cluster # 3503

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Anopheles gambiae
cluster # 3503 cluster # 3503 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3503#0 length = 773 sequences # 1

consensus_3503#1 length = 468 sequences # 1
consensus_3503#2 length = 460 sequences # 1

consensusID : consensus_3503#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 773
fasta sequence

                              [GAGGCAAGATTCGGCACGATGGAGAGAACTGTGCCAGTGTAACGATGGTTACAGTAACCTTATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGATGCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGACTCATGTGAACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATTCCATCTGTAGAATTAGCCCTTCACTCAACTGAGTACATTCTTTGGTTGGCTATTGCTGGTACGCTTGGCGGACTTACGGTACTGTTTGGTATTGTGTACTTCAGGTACTTCAGACCATCTGGTAGCTTTAAGACTACAGGAGTAAGAATGAGTGAGATTAAATCCATTGACTGAACGAGTTTAAACGAGTGATTTGTTATTTGTTGATTTGTTCTTATATCGATTTGCATAGCTTTTTTTTAGATTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACCAAATCAAAGCCCTTGAAAATTTGCTGCCGAGTAAGTTTGGTTTCGAACACAAAGCAATTCCTAACGNCCGCATTAATTTCGCGTCGAGACAGCCAGTAGCAACAGGCAGCAAAAAAGTCAATTGAATAAACGTTATTACCAACNTGCCACGATTTTTTACTTTGTTCCAGCACCAAACAACATTTTGCCCTTAANC]

[+] EMBL BX467932             [GAGGCAAGATTCGGCACGATGGAGAGAACTGTGCCAGTGTAACGATGGTTACAGTAACCTTATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGATGCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGACTCATGTGAACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATTCCATCTGTAGAATTAGCCCTTCACTCAACTGAGTACATTCTTTGGTTGGCTATTGCTGGTACGCTTGGCGGACTTACGGTACTGTTTGGTATTGTGTACTTCAGGTACTTCAGACCATCTGGTAGCTTTAAGACTACAGGAGTAAGAATGAGTGAGATTAAATCCATTGACTGAACGAGTTTAAACGAGTGATTTGTTATTTGTTGATTTGTTCTTATATCGATTTGCATAGCTTTTTTTTAGATTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACCAAATCAAAGCCCTTGAAAATTTGCTGCCGAGTAAGTTTGGTTTCGAACACAAAGCAATTCCTAACGNCCGCATTAATTTCGCGTCGAGACAGCCAGTAGCAACAGGCAGCAAAAAAGTCAATTGAATAAACGTTATTACCAACNTGCCACGATTTTTTACTTTGTTCCAGCACCAAACAACATTTTGCCCTTAANC]




>consensus_3503#0
GAGGCAAGATTCGGCACGATGGAGAGAACTGTGCCAGTGTAACGATGGTTACAGTAACCT
TATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGAT
GCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGACTCATGTGA
ACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATG
CTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATTCCATCTGT
AGAATTAGCCCTTCACTCAACTGAGTACATTCTTTGGTTGGCTATTGCTGGTACGCTTGG
CGGACTTACGGTACTGTTTGGTATTGTGTACTTCAGGTACTTCAGACCATCTGGTAGCTT
TAAGACTACAGGAGTAAGAATGAGTGAGATTAAATCCATTGACTGAACGAGTTTAAACGA
GTGATTTGTTATTTGTTGATTTGTTCTTATATCGATTTGCATAGCTTTTTTTTAGATTTT
GAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACCAAATCAAAGCCCTTGAAAATTTG
CTGCCGAGTAAGTTTGGTTTCGAACACAAAGCAATTCCTAACGNCCGCATTAATTTCGCG
TCGAGACAGCCAGTAGCAACAGGCAGCAAAAAAGTCAATTGAATAAACGTTATTACCAAC
NTGCCACGATTTTTTACTTTGTTCCAGCACCAAACAACATTTTGCCCTTAANC

consensusID : consensus_3503#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [TGTCTGGAGGGATTCAATGCTGTATACAATCAGGAAGAGCTCTCGCAATGTATCCCAATCTGTGAGCAAGACTGTGAGAATGGCACCTGTGCAGCTCCCAACCAGTGCTCGTGTTATGAAGGATATACAGCGGGATATAATGAAAGCTGCACTTCCATTTGCGAGAGAGACTGTGAAGCGCACAGTGGTTTTTGTGAAGAGAACCTGTGCCAGTGTAACGATGGTTACAGTAACCTTATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGATGCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGATTCATGTGAACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATT]

[+] EMBL BX617511             [TGTCTGGAGGGATTCAATGCTGTATACAATCAGGAAGAGCTCTCGCAATGTATCCCAATCTGTGAGCAAGACTGTGAGAATGGCACCTGTGCAGCTCCCAACCAGTGCTCGTGTTATGAAGGATATACAGCGGGATATAATGAAAGCTGCACTTCCATTTGCGAGAGAGACTGTGAAGCGCACAGTGGTTTTTGTGAAGAGAACCTGTGCCAGTGTAACGATGGTTACAGTAACCTTATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGATGCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGATTCATGTGAACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATT]




>consensus_3503#1
TGTCTGGAGGGATTCAATGCTGTATACAATCAGGAAGAGCTCTCGCAATGTATCCCAATC
TGTGAGCAAGACTGTGAGAATGGCACCTGTGCAGCTCCCAACCAGTGCTCGTGTTATGAA
GGATATACAGCGGGATATAATGAAAGCTGCACTTCCATTTGCGAGAGAGACTGTGAAGCG
CACAGTGGTTTTTGTGAAGAGAACCTGTGCCAGTGTAACGATGGTTACAGTAACCTTATC
AATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGATGCCG
GGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGATTCATGTGAACCA
CTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCTAC
GGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATT

consensusID : consensus_3503#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence

                              [AAGACTACAGGAGTAAGAATGAGTGAGATTAAATCCATTGACTGAACGAGTTTAAACGAGTGATTTTTTTTTTTTTTTTTGTTCTTATATCGATTTGCATTGGTTTGTGCAATGAACAGAATCTTTGTGTAAATTGACGCATTTGAAATTATCTTTTCATATGGTAAGCTTTTTTAGATTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACTAAATCAAAGCCGTTGAAAACTTGCTGCCGAGTAGTTCGTTTCGATCACAAAGCAATTCTAACGCCGCATAATTTCGCGTCGAGACAGCAGTAGCAACAGCAGCAAAAAGTCAATGAATAAACGTTATTTACGACCTGCCACGATATATGACTTTGGTACCAGCACCAGACCACCGAGTTTTGCCCTACGAGCACCGGCGAGACGAATGTTATGCCGCGACACCATGAGTTATACGATAACG]

[+] EMBL AGA282461            [AAGACTACAGGAGTAAGAATGAGTGAGATTAAATCCATTGACTGAACGAGTTTAAACGAGTGATTTTTTTTTTTTTTTTTGTTCTTATATCGATTTGCATTGGTTTGTGCAATGAACAGAATCTTTGTGTAAATTGACGCATTTGAAATTATCTTTTCATATGGTAAGCTTTTTTAGATTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACTAAATCAAAGCCGTTGAAAACTTGCTGCCGAGTAGTTCGTTTCGATCACAAAGCAATTCTAACGCCGCATAATTTCGCGTCGAGACAGCAGTAGCAACAGCAGCAAAAAGTCAATGAATAAACGTTATTTACGACCTGCCACGATATATGACTTTGGTACCAGCACCAGACCACCGAGTTTTGCCCTACGAGCACCGGCGAGACGAATGTTATGCCGCGACACCATGAGTTATACGATAACG]




>consensus_3503#2
AAGACTACAGGAGTAAGAATGAGTGAGATTAAATCCATTGACTGAACGAGTTTAAACGAG
TGATTTTTTTTTTTTTTTTTGTTCTTATATCGATTTGCATTGGTTTGTGCAATGAACAGA
ATCTTTGTGTAAATTGACGCATTTGAAATTATCTTTTCATATGGTAAGCTTTTTTAGATT
TTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACTAAATCAAAGCCGTTGAAAACT
TGCTGCCGAGTAGTTCGTTTCGATCACAAAGCAATTCTAACGCCGCATAATTTCGCGTCG
AGACAGCAGTAGCAACAGCAGCAAAAAGTCAATGAATAAACGTTATTTACGACCTGCCAC
GATATATGACTTTGGTACCAGCACCAGACCACCGAGTTTTGCCCTACGAGCACCGGCGAG
ACGAATGTTATGCCGCGACACCATGAGTTATACGATAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3503#0      GAGGCAAGATTCGGCACGATGGAGAGAACTGTGCCAGTGTAACGATGGTTACAGTAACCT 60
consensus_3503#2      ------------------------------------------------------------
consensus_3503#1      ------------------------------------------------------------
                                                                                  

consensus_3503#0      TATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGAT 120
consensus_3503#2      ------------------------------------------------------------
consensus_3503#1      ------------------------------------------------------------
                                                                                  

consensus_3503#0      GCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGACTCATGTGA 180
consensus_3503#2      ------------------------------------------------------------
consensus_3503#1      ------------------------------------------------------------
                                                                                  

consensus_3503#0      ACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATG 240
consensus_3503#2      ------------------------------------------------------------
consensus_3503#1      ------------------------------------------------------------
                                                                                  

consensus_3503#0      CTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATTCCATCTGT 300
consensus_3503#2      ------------------------------------------------------------
consensus_3503#1      ------------------------------------------------------------
                                                                                  

consensus_3503#0      AGAATTAGCCCTTCACTCAACTGAGTACATTCTTTGGTTGGCTATTGCTGGTACGCTTGG 360
consensus_3503#2      -------------------------------------------------AAGACTACAGG 11
consensus_3503#1      --------------------------------------------------TGTCTGGAGG 10
                                                                           *    **

consensus_3503#0      CGG--ACTTACGGTACTGTTTGGTATTGTGTACTTCAGGTACTTCAGACCATCTGGTAGC 418
consensus_3503#2      AGT--AAGAATGAGTGAGATTAAATCCATTGACTGAACG-AGTTTAAACGAGTGATTTTT 68
consensus_3503#1      GATTCAATGCTGTATACAATCAGGAAGAGCTCTCGCAATGTATCCCAATCTGTGAGCAAG 70
                           *     *       *                *     *    *            

consensus_3503#0      TTTAAGACTACAGGAGTAAGAATGAGTGAGATTAAA-TCCATTGACTGAACGAGTTTAAA 477
consensus_3503#2      TTTTTTTTTTTTGTTCTTATATCGATTTGCATTGG--TTTGTGCAATGAAC-AGAATCTT 125
consensus_3503#1      ACTGTGAGAATGGCACCTGTGCAGCTCCCAACCAGTGCTCGTGTTATGAAGGATATACAG 130
                        *         *          *      *          *    ****  *       

consensus_3503#0      CGAGTGATTTGTTATTTGTTGATTTGTTCTTAT-ATCGATTTGCATAGCTTTTTTTTAGA 536
consensus_3503#2      TGTGTAAATTGACGCATTTGAAATTATCTTTTC-ATA----TGGTAAGCTTTTTT--AGA 178
consensus_3503#1      CGGG-ATATAATGAAAGCTGCACTTCCATTTGCGAGAGAGACTGTGAAGCGCACAGTGGT 189
                       * *    *         *  * **    **   *           *           * 

consensus_3503#0      TTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACCA-AATCAAAGCCCTTGAAA 595
consensus_3503#2      TTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACTA-AATCAAAGCCGTTGAAA 237
consensus_3503#1      TTTTGTGAAGAGAACCTGTGCCAGTGTA-ACGATGGTTACAGTAACCTTATCAATAGATA 248
                      *****  * *    *  *   *  **** ***      **   ** *  * *  * ** *

consensus_3503#0      -ATTTGCT-GCCGAGTAAGTTTGGTTTCGAACACAAAGCAATTCCTAACGNCCGCATTAA 653
consensus_3503#2      -ACTTGCT-GCCGAGTAG--TTCGTTTCGATCACAAAGCAATTC-TAACGCC-GCAT-AA 290
consensus_3503#1      CACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGG-AGTGTTTGATGCCGGGCGAGT 307
                       *  ** *  **           * * * * ***   * * *   * * * * *      

consensus_3503#0      TTTCGCGTCGAGACAGCCAGTAGCAACAGGCAGCAAAAAAGTCAATTGAATAAACGTTAT 713
consensus_3503#2      TTTCGCGTCGAGACAGC-AGTAGCAACAG-CAGCAAAAA-GTCAAT-GAATAAACGTTAT 346
consensus_3503#1      GCTCTTGTTTCGACGGC---TACGAGATG--AGCAACGACACCGAT-TCATGTGAACCAC 361
                        **  **   *** **   **  *   *  *****  *   * **   **       * 

consensus_3503#0      TACCAACNTGCCACGATTTTTTACTTTGTT-CCAGCACCAAACAAC---ATTT-TGCCCT 768
consensus_3503#2      TTACGACCTGCCACGATATATGACTTTGGTACCAGCACCAGACCACCGAGTTT-TGCCCT 405
consensus_3503#1      T---GTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCT 418
                      *        ** *   *     *      * *   **     *       * *     **

consensus_3503#0      -TAANC------------------------------------------------- 773
consensus_3503#2      ACGAGCACCGGCGAGACGAATGTTATGCCGCGACACCATGAGTTATACGATAACG 460
consensus_3503#1      ACGGAGAC-GCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATT---- 468