cluster # 3483

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Anopheles gambiae
cluster # 3483 cluster # 3483 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3483#0 length = 972 sequences # 2

consensus_3483#1 length = 346 sequences # 1

consensusID : consensus_3483#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 972
fasta sequence

                              [ACCTCCTCGTATATCTGTTATTTTATGTACATTTCCGAAACGATACGCAAAAAGCATTCAATTTGAGATAGGCTTTAAATTCGTGTATATAATAGGTAGTAAGTGTTTGCATTGGCGTTTCTATTCTTAACTACGGAAATGGGAGGAGGGGGTGAAAAAAGAAAGTCTCGTATATACGCGAAAACAAGCACAGCTAGAATGCCAACAATCTTAATCATCGTATTATTGCGTAATGTTCCTCCTCCTTAGCGCACCGACACGATGGCGCGTGCGTGGCTGCCTACTGTCGCTTTCTACGAGGTAATGTTTAGTTTAGTGCTTTCCTTTTTTTTCGCGATTTTTTTGGAGGCGCTATATAAATGGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGTATACATATATTGCCGCACCCTTAGTGGCAAAACCCAGTACAACCGGCTTCTGCTGGTAGTGAGTTCAGAAGCGGTCATGGGTTTCCAATTGCTCCCGAAGATGCAGGAAAAAAGGGGCTGATGAGGAATTAGTAAGAGGGTGTGTGTATCGCTGATTGTCTAATCGCTTAGCTTCACTTTCTTGGCAGCGCTTGATCCACCCTCGTGATCTTGTGCCTGTGGCTCCGCTTCATTCCCTTCCAGCGATGATGACGATGATGATGATGATGGCACAACAGTGGAACAGGATGAGTTATTTTTTGTTTTGGGGTACAGCCGCTTCAGCATGCCGGCCGCCGGGCGAGGTTTCATGCTGCACTGCTTGATCGTGGCCGCTGCCGCCGCTGCCACCGATTCCGTCCGCTCCGGACCGTCGACCGAGGGCGCACCGAACCCGAGCTGATTAATGTTGGCCAGCAGTTCCAGGTTCTTCGTTTCGGACTCGTCCAGCCGGCGGCGTAGCTCCTTAATCTCCCCGCCGTACCGCACGAGCAGCAGGCGCATGTTGCGCATTTCCGCCT]

[+] EMBL CNS097G6             [ACCTCCTCGTATATCTGTTATTTTATGTACATTTCCGAAACGATACGCAAAAAGCATTCAATTTGAGATAGGCTTTAAATTCGTGTATATAATAGGTAGTAAGTGTTTGCATTGGCGTTTCTATTCTTAACTACGGAAATGGGAGGAGGGGGTGAAAAAAGAAAGTCTCGTATATACGCGAAAACAAGCACAGCTAGAATGCCAACAATCTTAATCATCGTATTATTGCGTAATGTTCCTCCTCCTTAGCGCACCGACACGATGGCGCGTGCGTGGCTGCCTACTGTCGCTTTCTACGAGGTAATGTTTAGTTTAGTGCTTTCCTTTTTTTTCGCGATTTTTTTGGAGGCGCTATATAAATGGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGTATACATATATTGCCGCACCCTTAGTGGCAAAACCCAGTACAACCGGCTTCTGCTGGTAGTGAGTTCAGAAGCGGTCATGGGTTTCCAATTGCTCCCGAAGATGCAGGAAAAAAGGGGCTGATGAGGAATTAGTAAGAGGGTGTGTGTATCGCTGATTGTCTAATCGCTTAGCTTCACTTTCTTGGCAGCGCTTGATCCACCCTCGTGATCTTGTGCCTGTGGCTCCGCTTCATTCCCTTCCAGCGATGATGACGATGATGATGATGATGGCACAACAGTGGAACAGGATGAGTTATTTTTTGTTTTGGGGTACAGCCGCTTCAGCATGCC                                                                                                                                                                                                                                      ]
[-] EMBL BX608145             [                                                                                                                                                                                                                                                                                                                                                                 ATATAAATGGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGTATACATATATTGCCGCACCCTTAGTGGCAAAACCCAGTACAACCGGCTTCTGCTGGTAGTGAGTTCAGAAGCGGTCATGGGTTTCCAATTGCTCCCGGAGATGCAAG AAAAAGGGGCTGATGAGGAATTAGTAAGAGGGTG      TCGCTGATTGTCTAATCGCTTAGCTTCACTTTCTTGGCAGCGCTTGATCCACCCTCGTGATCTTGTGCCTGTGGCTCCGCTTCATTCCCTTCCAGCGATGATGAC   GATGATGATGATGGCACAACAGTGGAACTGGATGAGTGAGATTCTGTGTCGGGGTACAGCCGCTTCAGCATGCTGGCCGCCGGGCGAGGTTTCATGCTGCACTGCTTGATCGTGGCCGCTGCCGCCGCTGCCACCGATTCCGTCCGCTCCGGACCGTCGACCGAGGGCGCACCGAACCCGAGCTGATTAATGTTGGCCAGCAGTTCCAGGTTCTTCGTTTCGGACTCGTCCAGCCGGCGGCGTAGCTCCTTAATCTCCCCGCCGTACCGCACGAGCAGCAGGCGCATGTTGCGCATTTCCGCCT]




>consensus_3483#0
ACCTCCTCGTATATCTGTTATTTTATGTACATTTCCGAAACGATACGCAAAAAGCATTCA
ATTTGAGATAGGCTTTAAATTCGTGTATATAATAGGTAGTAAGTGTTTGCATTGGCGTTT
CTATTCTTAACTACGGAAATGGGAGGAGGGGGTGAAAAAAGAAAGTCTCGTATATACGCG
AAAACAAGCACAGCTAGAATGCCAACAATCTTAATCATCGTATTATTGCGTAATGTTCCT
CCTCCTTAGCGCACCGACACGATGGCGCGTGCGTGGCTGCCTACTGTCGCTTTCTACGAG
GTAATGTTTAGTTTAGTGCTTTCCTTTTTTTTCGCGATTTTTTTGGAGGCGCTATATAAA
TGGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGTATACATAT
ATTGCCGCACCCTTAGTGGCAAAACCCAGTACAACCGGCTTCTGCTGGTAGTGAGTTCAG
AAGCGGTCATGGGTTTCCAATTGCTCCCGAAGATGCAGGAAAAAAGGGGCTGATGAGGAA
TTAGTAAGAGGGTGTGTGTATCGCTGATTGTCTAATCGCTTAGCTTCACTTTCTTGGCAG
CGCTTGATCCACCCTCGTGATCTTGTGCCTGTGGCTCCGCTTCATTCCCTTCCAGCGATG
ATGACGATGATGATGATGATGGCACAACAGTGGAACAGGATGAGTTATTTTTTGTTTTGG
GGTACAGCCGCTTCAGCATGCCGGCCGCCGGGCGAGGTTTCATGCTGCACTGCTTGATCG
TGGCCGCTGCCGCCGCTGCCACCGATTCCGTCCGCTCCGGACCGTCGACCGAGGGCGCAC
CGAACCCGAGCTGATTAATGTTGGCCAGCAGTTCCAGGTTCTTCGTTTCGGACTCGTCCA
GCCGGCGGCGTAGCTCCTTAATCTCCCCGCCGTACCGCACGAGCAGCAGGCGCATGTTGC
GCATTTCCGCCT

consensusID : consensus_3483#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [AAAAGAAAGACTCGTGGGTCCCCGAAAACAAGCACAGCTAAAATACCGATGTGTGCGTGTGTGCCTCCTGGTGACTGTGAGCAAGCCTTAATCATCGTATTATTGCGTAATGTTCCTCCTCCTTAGCGCACCGACACGATGGCGCGTGCGTGGCTGCCTACTGTCGCTTTCCTCGAGGTAATGTTTAGTTTAGTGCTTTCCTTTTATTTCGCGATTTTTTTTTGGAGGCGCTATATAAATGGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGTATACATATATTGCCGCACCCTTAGTGGCAAAATCCAGTACAACCGGCTTCTGCTG]

[+] EMBL AGA281975            [AAAAGAAAGACTCGTGGGTCCCCGAAAACAAGCACAGCTAAAATACCGATGTGTGCGTGTGTGCCTCCTGGTGACTGTGAGCAAGCCTTAATCATCGTATTATTGCGTAATGTTCCTCCTCCTTAGCGCACCGACACGATGGCGCGTGCGTGGCTGCCTACTGTCGCTTTCCTCGAGGTAATGTTTAGTTTAGTGCTTTCCTTTTATTTCGCGATTTTTTTTTGGAGGCGCTATATAAATGGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGTATACATATATTGCCGCACCCTTAGTGGCAAAATCCAGTACAACCGGCTTCTGCTG]




>consensus_3483#1
AAAAGAAAGACTCGTGGGTCCCCGAAAACAAGCACAGCTAAAATACCGATGTGTGCGTGT
GTGCCTCCTGGTGACTGTGAGCAAGCCTTAATCATCGTATTATTGCGTAATGTTCCTCCT
CCTTAGCGCACCGACACGATGGCGCGTGCGTGGCTGCCTACTGTCGCTTTCCTCGAGGTA
ATGTTTAGTTTAGTGCTTTCCTTTTATTTCGCGATTTTTTTTTGGAGGCGCTATATAAAT
GGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGTATACATATA
TTGCCGCACCCTTAGTGGCAAAATCCAGTACAACCGGCTTCTGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3483#0      ACCTCCTCGTATATCTGTTATTTTATGTACATTTCCGAAACGATACGCAAAAAGCATTCA 60
consensus_3483#1      ------------------------------------------------------------
                                                                                  

consensus_3483#0      ATTTGAGATAGGCTTTAAATTCGTGTATATAATAGGTAGTAAGTGTTTGCATTGGCGTTT 120
consensus_3483#1      ------------------------------------------------------------
                                                                                  

consensus_3483#0      CTATTCTTAACTACGGAAATGGGAG-----GAGGGGGTGAAAAAAGAAAGTCTCGTATAT 175
consensus_3483#1      -------AAAAGAAAGACTCGTGGGTCCCCGAAAACAAGCACAGCTAAAATACCG-ATGT 52
                              **  *  **   * * *     **      * * *   *** *  ** ** *

consensus_3483#0      ACGCGAAAACAAGCACAGCTAGAATGCCAACAA-TCTTAATCATCGTATTATTGCGTAAT 234
consensus_3483#1      GTGCGTGTGTGCCTCCTGGT-GACTGTGAGCAAGCCTTAATCATCGTATTATTGCGTAAT 111
                        ***          * * * ** **  * ***  *************************

consensus_3483#0      GTTCCTCCTCCTTAGCGCACCGACACGATGGCGCGTGCGTGGCTGCCTACTGTCGCTTTC 294
consensus_3483#1      GTTCCTCCTCCTTAGCGCACCGACACGATGGCGCGTGCGTGGCTGCCTACTGTCGCTTTC 171
                      ************************************************************

consensus_3483#0      TACGAGGTAATGTTTAGTTTAGTGCTTTCCTTTTTTTTCGCGATTTTTTT--GGAGGCGC 352
consensus_3483#1      CTCGAGGTAATGTTTAGTTTAGTGCTTTCCTTTTATTTCGCGATTTTTTTTTGGAGGCGC 231
                        ******************************** ***************  ********

consensus_3483#0      TATATAAATGGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGT 412
consensus_3483#1      TATATAAATGGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGT 291
                      ************************************************************

consensus_3483#0      ATACATATATTGCCGCACCCTTAGTGGCAAAACCCAGTACAACCGGCTTCTGCTGGTAGT 472
consensus_3483#1      ATACATATATTGCCGCACCCTTAGTGGCAAAATCCAGTACAACCGGCTTCTGCTG----- 346
                      ******************************** **********************     

consensus_3483#0      GAGTTCAGAAGCGGTCATGGGTTTCCAATTGCTCCCGAAGATGCAGGAAAAAAGGGGCTG 532
consensus_3483#1      ------------------------------------------------------------
                                                                                  

consensus_3483#0      ATGAGGAATTAGTAAGAGGGTGTGTGTATCGCTGATTGTCTAATCGCTTAGCTTCACTTT 592
consensus_3483#1      ------------------------------------------------------------
                                                                                  

consensus_3483#0      CTTGGCAGCGCTTGATCCACCCTCGTGATCTTGTGCCTGTGGCTCCGCTTCATTCCCTTC 652
consensus_3483#1      ------------------------------------------------------------
                                                                                  

consensus_3483#0      CAGCGATGATGACGATGATGATGATGATGGCACAACAGTGGAACAGGATGAGTTATTTTT 712
consensus_3483#1      ------------------------------------------------------------
                                                                                  

consensus_3483#0      TGTTTTGGGGTACAGCCGCTTCAGCATGCCGGCCGCCGGGCGAGGTTTCATGCTGCACTG 772
consensus_3483#1      ------------------------------------------------------------
                                                                                  

consensus_3483#0      CTTGATCGTGGCCGCTGCCGCCGCTGCCACCGATTCCGTCCGCTCCGGACCGTCGACCGA 832
consensus_3483#1      ------------------------------------------------------------
                                                                                  

consensus_3483#0      GGGCGCACCGAACCCGAGCTGATTAATGTTGGCCAGCAGTTCCAGGTTCTTCGTTTCGGA 892
consensus_3483#1      ------------------------------------------------------------
                                                                                  

consensus_3483#0      CTCGTCCAGCCGGCGGCGTAGCTCCTTAATCTCCCCGCCGTACCGCACGAGCAGCAGGCG 952
consensus_3483#1      ------------------------------------------------------------
                                                                                  

consensus_3483#0      CATGTTGCGCATTTCCGCCT 972
consensus_3483#1      --------------------