These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [GAGGCAAGATTCGGCACGATGGAGAGAACTGTGCCAGTGTAACGATGGTTACAGTAACCTTATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGATGCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGACTCATGTGAACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATTCCATCTGTAGAATTAGCCCTTCACTCAACTGAGTACATTCTTTGGTTGGCTATTGCTGGTACGCTTGGCGGACTTACGGTACTGTTTGGTATTGTGTACTTCAGGTACTTCAGACCATCTGGTAGCTTTAAGACTACAGGAGTAAGAATGAGTGAGATTAAATCCATTGACTGAACGAGTTTAAACGAGTGATTTGTTATTTGTTGATTTGTTCTTATATCGATTTGCATAGCTTTTTTTTAGATTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACCAAATCAAAGCCCTTGAAAATTTGCTGCCGAGTAAGTTTGGTTTCGAACACAAAGCAATTCCTAACGNCCGCATTAATTTCGCGTCGAGACAGCCAGTAGCAACAGGCAGCAAAAAAGTCAATTGAATAAACGTTATTACCAACNTGCCACGATTTTTTACTTTGTTCCAGCACCAAACAACATTTTGCCCTTAANC] [+] EMBL BX467932 [GAGGCAAGATTCGGCACGATGGAGAGAACTGTGCCAGTGTAACGATGGTTACAGTAACCTTATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGATGCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGACTCATGTGAACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATTCCATCTGTAGAATTAGCCCTTCACTCAACTGAGTACATTCTTTGGTTGGCTATTGCTGGTACGCTTGGCGGACTTACGGTACTGTTTGGTATTGTGTACTTCAGGTACTTCAGACCATCTGGTAGCTTTAAGACTACAGGAGTAAGAATGAGTGAGATTAAATCCATTGACTGAACGAGTTTAAACGAGTGATTTGTTATTTGTTGATTTGTTCTTATATCGATTTGCATAGCTTTTTTTTAGATTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACCAAATCAAAGCCCTTGAAAATTTGCTGCCGAGTAAGTTTGGTTTCGAACACAAAGCAATTCCTAACGNCCGCATTAATTTCGCGTCGAGACAGCCAGTAGCAACAGGCAGCAAAAAAGTCAATTGAATAAACGTTATTACCAACNTGCCACGATTTTTTACTTTGTTCCAGCACCAAACAACATTTTGCCCTTAANC] consensusID : consensus_3503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [TGTCTGGAGGGATTCAATGCTGTATACAATCAGGAAGAGCTCTCGCAATGTATCCCAATCTGTGAGCAAGACTGTGAGAATGGCACCTGTGCAGCTCCCAACCAGTGCTCGTGTTATGAAGGATATACAGCGGGATATAATGAAAGCTGCACTTCCATTTGCGAGAGAGACTGTGAAGCGCACAGTGGTTTTTGTGAAGAGAACCTGTGCCAGTGTAACGATGGTTACAGTAACCTTATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGATGCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGATTCATGTGAACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATT] [+] EMBL BX617511 [TGTCTGGAGGGATTCAATGCTGTATACAATCAGGAAGAGCTCTCGCAATGTATCCCAATCTGTGAGCAAGACTGTGAGAATGGCACCTGTGCAGCTCCCAACCAGTGCTCGTGTTATGAAGGATATACAGCGGGATATAATGAAAGCTGCACTTCCATTTGCGAGAGAGACTGTGAAGCGCACAGTGGTTTTTGTGAAGAGAACCTGTGCCAGTGTAACGATGGTTACAGTAACCTTATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGATGCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGATTCATGTGAACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATT] consensusID : consensus_3503#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [AAGACTACAGGAGTAAGAATGAGTGAGATTAAATCCATTGACTGAACGAGTTTAAACGAGTGATTTTTTTTTTTTTTTTTGTTCTTATATCGATTTGCATTGGTTTGTGCAATGAACAGAATCTTTGTGTAAATTGACGCATTTGAAATTATCTTTTCATATGGTAAGCTTTTTTAGATTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACTAAATCAAAGCCGTTGAAAACTTGCTGCCGAGTAGTTCGTTTCGATCACAAAGCAATTCTAACGCCGCATAATTTCGCGTCGAGACAGCAGTAGCAACAGCAGCAAAAAGTCAATGAATAAACGTTATTTACGACCTGCCACGATATATGACTTTGGTACCAGCACCAGACCACCGAGTTTTGCCCTACGAGCACCGGCGAGACGAATGTTATGCCGCGACACCATGAGTTATACGATAACG] [+] EMBL AGA282461 [AAGACTACAGGAGTAAGAATGAGTGAGATTAAATCCATTGACTGAACGAGTTTAAACGAGTGATTTTTTTTTTTTTTTTTGTTCTTATATCGATTTGCATTGGTTTGTGCAATGAACAGAATCTTTGTGTAAATTGACGCATTTGAAATTATCTTTTCATATGGTAAGCTTTTTTAGATTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACTAAATCAAAGCCGTTGAAAACTTGCTGCCGAGTAGTTCGTTTCGATCACAAAGCAATTCTAACGCCGCATAATTTCGCGTCGAGACAGCAGTAGCAACAGCAGCAAAAAGTCAATGAATAAACGTTATTTACGACCTGCCACGATATATGACTTTGGTACCAGCACCAGACCACCGAGTTTTGCCCTACGAGCACCGGCGAGACGAATGTTATGCCGCGACACCATGAGTTATACGATAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3503#0 GAGGCAAGATTCGGCACGATGGAGAGAACTGTGCCAGTGTAACGATGGTTACAGTAACCT 60 consensus_3503#2 ------------------------------------------------------------ consensus_3503#1 ------------------------------------------------------------ consensus_3503#0 TATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGAT 120 consensus_3503#2 ------------------------------------------------------------ consensus_3503#1 ------------------------------------------------------------ consensus_3503#0 GCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGACTCATGTGA 180 consensus_3503#2 ------------------------------------------------------------ consensus_3503#1 ------------------------------------------------------------ consensus_3503#0 ACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATG 240 consensus_3503#2 ------------------------------------------------------------ consensus_3503#1 ------------------------------------------------------------ consensus_3503#0 CTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATTCCATCTGT 300 consensus_3503#2 ------------------------------------------------------------ consensus_3503#1 ------------------------------------------------------------ consensus_3503#0 AGAATTAGCCCTTCACTCAACTGAGTACATTCTTTGGTTGGCTATTGCTGGTACGCTTGG 360 consensus_3503#2 -------------------------------------------------AAGACTACAGG 11 consensus_3503#1 --------------------------------------------------TGTCTGGAGG 10 * ** consensus_3503#0 CGG--ACTTACGGTACTGTTTGGTATTGTGTACTTCAGGTACTTCAGACCATCTGGTAGC 418 consensus_3503#2 AGT--AAGAATGAGTGAGATTAAATCCATTGACTGAACG-AGTTTAAACGAGTGATTTTT 68 consensus_3503#1 GATTCAATGCTGTATACAATCAGGAAGAGCTCTCGCAATGTATCCCAATCTGTGAGCAAG 70 * * * * * * consensus_3503#0 TTTAAGACTACAGGAGTAAGAATGAGTGAGATTAAA-TCCATTGACTGAACGAGTTTAAA 477 consensus_3503#2 TTTTTTTTTTTTGTTCTTATATCGATTTGCATTGG--TTTGTGCAATGAAC-AGAATCTT 125 consensus_3503#1 ACTGTGAGAATGGCACCTGTGCAGCTCCCAACCAGTGCTCGTGTTATGAAGGATATACAG 130 * * * * * **** * consensus_3503#0 CGAGTGATTTGTTATTTGTTGATTTGTTCTTAT-ATCGATTTGCATAGCTTTTTTTTAGA 536 consensus_3503#2 TGTGTAAATTGACGCATTTGAAATTATCTTTTC-ATA----TGGTAAGCTTTTTT--AGA 178 consensus_3503#1 CGGG-ATATAATGAAAGCTGCACTTCCATTTGCGAGAGAGACTGTGAAGCGCACAGTGGT 189 * * * * * ** ** * * * consensus_3503#0 TTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACCA-AATCAAAGCCCTTGAAA 595 consensus_3503#2 TTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACTA-AATCAAAGCCGTTGAAA 237 consensus_3503#1 TTTTGTGAAGAGAACCTGTGCCAGTGTA-ACGATGGTTACAGTAACCTTATCAATAGATA 248 ***** * * * * * **** *** ** ** * * * * ** * consensus_3503#0 -ATTTGCT-GCCGAGTAAGTTTGGTTTCGAACACAAAGCAATTCCTAACGNCCGCATTAA 653 consensus_3503#2 -ACTTGCT-GCCGAGTAG--TTCGTTTCGATCACAAAGCAATTC-TAACGCC-GCAT-AA 290 consensus_3503#1 CACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGG-AGTGTTTGATGCCGGGCGAGT 307 * ** * ** * * * * *** * * * * * * * * consensus_3503#0 TTTCGCGTCGAGACAGCCAGTAGCAACAGGCAGCAAAAAAGTCAATTGAATAAACGTTAT 713 consensus_3503#2 TTTCGCGTCGAGACAGC-AGTAGCAACAG-CAGCAAAAA-GTCAAT-GAATAAACGTTAT 346 consensus_3503#1 GCTCTTGTTTCGACGGC---TACGAGATG--AGCAACGACACCGAT-TCATGTGAACCAC 361 ** ** *** ** ** * * ***** * * ** ** * consensus_3503#0 TACCAACNTGCCACGATTTTTTACTTTGTT-CCAGCACCAAACAAC---ATTT-TGCCCT 768 consensus_3503#2 TTACGACCTGCCACGATATATGACTTTGGTACCAGCACCAGACCACCGAGTTT-TGCCCT 405 consensus_3503#1 T---GTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCT 418 * ** * * * * * ** * * * ** consensus_3503#0 -TAANC------------------------------------------------- 773 consensus_3503#2 ACGAGCACCGGCGAGACGAATGTTATGCCGCGACACCATGAGTTATACGATAACG 460 consensus_3503#1 ACGGAGAC-GCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATT---- 468 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||