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Anopheles gambiae
cluster # 3479 cluster # 3479       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3479#0 length = 832 sequences # 1  
consensus_3479#1 length = 692 sequences # 2  

consensusID : consensus_3479#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 832
fasta sequence
                              [GCAGAATNGCCCGNGGTTATTGTCCTGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAAATCTCAAACAACAAAACATAACCGGGGTGACGGAACTCTTAGCACCCAAATGACCAACATCGAGCAGCACCATGACGTGGTTAATTGAAAGCTTTTTTCACTTCATCCGCAAACATATACCGAAAGACGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTCTACTNGAGGATGATGTCGGCGTACTTTAACGACTTTGCGAACATTCGAACCGGAAACGGTGTGCGCCTGGATATTCGAGCTGGAAAATCAAATCTACCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTACGGCTCAANTCGCTGTCCTGGTCGATATGATACCGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGGGACACGAACTCGCACNAAAGCGTACCCATCGCCTGTTCGNACANCGATGGCGGCGTCGAACCGNAGGGGCGTGCCAAGCTAACCGAATCTTGTATTGCGCGAAGCAGATGCTGACCATTTCCTGNCAGCGGANANATGTTTNCCCGACNCNAGGTNCACTCTATTCGNGAGGGGTCCAAGGCCATTTGGCGCTCCTGATCCGCGAANTGGNAGGAACGTNGAACGGGGCGCACACAAATACGTGGTACCATCGGCACGTATGCGGCCCACAGCNTAGGGNCCNTNCAACACTATTGCTGAGGNGAA]

[+] EMBL AL693926             [GCAGAATNGCCCGNGGTTATTGTCCTGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAAATCTCAAACAACAAAACATAACCGGGGTGACGGAACTCTTAGCACCCAAATGACCAACATCGAGCAGCACCATGACGTGGTTAATTGAAAGCTTTTTTCACTTCATCCGCAAACATATACCGAAAGACGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTCTACTNGAGGATGATGTCGGCGTACTTTAACGACTTTGCGAACATTCGAACCGGAAACGGTGTGCGCCTGGATATTCGAGCTGGAAAATCAAATCTACCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTACGGCTCAANTCGCTGTCCTGGTCGATATGATACCGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGGGACACGAACTCGCACNAAAGCGTACCCATCGCCTGTTCGNACANCGATGGCGGCGTCGAACCGNAGGGGCGTGCCAAGCTAACCGAATCTTGTATTGCGCGAAGCAGATGCTGACCATTTCCTGNCAGCGGANANATGTTTNCCCGACNCNAGGTNCACTCTATTCGNGAGGGGTCCAAGGCCATTTGGCGCTCCTGATCCGCGAANTGGNAGGAACGTNGAACGGGGCGCACACAAATACGTGGTACCATCGGCACGTATGCGGCCCACAGCNTAGGGNCCNTNCAACACTATTGCTGAGGNGAA]


>consensus_3479#0 GCAGAATNGCCCGNGGTTATTGTCCTGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTG TGCGATCAGTTCGACCAAATCTCAAACAACAAAACATAACCGGGGTGACGGAACTCTTAG CACCCAAATGACCAACATCGAGCAGCACCATGACGTGGTTAATTGAAAGCTTTTTTCACT TCATCCGCAAACATATACCGAAAGACGGACCTGAGCATCGTCGACGAGATCGTGCTGTCG TACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTC TACTNGAGGATGATGTCGGCGTACTTTAACGACTTTGCGAACATTCGAACCGGAAACGGT GTGCGCCTGGATATTCGAGCTGGAAAATCAAATCTACCAACAAGAACCCGAACTCGAAGT CGGAATCGAACAATCTGTACGGCTCAANTCGCTGTCCTGGTCGATATGATACCGGAGGAG AAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGGGACACGAACTCGCA CNAAAGCGTACCCATCGCCTGTTCGNACANCGATGGCGGCGTCGAACCGNAGGGGCGTGC CAAGCTAACCGAATCTTGTATTGCGCGAAGCAGATGCTGACCATTTCCTGNCAGCGGANA NATGTTTNCCCGACNCNAGGTNCACTCTATTCGNGAGGGGTCCAAGGCCATTTGGCGCTC CTGATCCGCGAANTGGNAGGAACGTNGAACGGGGCGCACACAAATACGTGGTACCATCGG CACGTATGCGGCCCACAGCNTAGGGNCCNTNCAACACTATTGCTGAGGNGAA



consensusID : consensus_3479#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 692
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCAGAATCTGCTGTCCACCTCCCCTCTGTTGAAATCTGGTTCTGGAAATATCGGTGAATTCTGGTCCGCATTAGTGTGTAATTAGGCGTGTAATTGTCCGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAAATCTCAAACAACAAAACATAACCGGGGGACGGAACTCTTAGCACCCAAATGACCAACATCGAGCAGCACCATGACGTGGTTAAGGAAAGCTTTTTTCACTTCATCCGCAAACATATACCGAAAGCGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTTATTGAGATGATGTCGGCGTACTTTAACGACTTTGCGAACATCGAACCGGAAACGGTGTGCGCCTGGATATTCGAGCTGGAAAATCAAATCTCCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTCGCTCAACTCGCTGTCCCTGGTCGATATGA-TACCGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGGGACACGACTCGCACAAACGTACCCATCGCCTTTCGGACAGCGATGGCGGCTCGACCGAGGGCTGCAACTACGACC]

[+] EMBL BM615793             [CCGCCCACGCGTCCGCCCACGCGTCCGGCAGAATCTGCTGTCCACCTCCCCTCTGTTGAAATCTGGTTCTGGAAATATCGGTGAATTCTGGTCCGCATTAGTGTGTAATTAGGCGTGTAATTGTCCGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAAATCTCAAACAACAAAACATAACCGGGGGACGGAACTCTTAGCACCCAAATGACCAACATCGAGCAGCACCATGACGTGGTTAAGGAAAGCTTTTTTCACTTCATCCGCAAACATATACCGAAAGCGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTTATTGAGATGATGTCGGCGTACTTTAACGACTTTGCGAACATCGAACCGGAAACGGTGTGCGCCTGGATATTCGAGCTGGAAAATCAAATCTCCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTCGCTCAACTCGCTGTCCCTGGTCGATATGA TACCGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGGGACACGACTCGCACAAACGTACCCATCGCCTTTCGGACAGCGATGGCGGCTCGACCGAGGGCTGCAACTACGACC]
[+] EMBL AGA281803            [                                                                                                                                                                                                                                                                                                                GACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTTATTGAGATGATGTCGGCGTACTTTAACGACTTTGCGAACATCGAACCGGAAACGGTGTGCGCCTGGATATTTGAGCTGGAAAATCAAATCTCCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTCGCTCAACTCGCTGTCCCTGGTCGATATGANTA CGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGG                                                                           ]


>consensus_3479#1 CCGCCCACGCGTCCGCCCACGCGTCCGGCAGAATCTGCTGTCCACCTCCCCTCTGTTGAA ATCTGGTTCTGGAAATATCGGTGAATTCTGGTCCGCATTAGTGTGTAATTAGGCGTGTAA TTGTCCGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAAAT CTCAAACAACAAAACATAACCGGGGGACGGAACTCTTAGCACCCAAATGACCAACATCGA GCAGCACCATGACGTGGTTAAGGAAAGCTTTTTTCACTTCATCCGCAAACATATACCGAA AGCGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGA AGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTTATTGAGATGATGTCGGCGTACTT TAACGACTTTGCGAACATCGAACCGGAAACGGTGTGCGCCTGGATATTCGAGCTGGAAAA TCAAATCTCCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTCGCTCAACTC GCTGTCCCTGGTCGATATGATACCGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATC GGACCGGGAGGGGATGGGACACGACTCGCACAAACGTACCCATCGCCTTTCGGACAGCGA TGGCGGCTCGACCGAGGGCTGCAACTACGACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3479#0      ------------------------------------------------------------
consensus_3479#1      CCGCCCACGCGTCCGCCCACGCGTCCGGCAGAATCTGCTGTCCACCTCCCCTCTGTTGAA 60
                                                                                  

consensus_3479#0      ------------------------------------------GCAGAATNGCCCGNGGTT 18
consensus_3479#1      ATCTGGTTCTGGAAATATCGGTGAATTCTGGTCCGCATTAGTGTGTAATTAGGCGTG-TA 119
                                                                *   ***    ** * * 

consensus_3479#0      ATTGTCCTGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAA 78
consensus_3479#1      ATTGTCC-GCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAA 178
                      ******* ****************************************************

consensus_3479#0      ATCTCAAACAACAAAACATAACCGGGGTGACGGAACTCTTAGCACCCAAATGACCAACAT 138
consensus_3479#1      ATCTCAAACAACAAAACATAACCGGGG-GACGGAACTCTTAGCACCCAAATGACCAACAT 237
                      *************************** ********************************

consensus_3479#0      CGAGCAGCACCATGACGTGGTTAATTGAAAGCTTTTTTCACTTCATCCGCAAACATATAC 198
consensus_3479#1      CGAGCAGCACCATGACGTGGTTAAG-GAAAGCTTTTTTCACTTCATCCGCAAACATATAC 296
                      ************************  **********************************

consensus_3479#0      CGAAAGACGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTC 258
consensus_3479#1      CGAAAG-CGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTC 355
                      ****** *****************************************************

consensus_3479#0      GAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTCTACTNGAGGATGATGTCG 318
consensus_3479#1      GAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTT-TATTGA--GATGATGTCG 412
                      ***************************************** ** *    **********

consensus_3479#0      GCGTACTTTAACGACTTTGCGAACATTCGAACCGGAAACGGTGTGCGCCTGGATATTCGA 378
consensus_3479#1      GCGTACTTTAACGACTTTGCGAACAT-CGAACCGGAAACGGTGTGCGCCTGGATATTCGA 471
                      ************************** *********************************

consensus_3479#0      GCTGGAAAATCAAATCTACCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGT 438
consensus_3479#1      GCTGGAAAATCAAATCT-CCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGT 530
                      ***************** ******************************************

consensus_3479#0      ACGGCTCAANTCGCTGTCC-TGGTCGATATGATACCGGAGGAGAAGCTGCGGGGACGCCA 497
consensus_3479#1      --CGCTCAACTCGCTGTCCCTGGTCGATATGATACCGGAGGAGAAGCTGCGGGGACGCCA 588
                         ****** ********* ****************************************

consensus_3479#0      TTCGTCCGAATCGGACCGGGAGGGGATGGGACACGAACTCGCACNAAAGCGTACCCATCG 557
consensus_3479#1      TTCGTCCGAATCGGACCGGGAGGGGATGGGACACGA-CTCGCACAAA--CGTACCCATCG 645
                      ************************************ ******* **  ***********

consensus_3479#0      CCTGTTCGNACANCGATGGCGGCGTCGAACCGNAGGGGCGTGCCAAGCTAACCGAATCTT 617
consensus_3479#1      CCT-TTCGGACAGCGATGGCGGC-TCGA-CCGAGGGC---TGCAACTACGACC------- 692
                      *** **** *** ********** **** ***  **    *** *     ***       

consensus_3479#0      GTATTGCGCGAAGCAGATGCTGACCATTTCCTGNCAGCGGANANATGTTTNCCCGACNCN 677
consensus_3479#1      ------------------------------------------------------------
                                                                                  

consensus_3479#0      AGGTNCACTCTATTCGNGAGGGGTCCAAGGCCATTTGGCGCTCCTGATCCGCGAANTGGN 737
consensus_3479#1      ------------------------------------------------------------
                                                                                  

consensus_3479#0      AGGAACGTNGAACGGGGCGCACACAAATACGTGGTACCATCGGCACGTATGCGGCCCACA 797
consensus_3479#1      ------------------------------------------------------------
                                                                                  

consensus_3479#0      GCNTAGGGNCCNTNCAACACTATTGCTGAGGNGAA 832
consensus_3479#1      -----------------------------------
                                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)