These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3487#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence [CCGCGGACGCGTGGGTAAAGATGTTCCGTACTGCGCTAAGCTTGGCCGCCTTCTGGCTGCCATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAAGTAGCAACCAGTCGTGATGCGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAACCGATCAATTACAACCTTTTCCTGGACATTACAAGCTACGATTTCTACTCGTACAACGGAACGGTAGAGATAACATTTCGCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTGATGGGCTGGTGATCGCGACCGAAAGCATTAAGGTGACCGGGCCGGACGGTACCGATGTACCAGTTGCAAATGTAATATACATGGAGGAGTTTGAGCAAATATATTTTGGCTTCAGAGATCGGCTGCAGACGGGGGAGCAGTACAAGATTGCGATAAGCTTCCTGAATAATATTGGCACTGAACTGAAAGGATTGTACAGAAGTAGCTACAAGGCTGGGAACACAACAAGATATCTTGCTACAACCCATTTCGAGTCCACTTATGCTAGGAGCGTATTTCCATGCTACGATGAACCATCGTACAAGGCCACGTTCAACGTAAAGATCCGTCATCGCTCCGAGTACAGTGCCCTGTCTAATATGCCAGCAATAAATAGCGTAACGGTAGGAGACTATACCGGAAACAACGTTCGACACTACACCTCTAATG] [+] EMBL BM615627 [CCGCGGACGCGTGGGTAAAGATGTTCCGTACTGCGCTAAGCTTGGCCGCCTTCTGGCTGCCATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAAGTAGCAACCAGTCGTGATGCGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAACCGATCAATTACAACCTTTTCCTGGACATTACAAGCTACGATTTCTACTCGTACAACGGAACGGTAGAGATAACATTTCGCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTGATGGGCTGGTGATCGCGACCGAAAGCATTAAGGTGACCGGGCCGGACGGTACCGATGTACCAGTTGCAAATGTAATATACATGGAGGAGTTTGAGCAAATATATTTTGGCTTCAGAGATCGGCTGCAGACGGGGGAGCAGTACAAGATTGCGATAAGCTTCCTGAATAATATTGGCACTGAACTGAAAGGATTGTACAGAAGTAGCTACAAGGCTGGGAACACAACAAGATATCTTGCTACAACCCATTTCGAGTCCACTTATGCTAGGAGCGTATTTCCATGCTACGATGAACCATCGTACAAGGCCACGTTCAACGTAAAGATCCGTCATCGCTCCGAGTACAGTGCCCTGTCTAATATGCCAGCAATAAATAGCGTAACGGTAGGAGACTATACCGGAAACAACGTTCGACACTACACCTCTAATG] consensusID : consensus_3487#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 674 fasta sequence [CCGGTGACGCAGTCCCCAATTAGGTACAGTCCCATAAAGATGTTCCGTACTGCGCTAAGCTTGGCCGCCTTCTGGCTGCCATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAAGTAGCAACCAGTCGTGATGCGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAACCGATCAATTACAACCTTTTCCTGGACATTACAAGCTACGATTTCTACTCGTACAACGGAACGGTAGAGATAACATTTCGCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTGATGGGCTGGTGATCGCGACCGAAAGCATTAAGGTGACCGGGCCGGACGGTACCGATGTACCAGTTGCAAATGTAATATACATGGAGGAGTTTGAGCAAATATATTTTGGCTTCAGAGATCGGCTGCAGACGGGGGAGCAGTACAAGATTGCGATAAGCTTCCTGAATAATATTGGCACTGAACTGAAAGGATTGTACAGAAGTAGCTACAAGGCTGGGAACACAACAAGATATCTTGCTACAACCCATTTCGAGTCCACTTATGCTAGGAGCGTATTTCCATGCTACGATGAACCATCGTACAAGGCCACGTTCAACGTAAAGATCCGTCATCGCTCCGAGTACAGTGCCCTGTCTAATATGCCAGCAATAAATAG] [+] EMBL BM646552 [CCGGTGACGCAGTCCCCAATTAGGTACAGTCCCATAAAGATGTTCCGTACTGCGCTAAGCTTGGCCGCCTTCTGGCTGCCATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAAGTAGCAACCAGTCGTGATGCGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAACCGATCAATTACAACCTTTTCCTGGACATTACAAGCTACGATTTCTACTCGTACAACGGAACGGTAGAGATAACATTTCGCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTGATGGGCTGGTGATCGCGACCGAAAGCATTAAGGTGACCGGGCCGGACGGTACCGATGTACCAGTTGCAAATGTAATATACATGGAGGAGTTTGAGCAAATATATTTTGGCTTCAGAGATCGGCTGCAGACGGGGGAGCAGTACAAGATTGCGATAAGCTTCCTGAATAATATTGGCACTGAACTGAAAGGATTGTACAGAAGTAGCTACAAGGCTGGGAACACAACAAGATATCTTGCTACAACCCATTTCGAGTCCACTTATGCTAGGAGCGTATTTCCATGCTACGATGAACCATCGTACAAGGCCACGTTCAACGTAAAGATCCGTCATCGCTCCGAGTACAGTGCCCTGTCTAATATGCCAGCAATAAATAG] [+] EMBL CNS08TR4 [ GGTACAGTCCCATAAAGATGTTCCGTACTGCGCTAAGCTTGGCCGCCTTCTGGCTGCCATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAAGTAGCAACCAGTCGTGATGCGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAACCGATCAATTACAACCTTTTCCTGGACATTACAAACTACGATTTCTACTCGTACAACGGAACGGTAGAGATAACATTTCGCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTCATcccctc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3487#0 -------------------CCGCGGACGCGTGGGTAAAGATGTTCCGTACTGCGCTAAGC 41 consensus_3487#1 CCGGTGACGCAGTCCCCAATTAGGTACAGTCCCATAAAGATGTTCCGTACTGCGCTAAGC 60 * ** ************************** consensus_3487#0 TTGGCCGCCTTCTGGCTGCCATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAA 101 consensus_3487#1 TTGGCCGCCTTCTGGCTGCCATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAA 120 ************************************************************ consensus_3487#0 GTAGCAACCAGTCGTGATGCGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAA 161 consensus_3487#1 GTAGCAACCAGTCGTGATGCGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAA 180 ************************************************************ consensus_3487#0 CCGATCAATTACAACCTTTTCCTGGACATTACAAGCTACGATTTCTACTCGTACAACGGA 221 consensus_3487#1 CCGATCAATTACAACCTTTTCCTGGACATTACAAGCTACGATTTCTACTCGTACAACGGA 240 ************************************************************ consensus_3487#0 ACGGTAGAGATAACATTTCGCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTGAT 281 consensus_3487#1 ACGGTAGAGATAACATTTCGCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTGAT 300 ************************************************************ consensus_3487#0 GGGCTGGTGATCGCGACCGAAAGCATTAAGGTGACCGGGCCGGACGGTACCGATGTACCA 341 consensus_3487#1 GGGCTGGTGATCGCGACCGAAAGCATTAAGGTGACCGGGCCGGACGGTACCGATGTACCA 360 ************************************************************ consensus_3487#0 GTTGCAAATGTAATATACATGGAGGAGTTTGAGCAAATATATTTTGGCTTCAGAGATCGG 401 consensus_3487#1 GTTGCAAATGTAATATACATGGAGGAGTTTGAGCAAATATATTTTGGCTTCAGAGATCGG 420 ************************************************************ consensus_3487#0 CTGCAGACGGGGGAGCAGTACAAGATTGCGATAAGCTTCCTGAATAATATTGGCACTGAA 461 consensus_3487#1 CTGCAGACGGGGGAGCAGTACAAGATTGCGATAAGCTTCCTGAATAATATTGGCACTGAA 480 ************************************************************ consensus_3487#0 CTGAAAGGATTGTACAGAAGTAGCTACAAGGCTGGGAACACAACAAGATATCTTGCTACA 521 consensus_3487#1 CTGAAAGGATTGTACAGAAGTAGCTACAAGGCTGGGAACACAACAAGATATCTTGCTACA 540 ************************************************************ consensus_3487#0 ACCCATTTCGAGTCCACTTATGCTAGGAGCGTATTTCCATGCTACGATGAACCATCGTAC 581 consensus_3487#1 ACCCATTTCGAGTCCACTTATGCTAGGAGCGTATTTCCATGCTACGATGAACCATCGTAC 600 ************************************************************ consensus_3487#0 AAGGCCACGTTCAACGTAAAGATCCGTCATCGCTCCGAGTACAGTGCCCTGTCTAATATG 641 consensus_3487#1 AAGGCCACGTTCAACGTAAAGATCCGTCATCGCTCCGAGTACAGTGCCCTGTCTAATATG 660 ************************************************************ consensus_3487#0 CCAGCAATAAATAGCGTAACGGTAGGAGACTATACCGGAAACAACGTTCGACACTACACC 701 consensus_3487#1 CCAGCAATAAATAG---------------------------------------------- 674 ************** consensus_3487#0 TCTAATG 708 consensus_3487#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||