTAGCACCCAAATGACCAACATCGAGCAGCACCATGACGTGGTTAAGGAAAGCTTTTTTCACTTCATCCGCAAACATATACCGAAAGCGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTTATTGAGATGATGTCGGCGTACTTTAACGACTTTGCGAACATCGAACCGGAAACGGTGTGCGCCTGGATATTCGAGCTGGAAAATCAAATCTCCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTCGCTCAACTCGCTGTCCCTGGTCGATATGA-TACCGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGGGACACGACTCGCACAAACGTACCCATCGCCTTTCGGACAGCGATGGCGGCTCGACCGAGGGCTGCAACTACGACC]
[+] EMBL BM615793 [CCGCCCACGCGTCCGCCCACGCGTCCGGCAGAATCTGCTGTCCACCTCCCCTCTGTTGAAATCTGGTTCTGGAAATATCGGTGAATTCTGGTCCGCATTAGTGTGTAATTAGGCGTGTAATTGTCCGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAAATCTCAAACAACAAAACATAACCGGGGGACGGAACTCTTAGCACCCAAATGACCAACATCGAGCAGCACCATGACGTGGTTAAGGAAAGCTTTTTTCACTTCATCCGCAAACATATACCGAAAGCGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTTATTGAGATGATGTCGGCGTACTTTAACGACTTTGCGAACATCGAACCGGAAACGGTGTGCGCCTGGATATTCGAGCTGGAAAATCAAATCTCCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTCGCTCAACTCGCTGTCCCTGGTCGATATGA TACCGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGGGACACGACTCGCACAAACGTACCCATCGCCTTTCGGACAGCGATGGCGGCTCGACCGAGGGCTGCAACTACGACC]
[+] EMBL AGA281803 [ GACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTTATTGAGATGATGTCGGCGTACTTTAACGACTTTGCGAACATCGAACCGGAAACGGTGTGCGCCTGGATATTTGAGCTGGAAAATCAAATCTCCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTCGCTCAACTCGCTGTCCCTGGTCGATATGANTA CGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3479#0 ------------------------------------------------------------
consensus_3479#1 CCGCCCACGCGTCCGCCCACGCGTCCGGCAGAATCTGCTGTCCACCTCCCCTCTGTTGAA 60
consensus_3479#0 ------------------------------------------GCAGAATNGCCCGNGGTT 18
consensus_3479#1 ATCTGGTTCTGGAAATATCGGTGAATTCTGGTCCGCATTAGTGTGTAATTAGGCGTG-TA 119
* *** ** * *
consensus_3479#0 ATTGTCCTGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAA 78
consensus_3479#1 ATTGTCC-GCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAA 178
******* ****************************************************
consensus_3479#0 ATCTCAAACAACAAAACATAACCGGGGTGACGGAACTCTTAGCACCCAAATGACCAACAT 138
consensus_3479#1 ATCTCAAACAACAAAACATAACCGGGG-GACGGAACTCTTAGCACCCAAATGACCAACAT 237
*************************** ********************************
consensus_3479#0 CGAGCAGCACCATGACGTGGTTAATTGAAAGCTTTTTTCACTTCATCCGCAAACATATAC 198
consensus_3479#1 CGAGCAGCACCATGACGTGGTTAAG-GAAAGCTTTTTTCACTTCATCCGCAAACATATAC 296
************************ **********************************
consensus_3479#0 CGAAAGACGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTC 258
consensus_3479#1 CGAAAG-CGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTC 355
****** *****************************************************
consensus_3479#0 GAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTCTACTNGAGGATGATGTCG 318
consensus_3479#1 GAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTT-TATTGA--GATGATGTCG 412
***************************************** ** * **********
consensus_3479#0 GCGTACTTTAACGACTTTGCGAACATTCGAACCGGAAACGGTGTGCGCCTGGATATTCGA 378
consensus_3479#1 GCGTACTTTAACGACTTTGCGAACAT-CGAACCGGAAACGGTGTGCGCCTGGATATTCGA 471
************************** *********************************
consensus_3479#0 GCTGGAAAATCAAATCTACCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGT 438
consensus_3479#1 GCTGGAAAATCAAATCT-CCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGT 530
***************** ******************************************
consensus_3479#0 ACGGCTCAANTCGCTGTCC-TGGTCGATATGATACCGGAGGAGAAGCTGCGGGGACGCCA 497
consensus_3479#1 --CGCTCAACTCGCTGTCCCTGGTCGATATGATACCGGAGGAGAAGCTGCGGGGACGCCA 588
****** ********* ****************************************
consensus_3479#0 TTCGTCCGAATCGGACCGGGAGGGGATGGGACACGAACTCGCACNAAAGCGTACCCATCG 557
consensus_3479#1 TTCGTCCGAATCGGACCGGGAGGGGATGGGACACGA-CTCGCACAAA--CGTACCCATCG 645
************************************ ******* ** ***********
consensus_3479#0 CCTGTTCGNACANCGATGGCGGCGTCGAACCGNAGGGGCGTGCCAAGCTAACCGAATCTT 617
consensus_3479#1 CCT-TTCGGACAGCGATGGCGGC-TCGA-CCGAGGGC---TGCAACTACGACC------- 692
*** **** *** ********** **** *** ** *** * ***
consensus_3479#0 GTATTGCGCGAAGCAGATGCTGACCATTTCCTGNCAGCGGANANATGTTTNCCCGACNCN 677
consensus_3479#1 ------------------------------------------------------------
consensus_3479#0 AGGTNCACTCTATTCGNGAGGGGTCCAAGGCCATTTGGCGCTCCTGATCCGCGAANTGGN 737
consensus_3479#1 ------------------------------------------------------------
consensus_3479#0 AGGAACGTNGAACGGGGCGCACACAAATACGTGGTACCATCGGCACGTATGCGGCCCACA 797
consensus_3479#1 ------------------------------------------------------------
consensus_3479#0 GCNTAGGGNCCNTNCAACACTATTGCTGAGGNGAA 832
consensus_3479#1 -----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||