These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 832 fasta sequence [GCAGAATNGCCCGNGGTTATTGTCCTGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAAATCTCAAACAACAAAACATAACCGGGGTGACGGAACTCTTAGCACCCAAATGACCAACATCGAGCAGCACCATGACGTGGTTAATTGAAAGCTTTTTTCACTTCATCCGCAAACATATACCGAAAGACGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTCTACTNGAGGATGATGTCGGCGTACTTTAACGACTTTGCGAACATTCGAACCGGAAACGGTGTGCGCCTGGATATTCGAGCTGGAAAATCAAATCTACCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTACGGCTCAANTCGCTGTCCTGGTCGATATGATACCGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGGGACACGAACTCGCACNAAAGCGTACCCATCGCCTGTTCGNACANCGATGGCGGCGTCGAACCGNAGGGGCGTGCCAAGCTAACCGAATCTTGTATTGCGCGAAGCAGATGCTGACCATTTCCTGNCAGCGGANANATGTTTNCCCGACNCNAGGTNCACTCTATTCGNGAGGGGTCCAAGGCCATTTGGCGCTCCTGATCCGCGAANTGGNAGGAACGTNGAACGGGGCGCACACAAATACGTGGTACCATCGGCACGTATGCGGCCCACAGCNTAGGGNCCNTNCAACACTATTGCTGAGGNGAA] [+] EMBL AL693926 [GCAGAATNGCCCGNGGTTATTGTCCTGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAAATCTCAAACAACAAAACATAACCGGGGTGACGGAACTCTTAGCACCCAAATGACCAACATCGAGCAGCACCATGACGTGGTTAATTGAAAGCTTTTTTCACTTCATCCGCAAACATATACCGAAAGACGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTCTACTNGAGGATGATGTCGGCGTACTTTAACGACTTTGCGAACATTCGAACCGGAAACGGTGTGCGCCTGGATATTCGAGCTGGAAAATCAAATCTACCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTACGGCTCAANTCGCTGTCCTGGTCGATATGATACCGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGGGACACGAACTCGCACNAAAGCGTACCCATCGCCTGTTCGNACANCGATGGCGGCGTCGAACCGNAGGGGCGTGCCAAGCTAACCGAATCTTGTATTGCGCGAAGCAGATGCTGACCATTTCCTGNCAGCGGANANATGTTTNCCCGACNCNAGGTNCACTCTATTCGNGAGGGGTCCAAGGCCATTTGGCGCTCCTGATCCGCGAANTGGNAGGAACGTNGAACGGGGCGCACACAAATACGTGGTACCATCGGCACGTATGCGGCCCACAGCNTAGGGNCCNTNCAACACTATTGCTGAGGNGAA] consensusID : consensus_3479#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCAGAATCTGCTGTCCACCTCCCCTCTGTTGAAATCTGGTTCTGGAAATATCGGTGAATTCTGGTCCGCATTAGTGTGTAATTAGGCGTGTAATTGTCCGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAAATCTCAAACAACAAAACATAACCGGGGGACGGAACTCTTAGCACCCAAATGACCAACATCGAGCAGCACCATGACGTGGTTAAGGAAAGCTTTTTTCACTTCATCCGCAAACATATACCGAAAGCGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTTATTGAGATGATGTCGGCGTACTTTAACGACTTTGCGAACATCGAACCGGAAACGGTGTGCGCCTGGATATTCGAGCTGGAAAATCAAATCTCCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTCGCTCAACTCGCTGTCCCTGGTCGATATGA-TACCGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGGGACACGACTCGCACAAACGTACCCATCGCCTTTCGGACAGCGATGGCGGCTCGACCGAGGGCTGCAACTACGACC] [+] EMBL BM615793 [CCGCCCACGCGTCCGCCCACGCGTCCGGCAGAATCTGCTGTCCACCTCCCCTCTGTTGAAATCTGGTTCTGGAAATATCGGTGAATTCTGGTCCGCATTAGTGTGTAATTAGGCGTGTAATTGTCCGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAAATCTCAAACAACAAAACATAACCGGGGGACGGAACTCTTAGCACCCAAATGACCAACATCGAGCAGCACCATGACGTGGTTAAGGAAAGCTTTTTTCACTTCATCCGCAAACATATACCGAAAGCGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTTATTGAGATGATGTCGGCGTACTTTAACGACTTTGCGAACATCGAACCGGAAACGGTGTGCGCCTGGATATTCGAGCTGGAAAATCAAATCTCCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTCGCTCAACTCGCTGTCCCTGGTCGATATGA TACCGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGGGACACGACTCGCACAAACGTACCCATCGCCTTTCGGACAGCGATGGCGGCTCGACCGAGGGCTGCAACTACGACC] [+] EMBL AGA281803 [ GACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTCGAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTTATTGAGATGATGTCGGCGTACTTTAACGACTTTGCGAACATCGAACCGGAAACGGTGTGCGCCTGGATATTTGAGCTGGAAAATCAAATCTCCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGTCGCTCAACTCGCTGTCCCTGGTCGATATGANTA CGGAGGAGAAGCTGCGGGGACGCCATTCGTCCGAATCGGACCGGGAGGGGATGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3479#0 ------------------------------------------------------------ consensus_3479#1 CCGCCCACGCGTCCGCCCACGCGTCCGGCAGAATCTGCTGTCCACCTCCCCTCTGTTGAA 60 consensus_3479#0 ------------------------------------------GCAGAATNGCCCGNGGTT 18 consensus_3479#1 ATCTGGTTCTGGAAATATCGGTGAATTCTGGTCCGCATTAGTGTGTAATTAGGCGTG-TA 119 * *** ** * * consensus_3479#0 ATTGTCCTGCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAA 78 consensus_3479#1 ATTGTCC-GCTTGCGTAGTCAATTTTCCAACCACAGTGTTTGTGCGATCAGTTCGACCAA 178 ******* **************************************************** consensus_3479#0 ATCTCAAACAACAAAACATAACCGGGGTGACGGAACTCTTAGCACCCAAATGACCAACAT 138 consensus_3479#1 ATCTCAAACAACAAAACATAACCGGGG-GACGGAACTCTTAGCACCCAAATGACCAACAT 237 *************************** ******************************** consensus_3479#0 CGAGCAGCACCATGACGTGGTTAATTGAAAGCTTTTTTCACTTCATCCGCAAACATATAC 198 consensus_3479#1 CGAGCAGCACCATGACGTGGTTAAG-GAAAGCTTTTTTCACTTCATCCGCAAACATATAC 296 ************************ ********************************** consensus_3479#0 CGAAAGACGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTC 258 consensus_3479#1 CGAAAG-CGGACCTGAGCATCGTCGACGAGATCGTGCTGTCGTACGTAATATCCATCCTC 355 ****** ***************************************************** consensus_3479#0 GAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTTCTACTNGAGGATGATGTCG 318 consensus_3479#1 GAGGAAGCCTCCCAGGATCCGTGCTTCGATGTGGAAGGCTT-TATTGA--GATGATGTCG 412 ***************************************** ** * ********** consensus_3479#0 GCGTACTTTAACGACTTTGCGAACATTCGAACCGGAAACGGTGTGCGCCTGGATATTCGA 378 consensus_3479#1 GCGTACTTTAACGACTTTGCGAACAT-CGAACCGGAAACGGTGTGCGCCTGGATATTCGA 471 ************************** ********************************* consensus_3479#0 GCTGGAAAATCAAATCTACCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGT 438 consensus_3479#1 GCTGGAAAATCAAATCT-CCAACAAGAACCCGAACTCGAAGTCGGAATCGAACAATCTGT 530 ***************** ****************************************** consensus_3479#0 ACGGCTCAANTCGCTGTCC-TGGTCGATATGATACCGGAGGAGAAGCTGCGGGGACGCCA 497 consensus_3479#1 --CGCTCAACTCGCTGTCCCTGGTCGATATGATACCGGAGGAGAAGCTGCGGGGACGCCA 588 ****** ********* **************************************** consensus_3479#0 TTCGTCCGAATCGGACCGGGAGGGGATGGGACACGAACTCGCACNAAAGCGTACCCATCG 557 consensus_3479#1 TTCGTCCGAATCGGACCGGGAGGGGATGGGACACGA-CTCGCACAAA--CGTACCCATCG 645 ************************************ ******* ** *********** consensus_3479#0 CCTGTTCGNACANCGATGGCGGCGTCGAACCGNAGGGGCGTGCCAAGCTAACCGAATCTT 617 consensus_3479#1 CCT-TTCGGACAGCGATGGCGGC-TCGA-CCGAGGGC---TGCAACTACGACC------- 692 *** **** *** ********** **** *** ** *** * *** consensus_3479#0 GTATTGCGCGAAGCAGATGCTGACCATTTCCTGNCAGCGGANANATGTTTNCCCGACNCN 677 consensus_3479#1 ------------------------------------------------------------ consensus_3479#0 AGGTNCACTCTATTCGNGAGGGGTCCAAGGCCATTTGGCGCTCCTGATCCGCGAANTGGN 737 consensus_3479#1 ------------------------------------------------------------ consensus_3479#0 AGGAACGTNGAACGGGGCGCACACAAATACGTGGTACCATCGGCACGTATGCGGCCCACA 797 consensus_3479#1 ------------------------------------------------------------ consensus_3479#0 GCNTAGGGNCCNTNCAACACTATTGCTGAGGNGAA 832 consensus_3479#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||