cluster # 3484

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Anopheles gambiae
cluster # 3484 cluster # 3484 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3484#0 length = 956 sequences # 2

consensus_3484#1 length = 519 sequences # 1

consensusID : consensus_3484#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 956
fasta sequence

                              [GAATCCCCCGAGGTTTGGACGTGGTGCGGGACGAATGGTTGCTGCGAGCCGGCACCGAGGGTAGGCTGGAAGCGTTCCTGGCCGGAGGATATGCTCAGCGCAACGGAGCCTGACGCGCATGCGTGCTGGCGCAACAGTACGACCTGGTACGGTGACTCTTACACTGCTGCCCCACCACACCTGACCTCGTTCTGGCTGCCCTGCTGCGCCTGCATGGGAGGCTGACACCTGGCGAGCCTGGGCCTGCCTGACCTGACCTGGTATGGTGGTACTGGGGCGAGCTGGATGCTGCTGGGCTGTGCTGGCACTGCCACCCGCATGCGTTTGTTCCTGCTGGTCTCACCGGACGGCTGTACCTGGTCCTGCGCAAGCGTGGGATGGGCAGGTCGCCGATGTTCCGGGCCCAGCGGGACATGCTGCGCTTCGTGCAGTACGTGGGGCCTGCTGGTTGCGCGACTCCGAGCCGGGGCGCGCGCGTTACGTGTTTGTTGCGCCCGGCGCTACCGCACGGTGCAGGAGATGGAGCGGTGGGCCGACCAGATGGCGCACGGTGAGCCGGCGAGCGGGGATTGACACGACACTGCTGCAGGTCCGCTGGATTGCGCGCTCGATCGAGGCGGGACAGTTGTGCGATGGGGCGGATTTTATCGTTGCTGACTGAAACGGTCACAAAGCATCAGGATAGCACTTAGCATAGACATACATTAGTGTTGGGTTTCCTTGAATCTTTCGTTGAGATTCATTCATATGAAGCTTCATTGATTCAGTGATTCGACTCTCGAATCGGCTCTTCAAAGTTTTATCTCCAAGGATTCATCTCTAAAGATTCATCTCCATGGACTCATTTCCAAAGATTCATTTTTAAAGATTGATCTCCAAGGATTCATCTCTTAAGATTCATCTTCAAGGATTTATTTATAAAAATCGACTTTTCAAAGATTTATCTCCAAGGATAC]

[+] EMBL AL693448             [GAATCCCCCGAGGTTTGGACGTGGTGCGGGACGAATGGTTGCTGCGAGCCGGCACCGAGGGTAGGCTGGAAGCGTTCCTGGCCGGAGGATATGCTCAGCGCAACGGAGCCTGACGCGCATGCGTGCTGGCGCAACAGTACGACCTGGTACGGTGACTCTTACACTGCTGCCCCACCACACCTGACCTCGTTCTGGCTGCCCTGCTGCGCCTGCATGGGAGGCTGACACCTGGCGAGCCTGGGCCTGCCTGACCTGACCTGGTATGGTGGTACTGGGGCGAGCTGGATGCTGCTGGGCTGTGCTGGCACTGCCACCCGCATGCGTTTGTTCCTGCTGGTCTCACCGGACGGCTGTACCTGGTCCTGCGCAAGCGTGGGATGGGCAGGTCGCCGATGTTCCGGGCCCAGCGGGACATGCTGCGCTTCGTGCAGTACGTGGGGCCTGCTGGTTGCGCGACTCCGAGCCGGGGCGCGCGCGTTACGTGTTTGTTGCGCCCGGCGCTACCGCACGGTGCAGGAGATGGAGCGGTGGGCCGACCAGATGGCGCACGGTGAGCCGGCGAGCGGGGATTGACACGACACTGCTGCAGGTCCGCTGGATTGCGCGCTCGATCGAGGCGGGACAGTTGTGCGATGGGGCGGATTTTATCGTTGCTGACTGAAACGG                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AGA281999            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGA TGACACGACACTGCTGCAGGTCCGCTGGATTGCGCGCTCGATAAAGGCGGGACAGTTGTGCGATGGGGCGGATTTTATCGTTGCTGACTGAAACGGTCACAAAGCATCAGGATAGCACTTAGCATAGACATACATTAGTGTTGGGTTTCCTTGAATCTTTCGTTGAGATTCATTCATATGAAGCTTCATTGATTCAGTGATTCGACTCTCGAATCGGCTCTTCAAAGTTTTATCTCCAAGGATTCATCTCTAAAGATTCATCTCCATGGACTCATTTCCAAAGATTCATTTTTAAAGATTGATCTCCAAGGATTCATCTCTTAAGATTCATCTTCAAGGATTTATTTATAAAAATCGACTTTTCAAAGATTTATCTCCAAGGATAC]




>consensus_3484#0
GAATCCCCCGAGGTTTGGACGTGGTGCGGGACGAATGGTTGCTGCGAGCCGGCACCGAGG
GTAGGCTGGAAGCGTTCCTGGCCGGAGGATATGCTCAGCGCAACGGAGCCTGACGCGCAT
GCGTGCTGGCGCAACAGTACGACCTGGTACGGTGACTCTTACACTGCTGCCCCACCACAC
CTGACCTCGTTCTGGCTGCCCTGCTGCGCCTGCATGGGAGGCTGACACCTGGCGAGCCTG
GGCCTGCCTGACCTGACCTGGTATGGTGGTACTGGGGCGAGCTGGATGCTGCTGGGCTGT
GCTGGCACTGCCACCCGCATGCGTTTGTTCCTGCTGGTCTCACCGGACGGCTGTACCTGG
TCCTGCGCAAGCGTGGGATGGGCAGGTCGCCGATGTTCCGGGCCCAGCGGGACATGCTGC
GCTTCGTGCAGTACGTGGGGCCTGCTGGTTGCGCGACTCCGAGCCGGGGCGCGCGCGTTA
CGTGTTTGTTGCGCCCGGCGCTACCGCACGGTGCAGGAGATGGAGCGGTGGGCCGACCAG
ATGGCGCACGGTGAGCCGGCGAGCGGGGATTGACACGACACTGCTGCAGGTCCGCTGGAT
TGCGCGCTCGATCGAGGCGGGACAGTTGTGCGATGGGGCGGATTTTATCGTTGCTGACTG
AAACGGTCACAAAGCATCAGGATAGCACTTAGCATAGACATACATTAGTGTTGGGTTTCC
TTGAATCTTTCGTTGAGATTCATTCATATGAAGCTTCATTGATTCAGTGATTCGACTCTC
GAATCGGCTCTTCAAAGTTTTATCTCCAAGGATTCATCTCTAAAGATTCATCTCCATGGA
CTCATTTCCAAAGATTCATTTTTAAAGATTGATCTCCAAGGATTCATCTCTTAAGATTCA
TCTTCAAGGATTTATTTATAAAAATCGACTTTTCAAAGATTTATCTCCAAGGATAC

consensusID : consensus_3484#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [CCGCCCACGCGTCCGCGCACTCGAGCGGCTCGTGCGGCGGCACGGTGGCCGGGCCGTCGCCAACCCGACCCCGGCCACGTACGCCATCGGGGGCGGGCGCGTCACCTTCAAGGTGCGCAAGTACATGGAGACGGGTCGCTGGGACGTGGTGCGGGACGAATGGTTGCTGCGAGCCGGCACCGAGGGTAGGCTGGAAGCGTTCCGGCCGGAGGATATGCTCAGCGCAACGGAGCCGACGCGCATGCGGCTGGCGCAACAGTACGACCGGTACGGTGACTCTTACACGCGCCCCACCACACCGACCTCGTTCGGCGCCCTGCTGCGCCGCATGGGAGGCGACACCGGCGAGCCGGGCCGCCTGACCGACCGGGAGGTGGTACGGGGCGAGCGGATGCTGCTGGGCGTGCGGCACGCCACCCGCATGCGTTTGTTCCGCGGTCTCACCGGACGGCTGTACCGGTCCGCGCAAGCGTGGGATGGGCAGGTCGCCGAGTTCCGGGGCCCAGCGGGACATGCTGC]

[+] EMBL BM646095             [CCGCCCACGCGTCCGCGCACTCGAGCGGCTCGTGCGGCGGCACGGTGGCCGGGCCGTCGCCAACCCGACCCCGGCCACGTACGCCATCGGGGGCGGGCGCGTCACCTTCAAGGTGCGCAAGTACATGGAGACGGGTCGCTGGGACGTGGTGCGGGACGAATGGTTGCTGCGAGCCGGCACCGAGGGTAGGCTGGAAGCGTTCCGGCCGGAGGATATGCTCAGCGCAACGGAGCCGACGCGCATGCGGCTGGCGCAACAGTACGACCGGTACGGTGACTCTTACACGCGCCCCACCACACCGACCTCGTTCGGCGCCCTGCTGCGCCGCATGGGAGGCGACACCGGCGAGCCGGGCCGCCTGACCGACCGGGAGGTGGTACGGGGCGAGCGGATGCTGCTGGGCGTGCGGCACGCCACCCGCATGCGTTTGTTCCGCGGTCTCACCGGACGGCTGTACCGGTCCGCGCAAGCGTGGGATGGGCAGGTCGCCGAGTTCCGGGGCCCAGCGGGACATGCTGC]




>consensus_3484#1
CCGCCCACGCGTCCGCGCACTCGAGCGGCTCGTGCGGCGGCACGGTGGCCGGGCCGTCGC
CAACCCGACCCCGGCCACGTACGCCATCGGGGGCGGGCGCGTCACCTTCAAGGTGCGCAA
GTACATGGAGACGGGTCGCTGGGACGTGGTGCGGGACGAATGGTTGCTGCGAGCCGGCAC
CGAGGGTAGGCTGGAAGCGTTCCGGCCGGAGGATATGCTCAGCGCAACGGAGCCGACGCG
CATGCGGCTGGCGCAACAGTACGACCGGTACGGTGACTCTTACACGCGCCCCACCACACC
GACCTCGTTCGGCGCCCTGCTGCGCCGCATGGGAGGCGACACCGGCGAGCCGGGCCGCCT
GACCGACCGGGAGGTGGTACGGGGCGAGCGGATGCTGCTGGGCGTGCGGCACGCCACCCG
CATGCGTTTGTTCCGCGGTCTCACCGGACGGCTGTACCGGTCCGCGCAAGCGTGGGATGG
GCAGGTCGCCGAGTTCCGGGGCCCAGCGGGACATGCTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3484#0      ------------------------------------------------------------
consensus_3484#1      CCGCCCACGCGTCCGCGCACTCGAGCGGCTCGTGCGGCGGCACGGTGGCCGGGCCGTCGC 60
                                                                                  

consensus_3484#0      ----------------------------------------------------------GA 2
consensus_3484#1      CAACCCGACCCCGGCCACGTACGCCATCGGGGGCGGGCGCGTCACCTTCAAGGTGCGCAA 120
                                                                                 *

consensus_3484#0      ATCCCCCGAG-------GTTTGGACGTGGTGCGGGACGAATGGTTGCTGCGAGCCGGCAC 55
consensus_3484#1      GTACATGGAGACGGGTCGCTGGGACGTGGTGCGGGACGAATGGTTGCTGCGAGCCGGCAC 180
                       * *   ***       * * ***************************************

consensus_3484#0      CGAGGGTAGGCTGGAAGCGTTCCTGGCCGGAGGATATGCTCAGCGCAACGGAGCCTGACG 115
consensus_3484#1      CGAGGGTAGGCTGGAAGCGTTCC-GGCCGGAGGATATGCTCAGCGCAACGGAGCC-GACG 238
                      *********************** ******************************* ****

consensus_3484#0      CGCATGCGTGCTGGCGCAACAGTACGACCTGGTACGGTGACTCTTACACTGCTGCCCCAC 175
consensus_3484#1      CGCATGCG-GCTGGCGCAACAGTACGACC-GGTACGGTGACTCTTACACG--CGCCCCAC 294
                      ******** ******************** *******************    *******

consensus_3484#0      CACACCTGACCTCGTTCTGGCTGCCCTGCTGCGCCTGCATGGGAGGCTGACACCTGGCGA 235
consensus_3484#1      CACACC-GACCTCGTTCGG--CGCCCTGCTGCGCC-GCATGGGAGGC-GACACC-GGCGA 348
                      ****** ********** *   ************* *********** ****** *****

consensus_3484#0      GCCTGGGCCTGCCTGACCTGACCTGGTATGGTGGTACTGGGGCGAGCTGGATGCTGCTGG 295
consensus_3484#1      GCCGGG--CCGCCTGACC-GACCGGGA--GGTGGTAC-GGGGCGAGC-GGATGCTGCTGG 401
                      *** **  * ******** **** **   ******** ********* ************

consensus_3484#0      GCTGTGCTGGCACTGCCACCCGCATGCGTTTGTTCCTGCTGGTCTCACCGGACGGCTGTA 355
consensus_3484#1      GC-GTGC-GGCAC-GCCACCCGCATGCGTTTGTTCC--GCGGTCTCACCGGACGGCTGTA 456
                      ** **** ***** **********************    ********************

consensus_3484#0      CCTGGTCCTGCGCAAGCGTGGGATGGGCAGGTCGCCGATGTTCCGGGCCCAGCGGGACAT 415
consensus_3484#1      CC-GGTCC-GCGCAAGCGTGGGATGGGCAGGTCGCCGAGTTCCGGGGCCCAGCGGGACAT 514
                      ** ***** *****************************  * * ****************

consensus_3484#0      GCTGCGCTTCGTGCAGTACGTGGGGCCTGCTGGTTGCGCGACTCCGAGCCGGGGCGCGCG 475
consensus_3484#1      GCTGC------------------------------------------------------- 519
                      *****                                                       

consensus_3484#0      CGTTACGTGTTTGTTGCGCCCGGCGCTACCGCACGGTGCAGGAGATGGAGCGGTGGGCCG 535
consensus_3484#1      ------------------------------------------------------------
                                                                                  

consensus_3484#0      ACCAGATGGCGCACGGTGAGCCGGCGAGCGGGGATTGACACGACACTGCTGCAGGTCCGC 595
consensus_3484#1      ------------------------------------------------------------
                                                                                  

consensus_3484#0      TGGATTGCGCGCTCGATCGAGGCGGGACAGTTGTGCGATGGGGCGGATTTTATCGTTGCT 655
consensus_3484#1      ------------------------------------------------------------
                                                                                  

consensus_3484#0      GACTGAAACGGTCACAAAGCATCAGGATAGCACTTAGCATAGACATACATTAGTGTTGGG 715
consensus_3484#1      ------------------------------------------------------------
                                                                                  

consensus_3484#0      TTTCCTTGAATCTTTCGTTGAGATTCATTCATATGAAGCTTCATTGATTCAGTGATTCGA 775
consensus_3484#1      ------------------------------------------------------------
                                                                                  

consensus_3484#0      CTCTCGAATCGGCTCTTCAAAGTTTTATCTCCAAGGATTCATCTCTAAAGATTCATCTCC 835
consensus_3484#1      ------------------------------------------------------------
                                                                                  

consensus_3484#0      ATGGACTCATTTCCAAAGATTCATTTTTAAAGATTGATCTCCAAGGATTCATCTCTTAAG 895
consensus_3484#1      ------------------------------------------------------------
                                                                                  

consensus_3484#0      ATTCATCTTCAAGGATTTATTTATAAAAATCGACTTTTCAAAGATTTATCTCCAAGGATA 955
consensus_3484#1      ------------------------------------------------------------
                                                                                  

consensus_3484#0      C 956
consensus_3484#1      -